CSPI06G26340 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G26340
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 23281559 .. 23281867 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTTGGAATGGGGATTGGTGGTAGCCTTCAAATTGTTCCAATGGATCTATCGGACAATACGCTTTGTGATTTACTGGTTCAGCATGTGATGAAGCACTGTCAGACTGTACTTCAAATTGACGCCACCTATGAAGGTTTTATAGATGGTTCGATTGAGATTGGGATGAATGGCAAAACATATTCCTTTAAGTTGAAGTTGAAGATCAAGGTTGGTGATGCTTATGTTATTAAGCCCGTTCTGGTTAAAATCTTTTTTCCATTCATTGGCCTTCCAAGCATTGTGTCTTTCGAGTATCTTGAATGA

mRNA sequence

ATGTCTGTTGGAATGGGGATTGGTGGTAGCCTTCAAATTGTTCCAATGGATCTATCGGACAATACGCTTTGTGATTTACTGGTTCAGCATGTGATGAAGCACTGTCAGACTGTACTTCAAATTGACGCCACCTATGAAGGTTTTATAGATGGTTCGATTGAGATTGGGATGAATGGCAAAACATATTCCTTTAAGTTGAAGTTGAAGATCAAGGTTGGTGATGCTTATGTTATTAAGCCCGTTCTGGTTAAAATCTTTTTTCCATTCATTGGCCTTCCAAGCATTGTGTCTTTCGAGTATCTTGAATGA

Coding sequence (CDS)

ATGTCTGTTGGAATGGGGATTGGTGGTAGCCTTCAAATTGTTCCAATGGATCTATCGGACAATACGCTTTGTGATTTACTGGTTCAGCATGTGATGAAGCACTGTCAGACTGTACTTCAAATTGACGCCACCTATGAAGGTTTTATAGATGGTTCGATTGAGATTGGGATGAATGGCAAAACATATTCCTTTAAGTTGAAGTTGAAGATCAAGGTTGGTGATGCTTATGTTATTAAGCCCGTTCTGGTTAAAATCTTTTTTCCATTCATTGGCCTTCCAAGCATTGTGTCTTTCGAGTATCTTGAATGA

Homology

[Close]

BLAST of CSPI06G26340 vs. TrEMBL
Match: A0A0A0KFL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483250 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.7e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60
           MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK
Sbjct: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60

Query: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 103
           TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE
Sbjct: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

[Close]

BLAST of CSPI06G26340 vs. TrEMBL
Match: A0A0A0KKQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483230 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.1e-42
Identity = 82/102 (80.39%), Postives = 97/102 (95.10%), Query Frame = 1


Query: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60
           M++G+GIGG LQIVP+DLSDNTLCDLLVQHV+KHCQ+VLQIDAT+EGFIDGSIEIG+NGK
Sbjct: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60

Query: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 103
           TY  KLKLK+++GDAYV+K VLVK+FFPF+G PS+VSFEYLE
Sbjct: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLE 102

[Close]

BLAST of CSPI06G26340 vs. TrEMBL
Match: A0A0A0KFK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483240 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.0e-41
Identity = 79/102 (77.45%), Postives = 95/102 (93.14%), Query Frame = 1


Query: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60
           M++G+GI G LQIVP+DLSDNTLCDLLVQHVMKHCQ+VLQIDAT+EG IDG IEIG+NGK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 103
           TY+ KLK+K+++GDAYV+K VLVK+FFPF+G PS+VSFEYLE
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLE 102

[Close]

BLAST of CSPI06G26340 vs. TrEMBL
Match: A0A0A0KIX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483235 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-17
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1


Query: 10  SLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKLKLK 69
           S QI+P+D SD +L +  V  V+ HCQ++ QID  +EG + G  E+G NGKTY+ +LKLK
Sbjct: 8   SKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLK 67

Query: 70  IKVGDAYVIKPVLVKIFFPFIGLPSIVSFE 100
            KVGD YV+K  ++K F P  G PS++SFE
Sbjct: 68  DKVGDRYVLKIGVIKFFCPLFGPPSLLSFE 97

[Close]

BLAST of CSPI06G26340 vs. NCBI nr
Match: gi|700193139|gb|KGN48343.1| (hypothetical protein Csa_6G483250 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 3.9e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60
           MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK
Sbjct: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60

Query: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 103
           TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE
Sbjct: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

[Close]

BLAST of CSPI06G26340 vs. NCBI nr
Match: gi|700193132|gb|KGN48336.1| (hypothetical protein Csa_6G483230 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 3.0e-42
Identity = 82/102 (80.39%), Postives = 97/102 (95.10%), Query Frame = 1


Query: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60
           M++G+GIGG LQIVP+DLSDNTLCDLLVQHV+KHCQ+VLQIDAT+EGFIDGSIEIG+NGK
Sbjct: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60

Query: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 103
           TY  KLKLK+++GDAYV+K VLVK+FFPF+G PS+VSFEYLE
Sbjct: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLE 102

[Close]

BLAST of CSPI06G26340 vs. NCBI nr
Match: gi|700193134|gb|KGN48338.1| (hypothetical protein Csa_6G483240 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 5.7e-41
Identity = 79/102 (77.45%), Postives = 95/102 (93.14%), Query Frame = 1


Query: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60
           M++G+GI G LQIVP+DLSDNTLCDLLVQHVMKHCQ+VLQIDAT+EG IDG IEIG+NGK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 103
           TY+ KLK+K+++GDAYV+K VLVK+FFPF+G PS+VSFEYLE
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLE 102

[Close]

BLAST of CSPI06G26340 vs. NCBI nr
Match: gi|700193133|gb|KGN48337.1| (hypothetical protein Csa_6G483235 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-17
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1


Query: 10  SLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKLKLK 69
           S QI+P+D SD +L +  V  V+ HCQ++ QID  +EG + G  E+G NGKTY+ +LKLK
Sbjct: 8   SKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLK 67

Query: 70  IKVGDAYVIKPVLVKIFFPFIGLPSIVSFE 100
            KVGD YV+K  ++K F P  G PS++SFE
Sbjct: 68  DKVGDRYVLKIGVIKFFCPLFGPPSLLSFE 97

The following BLAST results are available for this feature:

BLAST of CSPI06G26340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G26340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFL5_CUCSA	2.7e-50	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483250 PE=4 SV=1	[more]
A0A0A0KKQ8_CUCSA	2.1e-42	80.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483230 PE=4 SV=1	[more]
A0A0A0KFK8_CUCSA	4.0e-41	77.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483240 PE=4 SV=1	[more]
A0A0A0KIX9_CUCSA	1.1e-17	51.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483235 PE=4 SV=1	[more]

BLAST of CSPI06G26340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G26340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193139\|gb\|KGN48343.1\|	3.9e-50	100.00	hypothetical protein Csa_6G483250 [Cucumis sativus]	[more]
gi\|700193132\|gb\|KGN48336.1\|	3.0e-42	80.39	hypothetical protein Csa_6G483230 [Cucumis sativus]	[more]
gi\|700193134\|gb\|KGN48338.1\|	5.7e-41	77.45	hypothetical protein Csa_6G483240 [Cucumis sativus]	[more]
gi\|700193133\|gb\|KGN48337.1\|	1.5e-17	51.11	hypothetical protein Csa_6G483235 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G26340.1	CSPI06G26340.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G26340	Bhi03G001032	Wax gourd	cpiwgoB628

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G26340	Bottle gourd (USVL1VR-Ls)	cpilsiB439
CSPI06G26340	Melon (DHL92) v3.6.1	cpimedB497
CSPI06G26340	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G26340	Silver-seed gourd	carcpiB0271
CSPI06G26340	Silver-seed gourd	carcpiB0846
CSPI06G26340	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G26340	Watermelon (97103) v2	cpiwmbB433
CSPI06G26340	Cucumber (Gy14) v1	cgycpiB122
CSPI06G26340	Cucurbita maxima (Rimu)	cmacpiB689
CSPI06G26340	Cucurbita moschata (Rifu)	cmocpiB681
CSPI06G26340	Cucurbita moschata (Rifu)	cmocpiB873
CSPI06G26340	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G26340	Melon (DHL92) v3.5.1	cpimeB513
CSPI06G26340	Watermelon (Charleston Gray)	cpiwcgB453
CSPI06G26340	Watermelon (97103) v1	cpiwmB521
CSPI06G26340	Cucurbita pepo (Zucchini)	cpecpiB080
CSPI06G26340	Cucurbita pepo (Zucchini)	cpecpiB503