CSPI06G26230 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G26230
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 23208416 .. 23208940 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTATTTTGGTTCCAGAAGTATCCAACAAAAGTGGCTGGATGCAGAAACAAAAAGGTCCCAACCTTTGACTCAACAAAGAAGAGAAGTTATCTACACTCCACCATACTACTCCGAAACAGACAGCCCTAGACGATCGTATGCGGAGGTGGTATCACAAAAATCTTCGTCTGACTCAGACTCTTTACCATTACATAAAAGAGAATCACATGGTAAGCGAAAAGAAGAGGCAAAAACTGAAAAGAAAGAAGATTTTGACTGGAACAAAGTAGTGGTAATAACAAGACGCTATATTCATGATGATTCGTTTAAGATCATTGATAAACTCAAAAACAAATTGGAATCTGATATCACTTACAAACAGTTCCATGCGGAAAAGGCCATTATTCTTTTCAAAGACACCAGCCAAGCTCAAATTATTCTTTTACCAGATAGGGGACACTTGCAGAGGATTCATTGATGTAGCTCGCGAAACAAAAAATAAAACTGATATCATTAAGGCCAAGATAAAGATCAGACATAA

mRNA sequence

ATGTGTTATTTTGGTTCCAGAAGTATCCAACAAAAGTGGCTGGATGCAGAAACAAAAAGGTCCCAACCTTTGACTCAACAAAGAAGAGAAGTTATCTACACTCCACCATACTACTCCGAAACAGACAGCCCTAGACGATCGTATGCGGAGGTGGTATCACAAAAATCTTCGTCTGACTCAGACTCTTTACCATTACATAAAAGAGAATCACATGGTAAGCGAAAAGAAGAGGCAAAAACTGAAAAGAAAGAAGATTTTGACTGGAACAAAGTAGTGGTAATAACAAGACGCTATATTCATGATGATTCGTTTAAGATCATTGATAAACTCAAAAACAAATTGGAATCTGATATCACTTACAAACAGTTCCATGCGGAAAAGGCCATTATTCTTTTCAAAGACACCAGCCAAGCTCAAATTATTCTTTTACCAGATAGGGGACACTTGCAGAGGATTCATTGA

Coding sequence (CDS)

ATGTGTTATTTTGGTTCCAGAAGTATCCAACAAAAGTGGCTGGATGCAGAAACAAAAAGGTCCCAACCTTTGACTCAACAAAGAAGAGAAGTTATCTACACTCCACCATACTACTCCGAAACAGACAGCCCTAGACGATCGTATGCGGAGGTGGTATCACAAAAATCTTCGTCTGACTCAGACTCTTTACCATTACATAAAAGAGAATCACATGGTAAGCGAAAAGAAGAGGCAAAAACTGAAAAGAAAGAAGATTTTGACTGGAACAAAGTAGTGGTAATAACAAGACGCTATATTCATGATGATTCGTTTAAGATCATTGATAAACTCAAAAACAAATTGGAATCTGATATCACTTACAAACAGTTCCATGCGGAAAAGGCCATTATTCTTTTCAAAGACACCAGCCAAGCTCAAATTATTCTTTTACCAGATAGGGGACACTTGCAGAGGATTCATTGA
Homology
[Close]
BLAST of CSPI06G26230 vs. TrEMBL
Match: A0A0A0KF42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G482730 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.0e-77
Identity = 151/154 (98.05%), Postives = 152/154 (98.70%), Query Frame = 1 

Query: 1   MCYFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSE-TDSPRRSYAEVVSQKSSSD 60
           MCYFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYS  TDSPRRSYAEVVSQKSSSD
Sbjct: 1   MCYFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSSGTDSPRRSYAEVVSQKSSSD 60

Query: 61  SDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNKLESDIT 120
           SDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKN+LESDIT
Sbjct: 61  SDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNQLESDIT 120

Query: 121 YKQFHAEKAIILFKDTSQAQIILLPDRGHLQRIH 154
           YKQFHAEKAIILFKDTSQAQIILLPDRGHLQRIH
Sbjct: 121 YKQFHAEKAIILFKDTSQAQIILLPDRGHLQRIH 154

[Close]
BLAST of CSPI06G26230 vs. TrEMBL
Match: A0A0A0K120_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004025 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-13
Identity = 51/126 (40.48%), Postives = 73/126 (57.94%), Query Frame = 1 

Query: 16  AETKRSQPLTQQRREVIYTPPYYSETDSPRRSYAEVVSQKSSSDSDSLPLHKRESHGKRK 75
           A+ ++    T+ R +   +    SE DSPR+SY +V++  SSSDS S    K      +K
Sbjct: 9   AQKRKMTTTTEDRGKKASSYSSLSELDSPRKSYTKVLTNSSSSDSGS---PKILPSSNKK 68

Query: 76  EEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNKLESDITYKQFHAEKAIILFKDT 135
           EE  T   +  DW K VVITRRY HDD  KI+ KL+ +L+ +ITYK FHAEK  +  +D 
Sbjct: 69  EETPTGAFDSLDWTKTVVITRRYFHDDWKKIMAKLQEQLDLNITYKPFHAEKVAVTIEDK 128

Query: 136 SQAQII 142
           +   ++
Sbjct: 129 NLVNLL 131

[Close]
BLAST of CSPI06G26230 vs. TrEMBL
Match: A0A0A0KNC5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G465580 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-12
Identity = 49/129 (37.98%), Postives = 79/129 (61.24%), Query Frame = 1 

Query: 15  DAETKRS-QPLTQQRREVIYTPPYYSETDSPRRSYAEVVSQKSSSDSDSLPLHKRESHGK 74
           +A  KRS Q     R    Y+    ++ D+PR +Y EV+++ S S+SDS   +  ++  K
Sbjct: 96  EAPQKRSPQTNPSVRGPKAYSYSSSTDFDNPRHTYVEVLTKGSLSNSDSPNSYNADTKEK 155

Query: 75  RKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNKLES-DITYKQFHAEKAIILF 134
           +KE+    K E FDW+K  VIT+R  HDD  KI++KL+ +L+  +ITYK FHAEKA++  
Sbjct: 156 KKEDTTARKFETFDWSKTEVITKRCFHDDWKKIMEKLQEQLDHLNITYKLFHAEKAMVFL 215

Query: 135 KDTSQAQII 142
           ++ +   ++
Sbjct: 216 EEKNMVNLL 224

[Close]
BLAST of CSPI06G26230 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1 

Query: 90  KVVVITRRYIHDDSFKIIDKLKNKLESDITYKQFHAEKAIILFKDTSQAQII 142
           + VV+TRRY HDD  KI++KL  +L++ ++YK FHA KA+I FKD  QA +I
Sbjct: 130 RTVVLTRRYFHDDWEKIVEKLNEQLDTTVSYKPFHANKALICFKDFEQANLI 181

[Close]
BLAST of CSPI06G26230 vs. NCBI nr
Match: gi|700193131|gb|KGN48335.1| (hypothetical protein Csa_6G482730 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 4.3e-77
Identity = 151/154 (98.05%), Postives = 152/154 (98.70%), Query Frame = 1 

Query: 1   MCYFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSE-TDSPRRSYAEVVSQKSSSD 60
           MCYFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYS  TDSPRRSYAEVVSQKSSSD
Sbjct: 1   MCYFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSSGTDSPRRSYAEVVSQKSSSD 60

Query: 61  SDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNKLESDIT 120
           SDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKN+LESDIT
Sbjct: 61  SDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNQLESDIT 120

Query: 121 YKQFHAEKAIILFKDTSQAQIILLPDRGHLQRIH 154
           YKQFHAEKAIILFKDTSQAQIILLPDRGHLQRIH
Sbjct: 121 YKQFHAEKAIILFKDTSQAQIILLPDRGHLQRIH 154

[Close]
BLAST of CSPI06G26230 vs. NCBI nr
Match: gi|700187915|gb|KGN43148.1| (hypothetical protein Csa_7G004025 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 3.4e-13
Identity = 51/126 (40.48%), Postives = 73/126 (57.94%), Query Frame = 1 

Query: 16  AETKRSQPLTQQRREVIYTPPYYSETDSPRRSYAEVVSQKSSSDSDSLPLHKRESHGKRK 75
           A+ ++    T+ R +   +    SE DSPR+SY +V++  SSSDS S    K      +K
Sbjct: 9   AQKRKMTTTTEDRGKKASSYSSLSELDSPRKSYTKVLTNSSSSDSGS---PKILPSSNKK 68

Query: 76  EEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNKLESDITYKQFHAEKAIILFKDT 135
           EE  T   +  DW K VVITRRY HDD  KI+ KL+ +L+ +ITYK FHAEK  +  +D 
Sbjct: 69  EETPTGAFDSLDWTKTVVITRRYFHDDWKKIMAKLQEQLDLNITYKPFHAEKVAVTIEDK 128

Query: 136 SQAQII 142
           +   ++
Sbjct: 129 NLVNLL 131

[Close]
BLAST of CSPI06G26230 vs. NCBI nr
Match: gi|700195958|gb|KGN51135.1| (hypothetical protein Csa_5G465580 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 4.9e-12
Identity = 49/129 (37.98%), Postives = 79/129 (61.24%), Query Frame = 1 

Query: 15  DAETKRS-QPLTQQRREVIYTPPYYSETDSPRRSYAEVVSQKSSSDSDSLPLHKRESHGK 74
           +A  KRS Q     R    Y+    ++ D+PR +Y EV+++ S S+SDS   +  ++  K
Sbjct: 96  EAPQKRSPQTNPSVRGPKAYSYSSSTDFDNPRHTYVEVLTKGSLSNSDSPNSYNADTKEK 155

Query: 75  RKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNKLES-DITYKQFHAEKAIILF 134
           +KE+    K E FDW+K  VIT+R  HDD  KI++KL+ +L+  +ITYK FHAEKA++  
Sbjct: 156 KKEDTTARKFETFDWSKTEVITKRCFHDDWKKIMEKLQEQLDHLNITYKLFHAEKAMVFL 215

Query: 135 KDTSQAQII 142
           ++ +   ++
Sbjct: 216 EEKNMVNLL 224

[Close]
BLAST of CSPI06G26230 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-07
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1 

Query: 90  KVVVITRRYIHDDSFKIIDKLKNKLESDITYKQFHAEKAIILFKDTSQAQII 142
           + VV+TRRY HDD  KI++KL  +L++ ++YK FHA KA+I FKD  QA +I
Sbjct: 130 RTVVLTRRYFHDDWEKIVEKLNEQLDTTVSYKPFHANKALICFKDFEQANLI 181

The following BLAST results are available for this feature:
BLAST of CSPI06G26230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G26230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF42_CUCSA3.0e-7798.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G482730 PE=4 SV=1[more]
A0A0A0K120_CUCSA2.3e-1340.48Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004025 PE=4 SV=1[more]
A0A0A0KNC5_CUCSA3.4e-1237.98Uncharacterized protein OS=Cucumis sativus GN=Csa_5G465580 PE=4 SV=1[more]
E5GB30_CUCME1.5e-0753.85Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of CSPI06G26230 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G26230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193131|gb|KGN48335.1|4.3e-7798.05hypothetical protein Csa_6G482730 [Cucumis sativus][more]
gi|700187915|gb|KGN43148.1|3.4e-1340.48hypothetical protein Csa_7G004025 [Cucumis sativus][more]
gi|700195958|gb|KGN51135.1|4.9e-1237.98hypothetical protein Csa_5G465580 [Cucumis sativus][more]
gi|307135793|gb|ADN33672.1|2.1e-0753.85hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G26230.1CSPI06G26230.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G26230CsaV3_6G041450Cucumber (Chinese Long) v3cpicucB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G26230Cucumber (Chinese Long) v2cpicuB313
CSPI06G26230Melon (DHL92) v3.5.1cpimeB513
CSPI06G26230Watermelon (Charleston Gray)cpiwcgB453
CSPI06G26230Watermelon (97103) v1cpiwmB521
CSPI06G26230Cucurbita pepo (Zucchini)cpecpiB080
CSPI06G26230Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G26230Melon (DHL92) v3.6.1cpimedB497
CSPI06G26230Cucumber (Gy14) v2cgybcpiB287
CSPI06G26230Silver-seed gourdcarcpiB0271
CSPI06G26230Silver-seed gourdcarcpiB0846
CSPI06G26230Watermelon (97103) v2cpiwmbB433
CSPI06G26230Wax gourdcpiwgoB628
CSPI06G26230Cucumber (Gy14) v1cgycpiB122
CSPI06G26230Cucurbita maxima (Rimu)cmacpiB689
CSPI06G26230Cucurbita moschata (Rifu)cmocpiB681
CSPI06G26230Cucurbita moschata (Rifu)cmocpiB873