CSPI06G25930 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G25930
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr6 : 22960834 .. 22962347 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATCAAGATCTTTGGGATATTGTTGACATTGGATATTTCAGAGCCAGAAAGTGAGAATGGTCTTTCAGCACAACAACTCAATGAGTTAAGAGATGCTAGAAAAAAGGATAAGAATGCATTATTTTTCATGTACCAAGCTGTGGATGAAAATATTTTTGAAAGAATATCATGAGTCTCTACTGCTAAAGCAGCATGGGATGCATTGCAAAATTTGTATGAAGGAGAAGAAAAGGTAAAATTGGTTCGATTACAAACACTTAAAGCTGAATTTGATACAATTCGAATGAAAGATTCTGAAACTATTAAAGAATTTTTTAACCGTGTGCTCTTAATTGTTAATCAATTGAGATCAAATGGAGAAACAATTGAAGATCAAAGGATTGTTGAGAAGATTCTTAGAAGCATGACTAGAAGATATGAGCATATTGTTGTAGCAATTGAAGAATCCAAAGATTTGTCAACTCTCTCTATAAATAGCTTAATGGGATCTCTTCAATCTCATGAGCTCAGATTGAAGATGTTTGATTCTAATCCTTCAGAAGAAGCTTTTCATATGCAGTCCTCCTATAGAGGTCGATCCAATGGAAGAAGAGGTGGACGTGGTGGTAGAGGCAATGGACGATCCAACGTTGTAACAAATACAGAGTCAGAAAGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAATAGAGGAAGAGGTAGAAGTGGTGGTCGTGGAGATTTTTCTCACATACAATGTTTCAATTGTAGACGTTATGGACATTTTCAAGCAGACTGTTGGTCTAAGAAGGCTAATTCTAATCAAGCAGAAACCACGCTAATGCATGAACAATCAAATAATGATCAAGGTCTTCTCTTCCTCACTCTCAATGTTCAACAATCAAGCACTAAAGAAATATGGTATCTTGATAGTGGTTGTAGTAACCACATGACAGGAAGAAAGGATATTTTTATATCTTTAGATGAATCTCATCAAAATGTAGTGAAGACTGGTGACAACAAGATGCTTGAAGTCAAAGGAAAAGGAGATATTCTTGTCAAGACAAAAAGGGGAGCAAAAAGAATTACTGATGTGTATTATGTTTCAGGTCTCAAACACAATCTTTTAAGTGTTGGCCAACTTCTCCTAAGAGGACATGAGGTTATCTTTAAAGATAACATATGTGAGATTAGAACCAAGAATGGAGATCTCATAACGAAGGTTCGTATGACTCACAACAAAATGTTTCCAATTAAAATATGTTATGAGAAGCTTGTTTGTTTTGAGACTTTAGTAAATGACACCTCATGGTTATGACATTGTCGATTTGGGCACCTAAGTTTTGACACTTTGTCTCACATGTGTCAACAACATATGGTGAGAGGAATGTCAAATATTAAAAAGGAAGATCAACTCTGTGAAGCATGTGTTTTGCATCATCGTCATTTCCGACTGGAGGTTCTTGGAGAGCATCAAAACCACTCGAGCTTGTTCATACAGACTTATGTGGACCTATGA

mRNA sequence

ATGGATATCAAGATCTTTGGGATATTGTTGACATTGGATATTTCAGAGCCAGAAAGTGAGAATGTCTCTACTGCTAAAGCAGCATGGGATGCATTGCAAAATTTGTATGAAGGAGAAGAAAAGGTAAAATTGGTTCGATTACAAACACTTAAAGCTGAATTTGATACAATTCGAATGAAAGATTCTGAAACTATTAAAGAATTTTTTAACCGTGTGCTCTTAATTGTTAATCAATTGAGATCAAATGGAGAAACAATTGAAGATCAAAGGATTGTTGAGAAGATTCTTAGAAGCATGACTAGAAGATATGAGCATATTGTTGTAGCAATTGAAGAATCCAAAGATTTGTCAACTCTCTCTATAAATAGCTTAATGGGATCTCTTCAATCTCATGAGCTCAGATTGAAGATGTTTGATTCTAATCCTTCAGAAGAAGCTTTTCATATGCAGTCCTCCTATAGAGGTCGATCCAATGGAAGAAGAGGTGGACGTGGTGGTAGAGGCAATGGACGATCCAACGTTGTAACAAATACAGAACGTTATGGACATTTTCAAGCAGACTGTTGGTCTAAGAAGGCTAATTCTAATCAAGCAGAAACCACGCTAATGCATGAACAATCAAATAATGATCAAGGTCTTCTCTTCCTCACTCTCAATGTTCAACAATCAAGCACTAAAGAAATATGGTATCTTGATAGTGGTTGTAGTAACCACATGACAGGAAGAAAGGATATTTTTATATCTTTAGATGAATCTCATCAAAATGTAGTGAAGACTGGTGACAACAAGATGCTTGAAGTCAAAGGAAAAGGAGATATTCTTGTCAAGACAAAAAGGGGAGCAAAAAGAATTACTGATGTGTATTATGTTTCAGGTCTCAAACACAATCTTTTAAGTGTTGGCCAACTTCTCCTAAGAGGACATGAGGTTATCTTTAAAGATAACATATGTGAGATTAGAACCAAGAATGGAGATCTCATAACGAAGGAAGATCAACTCTGTGAAGCATGTGTTTTGCATCATCGTCATTTCCGACTGGAGGTTCTTGGAGAGCATCAAAACCACTCGAGCTTGTTCATACAGACTTATGTGGACCTATGA

Coding sequence (CDS)

ATGGATATCAAGATCTTTGGGATATTGTTGACATTGGATATTTCAGAGCCAGAAAGTGAGAATGTCTCTACTGCTAAAGCAGCATGGGATGCATTGCAAAATTTGTATGAAGGAGAAGAAAAGGTAAAATTGGTTCGATTACAAACACTTAAAGCTGAATTTGATACAATTCGAATGAAAGATTCTGAAACTATTAAAGAATTTTTTAACCGTGTGCTCTTAATTGTTAATCAATTGAGATCAAATGGAGAAACAATTGAAGATCAAAGGATTGTTGAGAAGATTCTTAGAAGCATGACTAGAAGATATGAGCATATTGTTGTAGCAATTGAAGAATCCAAAGATTTGTCAACTCTCTCTATAAATAGCTTAATGGGATCTCTTCAATCTCATGAGCTCAGATTGAAGATGTTTGATTCTAATCCTTCAGAAGAAGCTTTTCATATGCAGTCCTCCTATAGAGGTCGATCCAATGGAAGAAGAGGTGGACGTGGTGGTAGAGGCAATGGACGATCCAACGTTGTAACAAATACAGAACGTTATGGACATTTTCAAGCAGACTGTTGGTCTAAGAAGGCTAATTCTAATCAAGCAGAAACCACGCTAATGCATGAACAATCAAATAATGATCAAGGTCTTCTCTTCCTCACTCTCAATGTTCAACAATCAAGCACTAAAGAAATATGGTATCTTGATAGTGGTTGTAGTAACCACATGACAGGAAGAAAGGATATTTTTATATCTTTAGATGAATCTCATCAAAATGTAGTGAAGACTGGTGACAACAAGATGCTTGAAGTCAAAGGAAAAGGAGATATTCTTGTCAAGACAAAAAGGGGAGCAAAAAGAATTACTGATGTGTATTATGTTTCAGGTCTCAAACACAATCTTTTAAGTGTTGGCCAACTTCTCCTAAGAGGACATGAGGTTATCTTTAAAGATAACATATGTGAGATTAGAACCAAGAATGGAGATCTCATAACGAAGGAAGATCAACTCTGTGAAGCATGTGTTTTGCATCATCGTCATTTCCGACTGGAGGTTCTTGGAGAGCATCAAAACCACTCGAGCTTGTTCATACAGACTTATGTGGACCTATGA

Homology

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BLAST of CSPI06G25930 vs. TrEMBL
Match: A6YTD9_CUCME (Integrase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 6.7e-75
Identity = 174/361 (48.20%), Postives = 217/361 (60.11%), Query Frame = 1


Query: 14  ISEPESENVSTA---KAAWDALQNLYEGEEKVKLVRLQTLKAEFDTIRMKDSETIKEFFN 73
           + E  SE +STA   KAAWD L++ Y+GE+KVK++RLQ L++EFD I+MK++ETI+EFFN
Sbjct: 79  VDEFISERISTATSAKAAWDILRSTYQGEDKVKMIRLQALRSEFDCIKMKETETIEEFFN 138

Query: 74  RVLLIVNQLRSNGETIEDQRIVEKILRSMTRRYEHIVVAIEESKDLSTLSINSLMGSLQS 133
            +L+IVN LRSNGE + DQR+VEKILRSM R++EHIVVAIEESKDLSTLSINSLMGSLQS
Sbjct: 139 HILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHIVVAIEESKDLSTLSINSLMGSLQS 198

Query: 134 HELRLKMFDSNP-------------------------------------SEEAFHMQSSY 193
           HELRLK FD NP                                     SE +    S  
Sbjct: 199 HELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGRRGGGRNYDNRSGANSENSQESSSLS 258

Query: 194 RGRSNGRRGG-----RGGRGNGRSNVVTNTERYGHFQADCWSKKANSNQAETTLMHEQSN 253
           RGR +GRR G      GGRGN       N  +YGHFQADCW+ K         +  EQ  
Sbjct: 259 RGRGSGRRRGFGRNQGGGRGNFSQIQCFNCRKYGHFQADCWALKNGVGNTTMNMHKEQKK 318

Query: 254 NDQGLLFLTLNVQQSSTKEIWYLDSGCSNHMTGRKDIFISLDESHQNVVKTGDNKMLEVK 313
           ND+G+LFL  +VQ +  K                               + GDN  L+VK
Sbjct: 319 NDEGILFLACSVQDNVVKP----------------------------TCEDGDNTRLQVK 378

Query: 314 GKGDILVKTKRGAKRITDVYYVSGLKHNLLSVGQLLLRGHEVIFKDNICEIRTKNGDLIT 330
           G+GDILVKTK+  KR+T+V+YV GLKHNLLS+GQLL RG +V F+ +IC I+ +   LI+
Sbjct: 379 GQGDILVKTKKRTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIKDQADVLIS 411

[Close]

BLAST of CSPI06G25930 vs. TrEMBL
Match: A0A068B703_GOSBA (Polyprotein OS=Gossypium barbadense PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.7e-62
Identity = 144/367 (39.24%), Postives = 209/367 (56.95%), Query Frame = 1


Query: 21  NVSTAKAAWDALQNLYEGEEKVKLVRLQTLKAEFDTIRMKDSETIKEFFNRVLLIVNQLR 80
           +V  AK AW+ LQ  ++G EK K VRLQ+L+AEF+ ++MK SE I ++ NRV  +VN+++
Sbjct: 89  DVKNAKNAWEILQKSFQGVEKAKKVRLQSLRAEFEMLKMKSSENIDDYANRVKSVVNEMK 148

Query: 81  SNGETIEDQRIVEKILRSMTRRYEHIVVAIEESKDLSTLSINSLMGSLQSHELRLKMF-D 140
            NGET+++ R++EKILRS+TR++E++VVAIEESKDLS +S+  L+GSLQ+HE ++K+  D
Sbjct: 149 RNGETLDEVRVMEKILRSLTRKFEYVVVAIEESKDLSKMSLEELVGSLQAHEQKMKLNED 208

Query: 141 SNPSEEAFHMQSS-----------------------YRGRSNGRRG-------------- 200
           S    +A H + S                       YRG + G RG              
Sbjct: 209 SENLNQALHSKLSIDDGETSNNFSQGRGNRRGYRGGYRGGNRGGRGSRGRGNQSYGRYQE 268

Query: 201 ---------GRGGRGNGRSNVVTNTE--------RYGHFQADCWSKKANSNQAETTLMHE 260
                    GRG RG GR     N          +YGHF  +C S      +    +  E
Sbjct: 269 NKDYQTSNRGRGSRGRGRGRFQENKSQVQCYNCNKYGHFSYECRSTHKVDERNHVAVAAE 328

Query: 261 QSNNDQGLLFLTLNVQQSSTKEIWYLDSGCSNHMTGRKDIFISLDESHQNVVKTGDNKML 320
            +   +  +FLT    +   + +WYLD+G SNHM GRK++F  LDE+    +  GDN   
Sbjct: 329 GNEKVESSVFLTYGENEDRKRSVWYLDNGASNHMCGRKELFTELDETVHGQITFGDNSHA 388

Query: 321 EVKGKGDILVKTKRGAKR-ITDVYYVSGLKHNLLSVGQLLLRGHEVIFKDNICEIRTKNG 332
           E+KGKG +++  + G K+ I+DVYYV  LK NL+S+GQLL +G+EV  KD    IR K+G
Sbjct: 389 EIKGKGKVVITQRNGEKKYISDVYYVPALKSNLISLGQLLEKGYEVHMKDRSLAIRNKSG 448

[Close]

BLAST of CSPI06G25930 vs. TrEMBL
Match: A5AWP3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020777 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 6.5e-62
Identity = 138/318 (43.40%), Postives = 193/318 (60.69%), Query Frame = 1


Query: 23  STAKAAWDALQNLYEGEEKVKLVRLQTLKAEFDTIRMKDSETIKEFFNRVLLIVNQLRSN 82
           +TAK AW  L+  ++G  KV  V+LQ+L+ +F+T+ MK+ E++++F +RV  IVNQ+RS 
Sbjct: 87  TTAKEAWTTLKTAFQGSSKVITVKLQSLRRDFETLHMKNGESVQDFLSRVAAIVNQMRSY 146

Query: 83  GETIEDQRIVEKILRSMTRRYEHIVVAIEESKDLSTLSINSLMGSLQSHELRLKMFDSNP 142
           GE I DQ +V K+LRS+T +++H+V AIEESKDLST S + LMGSLQSHE+RL   +   
Sbjct: 147 GEDILDQTVVAKVLRSLTPKFDHVVAAIEESKDLSTYSFDELMGSLQSHEVRLSRTEEKN 206

Query: 143 SEEAFHMQSSYRGRSNGRR------------GGRGGRGNGRSNVVTNTERYGHFQADCWS 202
            E+ F+ +     + NG R             GRGGRG GR          G  Q +CW 
Sbjct: 207 EEKXFYTKGETSDQKNGGREATGRGCGRGGAHGRGGRGRGR----------GDAQXECWK 266

Query: 203 KKANSNQAETTLMHEQSNNDQGLLFLTLNVQQSSTKEIWYLDSGCSNHMTGRKDIFISLD 262
           K+    QA     + +   DQ  LF+  N +  S+  IW+LDSGCSNHMTG K +F  LD
Sbjct: 267 KERQEKQAN----YVEQEEDQVKLFMAYNEEVVSSNNIWFLDSGCSNHMTGIKSLFKELD 326

Query: 263 ESHQNVVKTGDNKMLEVKGKGDILVKTKRG-AKRITDVYYVSGLKHNLLSVGQLLLRGHE 322
           ESH+  VK GD+K ++V+GKG   V    G  K + +VY++  L  NLLSVGQL++ G+ 
Sbjct: 327 ESHKLKVKLGDDKQVQVEGKGTXAVNNGHGNVKLLYNVYFIPSLTQNLLSVGQLMVSGYS 386

Query: 323 VIFKDNICEIRTKNGDLI 328
           ++F    C I+ K  D I
Sbjct: 387 ILFDGATCVIKDKKSDQI 390

[Close]

BLAST of CSPI06G25930 vs. TrEMBL
Match: Q6L3N8_SOLDE (Putative gag-pol polyprotein, identical OS=Solanum demissum GN=SDM1_42t00010 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.2e-58
Identity = 131/331 (39.58%), Postives = 199/331 (60.12%), Query Frame = 1


Query: 17  PESENVSTAKAAWDALQNLYEGEEKVKLVRLQTLKAEFDTIRMKDSETIKEFFNRVLLIV 76
           P    V T+K AW+ L+  Y G++KV  V+LQTL+ +F+T+ M ++E+++ + +R   IV
Sbjct: 78  PRISAVETSKQAWEILKQEYFGDDKVITVKLQTLRRDFETLFMNENESVQGYLSRTSAIV 137

Query: 77  NQLRSNGETIEDQRIVEKILRSMTRRYEHIVVAIEESKDLSTLSINSLMGSLQSHELRLK 136
           N++RS GE I++Q +V K+LRS+T ++EH+V AIEESKDLST S + LM SL +HE RL 
Sbjct: 138 NRMRSYGEKIDNQIVVSKVLRSLTTKFEHVVTAIEESKDLSTYSFDELMSSLLAHEDRLN 197

Query: 137 MFDSNPSEEAFHMQSSY-------------RGRSNGRRGGRGGRGNGRSNV--------- 196
                  E+AF ++  +              GR N R  GRGG G GR+ V         
Sbjct: 198 RSREKVQEKAFQVKGEFSYKGKAENSAGRGHGRGNFRGRGRGGSGRGRNQVGEFRQYKSN 257

Query: 197 --VTNTERYGHFQADCWSKKANSNQAETTLMHEQSNNDQGLLFLTLNVQQSSTKEIWYLD 256
                 +++GH + DCW+K+ +  +        Q+  ++  LF+  +    S   +W++D
Sbjct: 258 IQCRYCKKFGHKEVDCWTKQKDEQKDAN---FTQNVEEESKLFMASSQITESANAVWFID 317

Query: 257 SGCSNHMTGRKDIFISLDESHQNVVKTGDNKMLEVKGKGDILVKTKRG-AKRITDVYYVS 316
           SGCSNHM+  K +F  LDES ++ V+ GD+K + ++GKG + +KT +G  K + DV YV 
Sbjct: 318 SGCSNHMSSSKSLFRDLDESQKSEVRLGDDKQVHIEGKGTVEIKTVQGNVKFLYDVQYVP 377

Query: 317 GLKHNLLSVGQLLLRGHEVIFKDNICEIRTK 323
            L HNLLSVGQL+  G+ V+F DN C+I+ K
Sbjct: 378 TLAHNLLSVGQLMTSGYSVVFYDNACDIKDK 405

[Close]

BLAST of CSPI06G25930 vs. TrEMBL
Match: A0A151RW17_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_031647 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.6e-58
Identity = 137/343 (39.94%), Postives = 216/343 (62.97%), Query Frame = 1


Query: 24  TAKAAWDALQNLYEGEEKVKLVRLQTLKAEFDTIRMKDSETIKEFFNRVLLIVNQLRSNG 83
           TAK AWD L   Y G E++K VRLQTL+ +++ ++M + ETI+E+F+++  + N ++S G
Sbjct: 94  TAKEAWDILAQSYAGVERLKTVRLQTLRRQYELLQMGNQETIQEYFSQLQSLTNLMKSCG 153

Query: 84  ETIEDQRIVEKILRSMTRRYEHIVVAIEESKDLSTLSINSLMGSLQSHELRLK------- 143
           E I+++ IVEK+LR++  +++ I +AIEESK+L +L +  L GSL+++E RL+       
Sbjct: 154 ENIKERTIVEKVLRTLDTKFDMIAIAIEESKNLDSLKLEELQGSLEAYEQRLRERNGDKS 213

Query: 144 ------MFDSNPSEEAFHMQSSYRGRSNGRRGG-RGGRGNGRSNV-VTNTERYGHFQADC 203
                 +   N   E+   + + RGR  G RGG  GG G+ +S+V   N  +YGH+ +DC
Sbjct: 214 GSEQALLAKQNKKAESNRGKFNKRGRGRGFRGGYNGGSGSDKSHVQCYNCNKYGHYASDC 273

Query: 204 WSKK-ANSNQAETTLMHEQSNNDQGLLFLTLNVQQSST-KEIWYLDSGCSNHMTGRKDIF 263
           WSK+ +NS + E  +  ++ + D+ LL +T    +  T  E WYLD+GCSNHM+ +K  F
Sbjct: 274 WSKEGSNSKEEEVNVAQKEESEDEVLLMVTTEKPEKKTLSESWYLDTGCSNHMSFQKKWF 333

Query: 264 ISLDESHQNVVKTGDNKMLEVKGKGDILVKTKRGAKR-ITDVYYVSGLKHNLLSVGQLLL 323
           I+L+E  ++ VK  DN  +E +GKG IL++ K G    I+DV YV  +KHNLLS+GQLL 
Sbjct: 334 INLNEKIKSKVKFADNSTVECEGKGKILIRRKDGKTTVISDVLYVPAMKHNLLSIGQLLQ 393

Query: 324 RGHEVIFKDNICEIRTKNGDLITKEDQLCEACVLHHRHFRLEV 349
           +G+ + +KD +  I  KNG  I K      A + ++R FR+++
Sbjct: 394 KGYLIDWKDQMLRILDKNGSPILK------APLSNNRTFRVDI 430

[Close]

BLAST of CSPI06G25930 vs. TAIR10
Match: AT3G20980.1 (AT3G20980.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-08
Identity = 37/90 (41.11%), Postives = 48/90 (53.33%), Query Frame = 1


Query: 226 KEIWYLDSGCSNHMTGRKDIFISLDESHQNVVK--TGDNK---MLEVKGKGDILVKTKRG 285
           + IW + S  SNHMT     F +LD S +  VK  +GD     +  V+G GD+   T  G
Sbjct: 266 ENIWLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDKSETTVAMVEGIGDVTFITNEG 325

Query: 286 AKRITDVYYVSGLKHNLLSVGQLLLRGHEV 311
            K I +V YV G++ N LSV QL   G EV
Sbjct: 326 NKTIKNVLYVPGIEGNALSVSQLKRNGFEV 355

[Close]

BLAST of CSPI06G25930 vs. TAIR10
Match: AT3G21000.1 (AT3G21000.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-08
Identity = 65/297 (21.89%), Postives = 133/297 (44.78%), Query Frame = 1


Query: 21  NVSTAKAAWDALQNLYEGEEKVKLVRLQT-----LKAEFDTIRMKDSETIKEFFNRVLLI 80
           + S+AK  WD L+   +G E+  + RL+      L+ + + ++M D E+   + ++ L I
Sbjct: 91  SASSAKDVWDLLR---KGNEQATIRRLEQVTIRRLEKQLEDLKMVDKESGSSYLDKALEI 150

Query: 81  VNQLRSNGETIEDQRIVEKILRSMTRRYEHIVVAIEESKDLSTLSINSLMGSLQSHELRL 140
           + +L        D  I + +  +++  ++ +   +EE  D+  ++  SL+          
Sbjct: 151 LERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKMTSKSLV-----EYFYY 210

Query: 141 KMFDSNPSEEAFHMQSSYRGRSNGRRG-GRGGRGNGRSNVVTNTERYGHFQADCWSKKAN 200
           ++ +S+  E  F +    R +S   +  G   + N             H Q DC  +   
Sbjct: 211 RVHESSTEEAIFGLLKDLRLKSKSEKWCGLCYKNN-------------HNQEDCKFRIHT 270

Query: 201 SNQAETTLMHEQSNNDQGLLFLTLNVQQSSTKEIWYLDSGCSNHMTGRKDIFISLDESHQ 260
             + +     ++   D  L  +     ++   +IW +      +MT     F +LD + +
Sbjct: 271 DKEEK----EDEIVVDYRLETVPNLGAKTYDDDIWIIHKMAPINMTPYVKYFTTLDRTFK 330

Query: 261 NVVKTGDNKMLEVKGKGDILVKTKRGAKR-ITDVYYVSGLKHNLLSVGQLLLRGHEV 311
             V T D  +L V+GKGD+ ++ K G K+ I +V +V GL  N+LS G+++ + + +
Sbjct: 331 ATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGLNRNVLSFGKMVSKRYSI 362

[Close]

BLAST of CSPI06G25930 vs. NCBI nr
Match: gi|659099180|ref|XP_008450471.1| (PREDICTED: uncharacterized protein LOC103492064 [Cucumis melo])

HSP 1 Score: 369.4 bits (947), Expect = 7.3e-99
Identity = 198/350 (56.57%), Postives = 250/350 (71.43%), Query Frame = 1


Query: 20  ENVSTA---KAAWDALQNLYEGEEKVKLVRLQTLKAEFDTIRMKDSETIKEFFNRVLLIV 79
           E +STA   KAAWD L++ Y+GE+KVK++RLQ L++EFD I+MK++E I+EFFNR+L+IV
Sbjct: 85  ERISTATSAKAAWDILRSTYQGEDKVKMIRLQALRSEFDCIKMKETEPIEEFFNRILVIV 144

Query: 80  NQLRSNGETIEDQRIVEKILRSMTRRYEHIVVAIEESKDLSTLSINSLMGSLQSHELRLK 139
           N LRSNGE + DQR+VEKILRSM R++EHI+VAIEESKDLST SINSLMGSLQSHELRLK
Sbjct: 145 NSLRSNGEEVGDQRVVEKILRSMPRKFEHIIVAIEESKDLSTFSINSLMGSLQSHELRLK 204

Query: 140 MFDSNPSEEAFHMQSSYRGRSNGRRGGRGGRGNGR------------SNVVTNTER---- 199
            FD +P EEAF MQ+S+RG S GRRGG G RG+GR            S  +++  R    
Sbjct: 205 QFDVDP-EEAFQMQTSFRGGSRGRRGGHGRRGDGRNYDNRSGANSENSQEISSLSRGRGF 264

Query: 200 ---------------------YGHFQADCWSKKANSNQAETTLMHEQSNNDQGLLFLTLN 259
                                YGHFQADCW+ K         +  EQ  ND+G+LFL  +
Sbjct: 265 GRNQGGGRGNFSQIQCFKCRKYGHFQADCWALKNGVGNTTMNMHKEQKKNDEGILFLACS 324

Query: 260 VQQSSTKEIWYLDSGCSNHMTGRKDIFISLDESHQNVVKTGDNKMLEVKGKGDILVKTKR 319
           VQ +  +  WYLDSGCSNHMTG ++IF++LDES Q+ VKTGDN  L+VKG+GDILVKTK+
Sbjct: 325 VQDNVVEPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKK 384

Query: 320 GAKRITDVYYVSGLKHNLLSVGQLLLRGHEVIFKDNICEIRTKNGDLITK 330
           G KR+T+V+YV GLKHNLLS+GQLL +G +V F+ +IC I+ + G LI K
Sbjct: 385 GTKRVTNVFYVPGLKHNLLSIGQLLQQGLKVSFEGDICAIKDQAGVLIAK 433

[Close]

BLAST of CSPI06G25930 vs. NCBI nr
Match: gi|150036244|gb|ABR67407.1| (integrase [Cucumis melo subsp. melo])

HSP 1 Score: 289.3 bits (739), Expect = 9.6e-75
Identity = 174/361 (48.20%), Postives = 217/361 (60.11%), Query Frame = 1


Query: 14  ISEPESENVSTA---KAAWDALQNLYEGEEKVKLVRLQTLKAEFDTIRMKDSETIKEFFN 73
           + E  SE +STA   KAAWD L++ Y+GE+KVK++RLQ L++EFD I+MK++ETI+EFFN
Sbjct: 79  VDEFISERISTATSAKAAWDILRSTYQGEDKVKMIRLQALRSEFDCIKMKETETIEEFFN 138

Query: 74  RVLLIVNQLRSNGETIEDQRIVEKILRSMTRRYEHIVVAIEESKDLSTLSINSLMGSLQS 133
            +L+IVN LRSNGE + DQR+VEKILRSM R++EHIVVAIEESKDLSTLSINSLMGSLQS
Sbjct: 139 HILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHIVVAIEESKDLSTLSINSLMGSLQS 198

Query: 134 HELRLKMFDSNP-------------------------------------SEEAFHMQSSY 193
           HELRLK FD NP                                     SE +    S  
Sbjct: 199 HELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGRRGGGRNYDNRSGANSENSQESSSLS 258

Query: 194 RGRSNGRRGG-----RGGRGNGRSNVVTNTERYGHFQADCWSKKANSNQAETTLMHEQSN 253
           RGR +GRR G      GGRGN       N  +YGHFQADCW+ K         +  EQ  
Sbjct: 259 RGRGSGRRRGFGRNQGGGRGNFSQIQCFNCRKYGHFQADCWALKNGVGNTTMNMHKEQKK 318

Query: 254 NDQGLLFLTLNVQQSSTKEIWYLDSGCSNHMTGRKDIFISLDESHQNVVKTGDNKMLEVK 313
           ND+G+LFL  +VQ +  K                               + GDN  L+VK
Sbjct: 319 NDEGILFLACSVQDNVVKP----------------------------TCEDGDNTRLQVK 378

Query: 314 GKGDILVKTKRGAKRITDVYYVSGLKHNLLSVGQLLLRGHEVIFKDNICEIRTKNGDLIT 330
           G+GDILVKTK+  KR+T+V+YV GLKHNLLS+GQLL RG +V F+ +IC I+ +   LI+
Sbjct: 379 GQGDILVKTKKRTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIKDQADVLIS 411

[Close]

BLAST of CSPI06G25930 vs. NCBI nr
Match: gi|651219311|gb|AIC77183.1| (polyprotein [Gossypium barbadense])

HSP 1 Score: 248.1 bits (632), Expect = 2.5e-62
Identity = 144/367 (39.24%), Postives = 209/367 (56.95%), Query Frame = 1


Query: 21  NVSTAKAAWDALQNLYEGEEKVKLVRLQTLKAEFDTIRMKDSETIKEFFNRVLLIVNQLR 80
           +V  AK AW+ LQ  ++G EK K VRLQ+L+AEF+ ++MK SE I ++ NRV  +VN+++
Sbjct: 89  DVKNAKNAWEILQKSFQGVEKAKKVRLQSLRAEFEMLKMKSSENIDDYANRVKSVVNEMK 148

Query: 81  SNGETIEDQRIVEKILRSMTRRYEHIVVAIEESKDLSTLSINSLMGSLQSHELRLKMF-D 140
            NGET+++ R++EKILRS+TR++E++VVAIEESKDLS +S+  L+GSLQ+HE ++K+  D
Sbjct: 149 RNGETLDEVRVMEKILRSLTRKFEYVVVAIEESKDLSKMSLEELVGSLQAHEQKMKLNED 208

Query: 141 SNPSEEAFHMQSS-----------------------YRGRSNGRRG-------------- 200
           S    +A H + S                       YRG + G RG              
Sbjct: 209 SENLNQALHSKLSIDDGETSNNFSQGRGNRRGYRGGYRGGNRGGRGSRGRGNQSYGRYQE 268

Query: 201 ---------GRGGRGNGRSNVVTNTE--------RYGHFQADCWSKKANSNQAETTLMHE 260
                    GRG RG GR     N          +YGHF  +C S      +    +  E
Sbjct: 269 NKDYQTSNRGRGSRGRGRGRFQENKSQVQCYNCNKYGHFSYECRSTHKVDERNHVAVAAE 328

Query: 261 QSNNDQGLLFLTLNVQQSSTKEIWYLDSGCSNHMTGRKDIFISLDESHQNVVKTGDNKML 320
            +   +  +FLT    +   + +WYLD+G SNHM GRK++F  LDE+    +  GDN   
Sbjct: 329 GNEKVESSVFLTYGENEDRKRSVWYLDNGASNHMCGRKELFTELDETVHGQITFGDNSHA 388

Query: 321 EVKGKGDILVKTKRGAKR-ITDVYYVSGLKHNLLSVGQLLLRGHEVIFKDNICEIRTKNG 332
           E+KGKG +++  + G K+ I+DVYYV  LK NL+S+GQLL +G+EV  KD    IR K+G
Sbjct: 389 EIKGKGKVVITQRNGEKKYISDVYYVPALKSNLISLGQLLEKGYEVHMKDRSLAIRNKSG 448

[Close]

BLAST of CSPI06G25930 vs. NCBI nr
Match: gi|147789988|emb|CAN71759.1| (hypothetical protein VITISV_020777 [Vitis vinifera])

HSP 1 Score: 246.1 bits (627), Expect = 9.3e-62
Identity = 138/318 (43.40%), Postives = 193/318 (60.69%), Query Frame = 1


Query: 23  STAKAAWDALQNLYEGEEKVKLVRLQTLKAEFDTIRMKDSETIKEFFNRVLLIVNQLRSN 82
           +TAK AW  L+  ++G  KV  V+LQ+L+ +F+T+ MK+ E++++F +RV  IVNQ+RS 
Sbjct: 87  TTAKEAWTTLKTAFQGSSKVITVKLQSLRRDFETLHMKNGESVQDFLSRVAAIVNQMRSY 146

Query: 83  GETIEDQRIVEKILRSMTRRYEHIVVAIEESKDLSTLSINSLMGSLQSHELRLKMFDSNP 142
           GE I DQ +V K+LRS+T +++H+V AIEESKDLST S + LMGSLQSHE+RL   +   
Sbjct: 147 GEDILDQTVVAKVLRSLTPKFDHVVAAIEESKDLSTYSFDELMGSLQSHEVRLSRTEEKN 206

Query: 143 SEEAFHMQSSYRGRSNGRR------------GGRGGRGNGRSNVVTNTERYGHFQADCWS 202
            E+ F+ +     + NG R             GRGGRG GR          G  Q +CW 
Sbjct: 207 EEKXFYTKGETSDQKNGGREATGRGCGRGGAHGRGGRGRGR----------GDAQXECWK 266

Query: 203 KKANSNQAETTLMHEQSNNDQGLLFLTLNVQQSSTKEIWYLDSGCSNHMTGRKDIFISLD 262
           K+    QA     + +   DQ  LF+  N +  S+  IW+LDSGCSNHMTG K +F  LD
Sbjct: 267 KERQEKQAN----YVEQEEDQVKLFMAYNEEVVSSNNIWFLDSGCSNHMTGIKSLFKELD 326

Query: 263 ESHQNVVKTGDNKMLEVKGKGDILVKTKRG-AKRITDVYYVSGLKHNLLSVGQLLLRGHE 322
           ESH+  VK GD+K ++V+GKG   V    G  K + +VY++  L  NLLSVGQL++ G+ 
Sbjct: 327 ESHKLKVKLGDDKQVQVEGKGTXAVNNGHGNVKLLYNVYFIPSLTQNLLSVGQLMVSGYS 386

Query: 323 VIFKDNICEIRTKNGDLI 328
           ++F    C I+ K  D I
Sbjct: 387 ILFDGATCVIKDKKSDQI 390

[Close]

BLAST of CSPI06G25930 vs. NCBI nr
Match: gi|47824985|gb|AAT38758.1| (Putative gag-pol polyprotein, identical [Solanum demissum])

HSP 1 Score: 235.3 bits (599), Expect = 1.7e-58
Identity = 131/331 (39.58%), Postives = 199/331 (60.12%), Query Frame = 1


Query: 17  PESENVSTAKAAWDALQNLYEGEEKVKLVRLQTLKAEFDTIRMKDSETIKEFFNRVLLIV 76
           P    V T+K AW+ L+  Y G++KV  V+LQTL+ +F+T+ M ++E+++ + +R   IV
Sbjct: 78  PRISAVETSKQAWEILKQEYFGDDKVITVKLQTLRRDFETLFMNENESVQGYLSRTSAIV 137

Query: 77  NQLRSNGETIEDQRIVEKILRSMTRRYEHIVVAIEESKDLSTLSINSLMGSLQSHELRLK 136
           N++RS GE I++Q +V K+LRS+T ++EH+V AIEESKDLST S + LM SL +HE RL 
Sbjct: 138 NRMRSYGEKIDNQIVVSKVLRSLTTKFEHVVTAIEESKDLSTYSFDELMSSLLAHEDRLN 197

Query: 137 MFDSNPSEEAFHMQSSY-------------RGRSNGRRGGRGGRGNGRSNV--------- 196
                  E+AF ++  +              GR N R  GRGG G GR+ V         
Sbjct: 198 RSREKVQEKAFQVKGEFSYKGKAENSAGRGHGRGNFRGRGRGGSGRGRNQVGEFRQYKSN 257

Query: 197 --VTNTERYGHFQADCWSKKANSNQAETTLMHEQSNNDQGLLFLTLNVQQSSTKEIWYLD 256
                 +++GH + DCW+K+ +  +        Q+  ++  LF+  +    S   +W++D
Sbjct: 258 IQCRYCKKFGHKEVDCWTKQKDEQKDAN---FTQNVEEESKLFMASSQITESANAVWFID 317

Query: 257 SGCSNHMTGRKDIFISLDESHQNVVKTGDNKMLEVKGKGDILVKTKRG-AKRITDVYYVS 316
           SGCSNHM+  K +F  LDES ++ V+ GD+K + ++GKG + +KT +G  K + DV YV 
Sbjct: 318 SGCSNHMSSSKSLFRDLDESQKSEVRLGDDKQVHIEGKGTVEIKTVQGNVKFLYDVQYVP 377

Query: 317 GLKHNLLSVGQLLLRGHEVIFKDNICEIRTK 323
            L HNLLSVGQL+  G+ V+F DN C+I+ K
Sbjct: 378 TLAHNLLSVGQLMTSGYSVVFYDNACDIKDK 405

The following BLAST results are available for this feature:

BLAST of CSPI06G25930 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G25930 vs. TrEMBL


Match Name	E-value	Identity	Description
A6YTD9_CUCME	6.7e-75	48.20	Integrase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A068B703_GOSBA	1.7e-62	39.24	Polyprotein OS=Gossypium barbadense PE=4 SV=1	[more]
A5AWP3_VITVI	6.5e-62	43.40	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020777 PE=4 SV=1	[more]
Q6L3N8_SOLDE	1.2e-58	39.58	Putative gag-pol polyprotein, identical OS=Solanum demissum GN=SDM1_42t00010 PE=...	[more]
A0A151RW17_CAJCA	2.6e-58	39.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CSPI06G25930 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20980.1	1.3e-08	41.11	Gag-Pol-related retrotransposon family protein	[more]
AT3G21000.1	2.8e-08	21.89	Gag-Pol-related retrotransposon family protein	[more]

BLAST of CSPI06G25930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099180\|ref\|XP_008450471.1\|	7.3e-99	56.57	PREDICTED: uncharacterized protein LOC103492064 [Cucumis melo]	[more]
gi\|150036244\|gb\|ABR67407.1\|	9.6e-75	48.20	integrase [Cucumis melo subsp. melo]	[more]
gi\|651219311\|gb\|AIC77183.1\|	2.5e-62	39.24	polyprotein [Gossypium barbadense]	[more]
gi\|147789988\|emb\|CAN71759.1\|	9.3e-62	43.40	hypothetical protein VITISV_020777 [Vitis vinifera]	[more]
gi\|47824985\|gb\|AAT38758.1\|	1.7e-58	39.58	Putative gag-pol polyprotein, identical [Solanum demissum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G25930.1	CSPI06G25930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 24..329 score: 1.2
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 24..329 score: 1.2
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 21..136 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G25930	Cucurbita pepo (Zucchini)	cpecpiB081
CSPI06G25930	Cucurbita pepo (Zucchini)	cpecpiB503
CSPI06G25930	Melon (DHL92) v3.6.1	cpimedB494
CSPI06G25930	Melon (DHL92) v3.6.1	cpimedB497
CSPI06G25930	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G25930	Cucumber (Gy14) v2	cgybcpiB294
CSPI06G25930	Silver-seed gourd	carcpiB0271
CSPI06G25930	Silver-seed gourd	carcpiB0847
CSPI06G25930	Cucumber (Chinese Long) v3	cpicucB371
CSPI06G25930	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G25930	Cucumber (Chinese Long) v3	cpicucB374
CSPI06G25930	Watermelon (97103) v2	cpiwmbB438
CSPI06G25930	Watermelon (97103) v2	cpiwmbB433
CSPI06G25930	Watermelon (97103) v2	cpiwmbB434
CSPI06G25930	Wax gourd	cpiwgoB629
CSPI06G25930	Cucumber (Gy14) v1	cgycpiB085
CSPI06G25930	Cucurbita maxima (Rimu)	cmacpiB689
CSPI06G25930	Cucurbita moschata (Rifu)	cmocpiB681
CSPI06G25930	Cucurbita moschata (Rifu)	cmocpiB874
CSPI06G25930	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G25930	Melon (DHL92) v3.5.1	cpimeB509
CSPI06G25930	Melon (DHL92) v3.5.1	cpimeB513
CSPI06G25930	Watermelon (Charleston Gray)	cpiwcgB453
CSPI06G25930	Watermelon (Charleston Gray)	cpiwcgB454
CSPI06G25930	Watermelon (97103) v1	cpiwmB520
CSPI06G25930	Watermelon (97103) v1	cpiwmB521