CSPI06G25920 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G25920
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr6 : 22959593 .. 22960708 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAAAATGAAAGTAACTTGAAATTGAAATCATTGCGTTCGGATCGTGAAGGAGAATATATTGTTTTTGCAGATTTCTTGAAGGAAAATGGAATCAAGCACCAGAAGACTGTTCAAAGAACTCCTCAACAAAACGGAATTGCAGAGAGGAAAAATAGAATAATAGTGGAACTTGCAAGAAGTATGTTGAAGGCAAAGAAACTTCCTGATCAATTTTGGGGAGACGCAGTAACTTGTGCTGTTTATCTCCTAAATAGAGCTTCAACGAAAAGTGTGCAAGGTATTACTCCTCAAGAAGCATGGAGCGGATTGAAACCAACCGTTAGTCACCTAAGAGTGTTTGGGTGCATTGCTTACTCTCACATTTCAGATGAGAAAAGAGGTAAGCTAGATGATAAATCAGAAAAATGCATTTTTGTTCGGCACAATGAGAACTCCAAGGCCTACAGACTATACAACCCGATAAGTAAGAAAGTTGTTATTAGTCGAGATGTCAAGTTCGATGAAGCAAAATTGTGGCAATGGAATGCACCAAATGAAGACCAAAATCCATTACATGTTGATATGGATGGAAAAAAAGATGCTCGAGACTTGGAGCTTGAAGTAACTCAACCACTGACTTTACCTACTTCATCACACTCCACAAGTGATAAAGAAACTACTTCAAGGAAGACCAGAAATATTCAAGAGATCTATAATACTTCAAGAAGGATACTAGATGAAGAACATGTTGATTTTGCTTTATTTGCAAATGTTGATCCTGTAAACTTTGAAGAAGCAATTCAAGATGAAAATTGGAAAGATGCAATGAATCAAGAGATTGATGCAATAAGAAGAAACGAGACATGGGAGTTAGTAAAATTACCAGAAAATAAAAGGGCTCTTGGAGTCGAATGGATCTATAAAACAAATCTAAAGCAAAATGGAGAAGTGCAAAAATACAAAGCCAGATTCGTTGTAAAAGGTTACAAACAAAAGTTTGGTGTGGATTATGAAGAAGTTTTTGCACCGGTAACTCGCTTGGAGACTGTTCGTTTGTTGTTAGCCCTTGCAGCAAAAAATGAATGGAAAGTTCATCAAATGGATGTAAAGTCAGCATTCCTGTTCTCTTAG

mRNA sequence

ATGGTGGAAAATGAAAGTAACTTGAAATTGAAATCATTGCGTTCGGATCGTGAAGGAGAATATATTGTTTTTGCAGATTTCTTGAAGGAAAATGGAATCAAGCACCAGAAGACTGTTCAAAGAACTCCTCAACAAAACGGAATTGCAGAGAGGAAAAATAGAATAATAGTGGAACTTGCAAGAAGTATGTTGAAGGCAAAGAAACTTCCTGATCAATTTTGGGGAGACGCAGTAACTTGTGCTGTTTATCTCCTAAATAGAGCTTCAACGAAAAGTGTGCAAGGTATTACTCCTCAAGAAGCATGGAGCGGATTGAAACCAACCGTTAGTCACCTAAGAGTGTTTGGGTGCATTGCTTACTCTCACATTTCAGATGAGAAAAGAGGTAAGCTAGATGATAAATCAGAAAAATGCATTTTTGTTCGGCACAATGAGAACTCCAAGGCCTACAGACTATACAACCCGATAAGTAAGAAAGTTGTTATTAGTCGAGATGTCAAGTTCGATGAAGCAAAATTGTGGCAATGGAATGCACCAAATGAAGACCAAAATCCATTACATGTTGATATGGATGGAAAAAAAGATGCTCGAGACTTGGAGCTTGAAGTAACTCAACCACTGACTTTACCTACTTCATCACACTCCACAAGTGATAAAGAAACTACTTCAAGGAAGACCAGAAATATTCAAGAGATCTATAATACTTCAAGAAGGATACTAGATGAAGAACATGTTGATTTTGCTTTATTTGCAAATGTTGATCCTGTAAACTTTGAAGAAGCAATTCAAGATGAAAATTGGAAAGATGCAATGAATCAAGAGATTGATGCAATAAGAAGAAACGAGACATGGGAGTTAGTAAAATTACCAGAAAATAAAAGGGCTCTTGGAGTCGAATGGATCTATAAAACAAATCTAAAGCAAAATGGAGAAGTGCAAAAATACAAAGCCAGATTCGTTGTAAAAGGTTACAAACAAAAGTTTGGTGTGGATTATGAAGAAGTTTTTGCACCGGTAACTCGCTTGGAGACTGTTCGTTTGTTGTTAGCCCTTGCAGCAAAAAATGAATGGAAAGTTCATCAAATGGATGTAAAGTCAGCATTCCTGTTCTCTTAG

Coding sequence (CDS)

ATGGTGGAAAATGAAAGTAACTTGAAATTGAAATCATTGCGTTCGGATCGTGAAGGAGAATATATTGTTTTTGCAGATTTCTTGAAGGAAAATGGAATCAAGCACCAGAAGACTGTTCAAAGAACTCCTCAACAAAACGGAATTGCAGAGAGGAAAAATAGAATAATAGTGGAACTTGCAAGAAGTATGTTGAAGGCAAAGAAACTTCCTGATCAATTTTGGGGAGACGCAGTAACTTGTGCTGTTTATCTCCTAAATAGAGCTTCAACGAAAAGTGTGCAAGGTATTACTCCTCAAGAAGCATGGAGCGGATTGAAACCAACCGTTAGTCACCTAAGAGTGTTTGGGTGCATTGCTTACTCTCACATTTCAGATGAGAAAAGAGGTAAGCTAGATGATAAATCAGAAAAATGCATTTTTGTTCGGCACAATGAGAACTCCAAGGCCTACAGACTATACAACCCGATAAGTAAGAAAGTTGTTATTAGTCGAGATGTCAAGTTCGATGAAGCAAAATTGTGGCAATGGAATGCACCAAATGAAGACCAAAATCCATTACATGTTGATATGGATGGAAAAAAAGATGCTCGAGACTTGGAGCTTGAAGTAACTCAACCACTGACTTTACCTACTTCATCACACTCCACAAGTGATAAAGAAACTACTTCAAGGAAGACCAGAAATATTCAAGAGATCTATAATACTTCAAGAAGGATACTAGATGAAGAACATGTTGATTTTGCTTTATTTGCAAATGTTGATCCTGTAAACTTTGAAGAAGCAATTCAAGATGAAAATTGGAAAGATGCAATGAATCAAGAGATTGATGCAATAAGAAGAAACGAGACATGGGAGTTAGTAAAATTACCAGAAAATAAAAGGGCTCTTGGAGTCGAATGGATCTATAAAACAAATCTAAAGCAAAATGGAGAAGTGCAAAAATACAAAGCCAGATTCGTTGTAAAAGGTTACAAACAAAAGTTTGGTGTGGATTATGAAGAAGTTTTTGCACCGGTAACTCGCTTGGAGACTGTTCGTTTGTTGTTAGCCCTTGCAGCAAAAAATGAATGGAAAGTTCATCAAATGGATGTAAAGTCAGCATTCCTGTTCTCTTAG
Homology
[Close]
BLAST of CSPI06G25920 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 3.7e-66
Identity = 148/399 (37.09%), Postives = 233/399 (58.40%), Query Frame = 1 

Query: 1   MVENESNLKLKSLRSDREGEYIV--FADFLKENGIKHQKTVQRTPQQNGIAERKNRIIVE 60
           +VE E+  KLK LRSD  GEY    F ++   +GI+H+KTV  TPQ NG+AER NR IVE
Sbjct: 535 LVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVE 594

Query: 61  LARSMLKAKKLPDQFWGDAVTCAVYLLNRASTKSVQGITPQEAWSGLKPTVSHLRVFGCI 120
             RSML+  KLP  FWG+AV  A YL+NR+ +  +    P+  W+  + + SHL+VFGC 
Sbjct: 595 KVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCR 654

Query: 121 AYSHISDEKRGKLDDKSEKCIFVRHNENSKAYRLYNPISKKVVISRDVKFDEAKLWQW-- 180
           A++H+  E+R KLDDKS  CIF+ + +    YRL++P+ KKV+ SRDV F E+++     
Sbjct: 655 AFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAAD 714

Query: 181 --------------NAPNEDQNPL-------HVDMDGKKDARDLELEVTQPLTLPTSSHS 240
                           P+   NP         V   G++    +E        +    H 
Sbjct: 715 MSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHP 774

Query: 241 TSDKETTSRKTRNIQEIYNTSRRILDEEHVDFALFANVDPVNFEEAI---QDENWKDAMN 300
           T  +E   +  R  +     SRR    E+V   +  + +P + +E +   +      AM 
Sbjct: 775 TQGEEQ-HQPLRRSERPRVESRRYPSTEYV--LISDDREPESLKEVLSHPEKNQLMKAMQ 834

Query: 301 QEIDAIRRNETWELVKLPENKRALGVEWIYKTNLKQNGEVQ--KYKARFVVKGYKQKFGV 360
           +E++++++N T++LV+LP+ KR L  +W++K  LK++G+ +  +YKAR VVKG++QK G+
Sbjct: 835 EEMESLQKNGTYKLVELPKGKRPLKCKWVFK--LKKDGDCKLVRYKARLVVKGFEQKKGI 894

Query: 361 DYEEVFAPVTRLETVRLLLALAAKNEWKVHQMDVKSAFL 370
           D++E+F+PV ++ ++R +L+LAA  + +V Q+DVK+AFL
Sbjct: 895 DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFL 928

[Close]
BLAST of CSPI06G25920 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 131.0 bits (328), Expect = 2.8e-29
Identity = 72/175 (41.14%), Postives = 101/175 (57.71%), Query Frame = 1 

Query: 3   ENESNLKLKSLRSDREGEYIV--FADFLKENGIKHQKTVQRTPQQNGIAERKNRIIVELA 62
           E   NLK+  L  D   EY+      F  + GI +  TV  TPQ NG++ER  R I E A
Sbjct: 537 EAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKA 596

Query: 63  RSMLKAKKLPDQFWGDAVTCAVYLLNRASTKSV--QGITPQEAWSGLKPTVSHLRVFGCI 122
           R+M+   KL   FWG+AV  A YL+NR  ++++     TP E W   KP + HLRVFG  
Sbjct: 597 RTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGAT 656

Query: 123 AYSHISDEKRGKLDDKSEKCIFVRHNENSKAYRLYNPISKKVVISRDVKFDEAKL 174
            Y HI + K+GK DDKS K IFV +  N   ++L++ +++K +++RDV  DE  +
Sbjct: 657 VYVHIKN-KQGKFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARDVVVDETNM 708

[Close]
BLAST of CSPI06G25920 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-16
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 1 

Query: 254 DPVNFEEAIQDENWKDAMNQEIDAIRRNETWELVKLPENKRALGVEWIYKTNLKQNGEVQ 313
           +P +   A++D  W  AM +E+DA+ RN+TW LV  P N+  LG +W++KT L  +G + 
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 314 KYKARFVVKGYKQKFGVDYEEVFAPVTRLETVRLLLALAAKNE 357
           + KAR V KG+ Q+ G+ + E ++PV R  T+R +L +A + E
Sbjct: 87  RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLE 129

[Close]
BLAST of CSPI06G25920 vs. Swiss-Prot
Match: M710_ARATH (Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana GN=AtMg00710 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-10
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1 

Query: 53  NRIIVELARSMLKAKKLPDQFWGDAVTCAVYLLNRASTKSVQGITPQEAWSGLKPTVSHL 112
           NR I+E  RSML    LP  F  DA   AV+++N+  + ++    P E W    PT S+L
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 113 RVFGCIAYSHISDEKRGKLDDKSEK 138
           R FGC+AY H  +   GKL  +++K
Sbjct: 62  RRFGCVAYIHCDE---GKLKPRAKK 83

[Close]
BLAST of CSPI06G25920 vs. TrEMBL
Match: A6YTD9_CUCME (Integrase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 3.5e-132
Identity = 236/370 (63.78%), Postives = 296/370 (80.00%), Query Frame = 1 

Query: 3   ENESNLKLKSLRSDREGEYIVFADFLKENGIKHQKTVQRTPQQNGIAERKNRIIVELARS 62
           EN+S  K+K+LRSDR GEYIVF +F KE GI HQ T + T QQNG+AERKNR I+E+ARS
Sbjct: 545 ENQSGYKIKTLRSDRGGEYIVFGNFFKEQGIHHQMTARMTTQQNGVAERKNRTIMEMARS 604

Query: 63  MLKAKKLPDQFWGDAVTCAVYLLNRASTKSVQGITPQEAWSGLKPTVSHLRVFGCIAYSH 122
           MLKAK LP++FWGDAV C VY+LNRA TKSV G+TP EAW   KP+VSHL+VF  IAYSH
Sbjct: 605 MLKAKNLPNEFWGDAVACTVYILNRAPTKSVPGMTPYEAWCDEKPSVSHLKVFRSIAYSH 664

Query: 123 ISDEKRGKLDDKSEKCIFVRHNENSKAYRLYNPISKKVVISRDVKFDEAKLWQWNAP-NE 182
           I ++ RGKLDDKSEKCI V +NENSKAYRLYNP+S+K++I+RDV F E + W WN   +E
Sbjct: 665 IPNQLRGKLDDKSEKCIMVGYNENSKAYRLYNPVSRKIIINRDVIFSEDESWNWNDDVDE 724

Query: 183 DQNPLHVDMDGKKDARDLELEVTQPLTLPTS--SHSTSDKETTSRKTRNIQEIYNTSRRI 242
            ++P HV+++  + A++LE    Q +   +S  S STS+ E + R+ R+IQEIYN + RI
Sbjct: 725 AKSPFHVNINENEVAQELEQAKIQAVESSSSSTSSSTSNDEISPRRMRSIQEIYNNTNRI 784

Query: 243 LDEEHVDFALFANVDPVNFEEAIQDENWKDAMNQEIDAIRRNETWELVKLPENKRALGVE 302
             +   +FALFA V PV F+EAIQDE WK AM+QEIDAIRRNETWEL++LP NK+ALGV+
Sbjct: 785 NVDHFANFALFAGVGPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELMELPTNKQALGVK 844

Query: 303 WIYKTNLKQNGEVQKYKARFVVKGYKQKFGVDYEEVFAPVTRLETVRLLLALAAKNEWKV 362
           W+Y+T LK +G V+ YKAR VVKGYKQ++GVDYEE+FAPVTR+ET+RL+L+LAA+N WKV
Sbjct: 845 WVYRTKLKSDGNVEIYKARLVVKGYKQEYGVDYEEIFAPVTRIETIRLILSLAAQNGWKV 904

Query: 363 HQMDVKSAFL 370
           HQMD+KSAFL
Sbjct: 905 HQMDIKSAFL 914

[Close]
BLAST of CSPI06G25920 vs. TrEMBL
Match: Q9M197_ARATH (Copia-type reverse transcriptase-like protein OS=Arabidopsis thaliana GN=T16L24.270 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 1.2e-111
Identity = 204/374 (54.55%), Postives = 275/374 (73.53%), Query Frame = 1 

Query: 2   VENESNLKLKSLRSDREGEYIV--FADFLKENGIKHQKTVQRTPQQNGIAERKNRIIVEL 61
           VE ES L +K++RSD  GE+    F  + ++NGI+ Q TV R+PQQNG+AERKNR I+E+
Sbjct: 582 VEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEM 641

Query: 62  ARSMLKAKKLPDQFWGDAVTCAVYLLNRASTKSVQGITPQEAWSGLKPTVSHLRVFGCIA 121
           ARSMLK+K+LP + W +AV CAVYLLNR+ TKSV G TPQEAWSG KP VSHLRVFG IA
Sbjct: 642 ARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIA 701

Query: 122 YSHISDEKRGKLDDKSEKCIFVRHNENSKAYRLYNPISKKVVISRDVKFDEAKLWQWNAP 181
           ++H+ DEKR KLDDKSEK IF+ ++ NSK Y+LYNP +KK +ISR++ FDE   W WN+ 
Sbjct: 702 HAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSN 761

Query: 182 NEDQNPL-HVDMDGKKDARDLELEVTQPLTLPTSSHSTSDKETTSRKT---RNIQEIYNT 241
            ED N   H + D  +  R+ E    +P T PTS  S+  +E++S +T   R+IQE+Y  
Sbjct: 762 EEDYNFFPHFEEDKPEPTRE-EPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEV 821

Query: 242 SRRILDEEHVDFALFANVDPVNFEEAIQDENWKDAMNQEIDAIRRNETWELVKLPENKRA 301
           +     E    F LFA  +P++F+EAI+ + W++AM++EI +I++N+TWEL  LP   +A
Sbjct: 822 TEN--QENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKA 881

Query: 302 LGVEWIYKTNLKQNGEVQKYKARFVVKGYKQKFGVDYEEVFAPVTRLETVRLLLALAAKN 361
           +GV+W+YK      GEV++YKAR V KGY Q+ G+DY+E+FAPV RLETVRL+++LAA+N
Sbjct: 882 IGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQN 941

Query: 362 EWKVHQMDVKSAFL 370
           +WK+HQMDVKSAFL
Sbjct: 942 KWKIHQMDVKSAFL 952

[Close]
BLAST of CSPI06G25920 vs. TrEMBL
Match: V9H0W6_ARATH (Lectin receptor kinase (Fragment) OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 1.2e-111
Identity = 204/374 (54.55%), Postives = 275/374 (73.53%), Query Frame = 1 

Query: 2   VENESNLKLKSLRSDREGEYIV--FADFLKENGIKHQKTVQRTPQQNGIAERKNRIIVEL 61
           VE ES L +K++RSD  GE+    F  + ++NGI+ Q TV R+PQQNG+AERKNR I+E+
Sbjct: 79  VEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEM 138

Query: 62  ARSMLKAKKLPDQFWGDAVTCAVYLLNRASTKSVQGITPQEAWSGLKPTVSHLRVFGCIA 121
           ARSMLK+K+LP + W +AV CAVYLLNR+ TKSV G TPQEAWSG KP VSHLRVFG IA
Sbjct: 139 ARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIA 198

Query: 122 YSHISDEKRGKLDDKSEKCIFVRHNENSKAYRLYNPISKKVVISRDVKFDEAKLWQWNAP 181
           ++H+ DEKR KLDDKSEK IF+ ++ NSK Y+LYNP +KK +ISR++ FDE   W WN+ 
Sbjct: 199 HAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSN 258

Query: 182 NEDQNPL-HVDMDGKKDARDLELEVTQPLTLPTSSHSTSDKETTSRKT---RNIQEIYNT 241
            ED N   H + D  +  R+ E    +P T PTS  S+  +E++S +T   R+IQE+Y  
Sbjct: 259 EEDYNFFPHFEEDKPEPTRE-EPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEV 318

Query: 242 SRRILDEEHVDFALFANVDPVNFEEAIQDENWKDAMNQEIDAIRRNETWELVKLPENKRA 301
           +     E    F LFA  +P++F+EAI+ + W++AM++EI +I++N+TWEL  LP   +A
Sbjct: 319 TEN--QENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKA 378

Query: 302 LGVEWIYKTNLKQNGEVQKYKARFVVKGYKQKFGVDYEEVFAPVTRLETVRLLLALAAKN 361
           +GV+W+YK      GEV++YKAR V KGY Q+ G+DY+E+FAPV RLETVRL+++LAA+N
Sbjct: 379 IGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQN 438

Query: 362 EWKVHQMDVKSAFL 370
           +WK+HQMDVKSAFL
Sbjct: 439 KWKIHQMDVKSAFL 449

[Close]
BLAST of CSPI06G25920 vs. TrEMBL
Match: Q9SXB2_ARATH (T28P6.8 protein OS=Arabidopsis thaliana GN=T28P6.8 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 1.2e-111
Identity = 204/374 (54.55%), Postives = 275/374 (73.53%), Query Frame = 1 

Query: 2   VENESNLKLKSLRSDREGEYIV--FADFLKENGIKHQKTVQRTPQQNGIAERKNRIIVEL 61
           VE ES L +K++RSDR GE+    F  + ++NGI+ Q TV R+PQQNG+ ERKNR I+E+
Sbjct: 582 VEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEM 641

Query: 62  ARSMLKAKKLPDQFWGDAVTCAVYLLNRASTKSVQGITPQEAWSGLKPTVSHLRVFGCIA 121
           ARSMLK+K+LP + W +AV CAVYLLNR+ TKSV G TPQEAWSG KP VSHLRVFG IA
Sbjct: 642 ARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIA 701

Query: 122 YSHISDEKRGKLDDKSEKCIFVRHNENSKAYRLYNPISKKVVISRDVKFDEAKLWQWNAP 181
           ++H+ DEKR KLDDKSEK IF+ ++ NSK Y+LYNP +KK +ISR++ FDE   W WN+ 
Sbjct: 702 HAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSN 761

Query: 182 NEDQNPL-HVDMDGKKDARDLELEVTQPLTLPTSSHSTSDKETTSRKT---RNIQEIYNT 241
            ED N   H + D  +  R+ E    +P T PTS  S+  +E++S +T   R+IQE+Y  
Sbjct: 762 EEDYNFFPHFEEDEPEPTRE-EPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEV 821

Query: 242 SRRILDEEHVDFALFANVDPVNFEEAIQDENWKDAMNQEIDAIRRNETWELVKLPENKRA 301
           +     E    F LFA  +P++F++AI+ + W++AM++EI +I++N+TWEL  LP   +A
Sbjct: 822 TEN--QENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKA 881

Query: 302 LGVEWIYKTNLKQNGEVQKYKARFVVKGYKQKFGVDYEEVFAPVTRLETVRLLLALAAKN 361
           +GV+W+YK      GEV++YKAR V KGY Q+ G+DY+EVFAPV RLETVRL+++LAA+N
Sbjct: 882 IGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQN 941

Query: 362 EWKVHQMDVKSAFL 370
           +WK+HQMDVKSAFL
Sbjct: 942 KWKIHQMDVKSAFL 952

[Close]
BLAST of CSPI06G25920 vs. TrEMBL
Match: Q9M2D1_ARATH (Copia-type polyprotein OS=Arabidopsis thaliana GN=T20K12.230 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 1.2e-111
Identity = 204/374 (54.55%), Postives = 275/374 (73.53%), Query Frame = 1 

Query: 2   VENESNLKLKSLRSDREGEYIV--FADFLKENGIKHQKTVQRTPQQNGIAERKNRIIVEL 61
           VE ES L +K++RSDR GE+    F  + ++NGI+ Q TV R+PQQNG+ ERKNR I+E+
Sbjct: 582 VEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEM 641

Query: 62  ARSMLKAKKLPDQFWGDAVTCAVYLLNRASTKSVQGITPQEAWSGLKPTVSHLRVFGCIA 121
           ARSMLK+K+LP + W +AV CAVYLLNR+ TKSV G TPQEAWSG KP VSHLRVFG IA
Sbjct: 642 ARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIA 701

Query: 122 YSHISDEKRGKLDDKSEKCIFVRHNENSKAYRLYNPISKKVVISRDVKFDEAKLWQWNAP 181
           ++H+ DEKR KLDDKSEK IF+ ++ NSK Y+LYNP +KK +ISR++ FDE   W WN+ 
Sbjct: 702 HAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSN 761

Query: 182 NEDQNPL-HVDMDGKKDARDLELEVTQPLTLPTSSHSTSDKETTSRKT---RNIQEIYNT 241
            ED N   H + D  +  R+ E    +P T PTS  S+  +E++S +T   R+IQE+Y  
Sbjct: 762 EEDYNFFPHFEEDEPEPTRE-EPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEV 821

Query: 242 SRRILDEEHVDFALFANVDPVNFEEAIQDENWKDAMNQEIDAIRRNETWELVKLPENKRA 301
           +     E    F LFA  +P++F++AI+ + W++AM++EI +I++N+TWEL  LP   +A
Sbjct: 822 TEN--QENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKA 881

Query: 302 LGVEWIYKTNLKQNGEVQKYKARFVVKGYKQKFGVDYEEVFAPVTRLETVRLLLALAAKN 361
           +GV+W+YK      GEV++YKAR V KGY Q+ G+DY+EVFAPV RLETVRL+++LAA+N
Sbjct: 882 IGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQN 941

Query: 362 EWKVHQMDVKSAFL 370
           +WK+HQMDVKSAFL
Sbjct: 942 KWKIHQMDVKSAFL 952

[Close]
BLAST of CSPI06G25920 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 109.0 bits (271), Expect = 6.4e-24
Identity = 48/116 (41.38%), Postives = 77/116 (66.38%), Query Frame = 1 

Query: 254 DPVNFEEAIQDENWKDAMNQEIDAIRRNETWELVKLPENKRALGVEWIYKTNLKQNGEVQ 313
           +P  + EA +   W  AM+ EI A+    TWE+  LP NK+ +G +W+YK     +G ++
Sbjct: 85  EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144

Query: 314 KYKARFVVKGYKQKFGVDYEEVFAPVTRLETVRLLLALAAKNEWKVHQMDVKSAFL 370
           +YKAR V KGY Q+ G+D+ E F+PV +L +V+L+LA++A   + +HQ+D+ +AFL
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 200

[Close]
BLAST of CSPI06G25920 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 88.6 bits (218), Expect = 8.9e-18
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 1 

Query: 254 DPVNFEEAIQDENWKDAMNQEIDAIRRNETWELVKLPENKRALGVEWIYKTNLKQNGEVQ 313
           +P +   A++D  W  AM +E+DA+ RN+TW LV  P N+  LG +W++KT L  +G + 
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 314 KYKARFVVKGYKQKFGVDYEEVFAPVTRLETVRLLLALAAKNE 357
           + KAR V KG+ Q+ G+ + E ++PV R  T+R +L +A + E
Sbjct: 87  RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLE 129

[Close]
BLAST of CSPI06G25920 vs. TAIR10
Match: ATMG00710.1 (ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-11
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1 

Query: 53  NRIIVELARSMLKAKKLPDQFWGDAVTCAVYLLNRASTKSVQGITPQEAWSGLKPTVSHL 112
           NR I+E  RSML    LP  F  DA   AV+++N+  + ++    P E W    PT S+L
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 113 RVFGCIAYSHISDEKRGKLDDKSEK 138
           R FGC+AY H  +   GKL  +++K
Sbjct: 62  RRFGCVAYIHCDE---GKLKPRAKK 83

[Close]
BLAST of CSPI06G25920 vs. NCBI nr
Match: gi|150036244|gb|ABR67407.1| (integrase [Cucumis melo subsp. melo])

HSP 1 Score: 479.6 bits (1233), Expect = 5.1e-132
Identity = 236/370 (63.78%), Postives = 296/370 (80.00%), Query Frame = 1 

Query: 3   ENESNLKLKSLRSDREGEYIVFADFLKENGIKHQKTVQRTPQQNGIAERKNRIIVELARS 62
           EN+S  K+K+LRSDR GEYIVF +F KE GI HQ T + T QQNG+AERKNR I+E+ARS
Sbjct: 545 ENQSGYKIKTLRSDRGGEYIVFGNFFKEQGIHHQMTARMTTQQNGVAERKNRTIMEMARS 604

Query: 63  MLKAKKLPDQFWGDAVTCAVYLLNRASTKSVQGITPQEAWSGLKPTVSHLRVFGCIAYSH 122
           MLKAK LP++FWGDAV C VY+LNRA TKSV G+TP EAW   KP+VSHL+VF  IAYSH
Sbjct: 605 MLKAKNLPNEFWGDAVACTVYILNRAPTKSVPGMTPYEAWCDEKPSVSHLKVFRSIAYSH 664

Query: 123 ISDEKRGKLDDKSEKCIFVRHNENSKAYRLYNPISKKVVISRDVKFDEAKLWQWNAP-NE 182
           I ++ RGKLDDKSEKCI V +NENSKAYRLYNP+S+K++I+RDV F E + W WN   +E
Sbjct: 665 IPNQLRGKLDDKSEKCIMVGYNENSKAYRLYNPVSRKIIINRDVIFSEDESWNWNDDVDE 724

Query: 183 DQNPLHVDMDGKKDARDLELEVTQPLTLPTS--SHSTSDKETTSRKTRNIQEIYNTSRRI 242
            ++P HV+++  + A++LE    Q +   +S  S STS+ E + R+ R+IQEIYN + RI
Sbjct: 725 AKSPFHVNINENEVAQELEQAKIQAVESSSSSTSSSTSNDEISPRRMRSIQEIYNNTNRI 784

Query: 243 LDEEHVDFALFANVDPVNFEEAIQDENWKDAMNQEIDAIRRNETWELVKLPENKRALGVE 302
             +   +FALFA V PV F+EAIQDE WK AM+QEIDAIRRNETWEL++LP NK+ALGV+
Sbjct: 785 NVDHFANFALFAGVGPVTFDEAIQDEKWKIAMDQEIDAIRRNETWELMELPTNKQALGVK 844

Query: 303 WIYKTNLKQNGEVQKYKARFVVKGYKQKFGVDYEEVFAPVTRLETVRLLLALAAKNEWKV 362
           W+Y+T LK +G V+ YKAR VVKGYKQ++GVDYEE+FAPVTR+ET+RL+L+LAA+N WKV
Sbjct: 845 WVYRTKLKSDGNVEIYKARLVVKGYKQEYGVDYEEIFAPVTRIETIRLILSLAAQNGWKV 904

Query: 363 HQMDVKSAFL 370
           HQMD+KSAFL
Sbjct: 905 HQMDIKSAFL 914

[Close]
BLAST of CSPI06G25920 vs. NCBI nr
Match: gi|1769898|emb|CAA69272.1| (lectin receptor kinase [Arabidopsis thaliana])

HSP 1 Score: 411.4 bits (1056), Expect = 1.7e-111
Identity = 204/374 (54.55%), Postives = 275/374 (73.53%), Query Frame = 1 

Query: 2   VENESNLKLKSLRSDREGEYIV--FADFLKENGIKHQKTVQRTPQQNGIAERKNRIIVEL 61
           VE ES L +K++RSD  GE+    F  + ++NGI+ Q TV R+PQQNG+AERKNR I+E+
Sbjct: 79  VEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEM 138

Query: 62  ARSMLKAKKLPDQFWGDAVTCAVYLLNRASTKSVQGITPQEAWSGLKPTVSHLRVFGCIA 121
           ARSMLK+K+LP + W +AV CAVYLLNR+ TKSV G TPQEAWSG KP VSHLRVFG IA
Sbjct: 139 ARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIA 198

Query: 122 YSHISDEKRGKLDDKSEKCIFVRHNENSKAYRLYNPISKKVVISRDVKFDEAKLWQWNAP 181
           ++H+ DEKR KLDDKSEK IF+ ++ NSK Y+LYNP +KK +ISR++ FDE   W WN+ 
Sbjct: 199 HAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSN 258

Query: 182 NEDQNPL-HVDMDGKKDARDLELEVTQPLTLPTSSHSTSDKETTSRKT---RNIQEIYNT 241
            ED N   H + D  +  R+ E    +P T PTS  S+  +E++S +T   R+IQE+Y  
Sbjct: 259 EEDYNFFPHFEEDKPEPTRE-EPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEV 318

Query: 242 SRRILDEEHVDFALFANVDPVNFEEAIQDENWKDAMNQEIDAIRRNETWELVKLPENKRA 301
           +     E    F LFA  +P++F+EAI+ + W++AM++EI +I++N+TWEL  LP   +A
Sbjct: 319 TEN--QENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKA 378

Query: 302 LGVEWIYKTNLKQNGEVQKYKARFVVKGYKQKFGVDYEEVFAPVTRLETVRLLLALAAKN 361
           +GV+W+YK      GEV++YKAR V KGY Q+ G+DY+E+FAPV RLETVRL+++LAA+N
Sbjct: 379 IGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQN 438

Query: 362 EWKVHQMDVKSAFL 370
           +WK+HQMDVKSAFL
Sbjct: 439 KWKIHQMDVKSAFL 449

[Close]
BLAST of CSPI06G25920 vs. NCBI nr
Match: gi|6850900|emb|CAB71063.1| (copia-type polyprotein [Arabidopsis thaliana])

HSP 1 Score: 411.4 bits (1056), Expect = 1.7e-111
Identity = 204/374 (54.55%), Postives = 275/374 (73.53%), Query Frame = 1 

Query: 2   VENESNLKLKSLRSDREGEYIV--FADFLKENGIKHQKTVQRTPQQNGIAERKNRIIVEL 61
           VE ES L +K++RSDR GE+    F  + ++NGI+ Q TV R+PQQNG+ ERKNR I+E+
Sbjct: 582 VEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEM 641

Query: 62  ARSMLKAKKLPDQFWGDAVTCAVYLLNRASTKSVQGITPQEAWSGLKPTVSHLRVFGCIA 121
           ARSMLK+K+LP + W +AV CAVYLLNR+ TKSV G TPQEAWSG KP VSHLRVFG IA
Sbjct: 642 ARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIA 701

Query: 122 YSHISDEKRGKLDDKSEKCIFVRHNENSKAYRLYNPISKKVVISRDVKFDEAKLWQWNAP 181
           ++H+ DEKR KLDDKSEK IF+ ++ NSK Y+LYNP +KK +ISR++ FDE   W WN+ 
Sbjct: 702 HAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSN 761

Query: 182 NEDQNPL-HVDMDGKKDARDLELEVTQPLTLPTSSHSTSDKETTSRKT---RNIQEIYNT 241
            ED N   H + D  +  R+ E    +P T PTS  S+  +E++S +T   R+IQE+Y  
Sbjct: 762 EEDYNFFPHFEEDEPEPTRE-EPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEV 821

Query: 242 SRRILDEEHVDFALFANVDPVNFEEAIQDENWKDAMNQEIDAIRRNETWELVKLPENKRA 301
           +     E    F LFA  +P++F++AI+ + W++AM++EI +I++N+TWEL  LP   +A
Sbjct: 822 TEN--QENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKA 881

Query: 302 LGVEWIYKTNLKQNGEVQKYKARFVVKGYKQKFGVDYEEVFAPVTRLETVRLLLALAAKN 361
           +GV+W+YK      GEV++YKAR V KGY Q+ G+DY+EVFAPV RLETVRL+++LAA+N
Sbjct: 882 IGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQN 941

Query: 362 EWKVHQMDVKSAFL 370
           +WK+HQMDVKSAFL
Sbjct: 942 KWKIHQMDVKSAFL 952

[Close]
BLAST of CSPI06G25920 vs. NCBI nr
Match: gi|5734736|gb|AAD50001.1|AC007259_14 (Hypothetical protein [Arabidopsis thaliana])

HSP 1 Score: 411.4 bits (1056), Expect = 1.7e-111
Identity = 204/374 (54.55%), Postives = 275/374 (73.53%), Query Frame = 1 

Query: 2   VENESNLKLKSLRSDREGEYIV--FADFLKENGIKHQKTVQRTPQQNGIAERKNRIIVEL 61
           VE ES L +K++RSDR GE+    F  + ++NGI+ Q TV R+PQQNG+ ERKNR I+E+
Sbjct: 582 VEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEM 641

Query: 62  ARSMLKAKKLPDQFWGDAVTCAVYLLNRASTKSVQGITPQEAWSGLKPTVSHLRVFGCIA 121
           ARSMLK+K+LP + W +AV CAVYLLNR+ TKSV G TPQEAWSG KP VSHLRVFG IA
Sbjct: 642 ARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIA 701

Query: 122 YSHISDEKRGKLDDKSEKCIFVRHNENSKAYRLYNPISKKVVISRDVKFDEAKLWQWNAP 181
           ++H+ DEKR KLDDKSEK IF+ ++ NSK Y+LYNP +KK +ISR++ FDE   W WN+ 
Sbjct: 702 HAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSN 761

Query: 182 NEDQNPL-HVDMDGKKDARDLELEVTQPLTLPTSSHSTSDKETTSRKT---RNIQEIYNT 241
            ED N   H + D  +  R+ E    +P T PTS  S+  +E++S +T   R+IQE+Y  
Sbjct: 762 EEDYNFFPHFEEDEPEPTRE-EPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEV 821

Query: 242 SRRILDEEHVDFALFANVDPVNFEEAIQDENWKDAMNQEIDAIRRNETWELVKLPENKRA 301
           +     E    F LFA  +P++F++AI+ + W++AM++EI +I++N+TWEL  LP   +A
Sbjct: 822 TEN--QENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKA 881

Query: 302 LGVEWIYKTNLKQNGEVQKYKARFVVKGYKQKFGVDYEEVFAPVTRLETVRLLLALAAKN 361
           +GV+W+YK      GEV++YKAR V KGY Q+ G+DY+EVFAPV RLETVRL+++LAA+N
Sbjct: 882 IGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQN 941

Query: 362 EWKVHQMDVKSAFL 370
           +WK+HQMDVKSAFL
Sbjct: 942 KWKIHQMDVKSAFL 952

[Close]
BLAST of CSPI06G25920 vs. NCBI nr
Match: gi|6996308|emb|CAB75469.1| (copia-type reverse transcriptase-like protein [Arabidopsis thaliana])

HSP 1 Score: 411.4 bits (1056), Expect = 1.7e-111
Identity = 204/374 (54.55%), Postives = 275/374 (73.53%), Query Frame = 1 

Query: 2   VENESNLKLKSLRSDREGEYIV--FADFLKENGIKHQKTVQRTPQQNGIAERKNRIIVEL 61
           VE ES L +K++RSD  GE+    F  + ++NGI+ Q TV R+PQQNG+AERKNR I+E+
Sbjct: 582 VEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEM 641

Query: 62  ARSMLKAKKLPDQFWGDAVTCAVYLLNRASTKSVQGITPQEAWSGLKPTVSHLRVFGCIA 121
           ARSMLK+K+LP + W +AV CAVYLLNR+ TKSV G TPQEAWSG KP VSHLRVFG IA
Sbjct: 642 ARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIA 701

Query: 122 YSHISDEKRGKLDDKSEKCIFVRHNENSKAYRLYNPISKKVVISRDVKFDEAKLWQWNAP 181
           ++H+ DEKR KLDDKSEK IF+ ++ NSK Y+LYNP +KK +ISR++ FDE   W WN+ 
Sbjct: 702 HAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSN 761

Query: 182 NEDQNPL-HVDMDGKKDARDLELEVTQPLTLPTSSHSTSDKETTSRKT---RNIQEIYNT 241
            ED N   H + D  +  R+ E    +P T PTS  S+  +E++S +T   R+IQE+Y  
Sbjct: 762 EEDYNFFPHFEEDKPEPTRE-EPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEV 821

Query: 242 SRRILDEEHVDFALFANVDPVNFEEAIQDENWKDAMNQEIDAIRRNETWELVKLPENKRA 301
           +     E    F LFA  +P++F+EAI+ + W++AM++EI +I++N+TWEL  LP   +A
Sbjct: 822 TEN--QENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKA 881

Query: 302 LGVEWIYKTNLKQNGEVQKYKARFVVKGYKQKFGVDYEEVFAPVTRLETVRLLLALAAKN 361
           +GV+W+YK      GEV++YKAR V KGY Q+ G+DY+E+FAPV RLETVRL+++LAA+N
Sbjct: 882 IGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQN 941

Query: 362 EWKVHQMDVKSAFL 370
           +WK+HQMDVKSAFL
Sbjct: 942 KWKIHQMDVKSAFL 952

The following BLAST results are available for this feature:
BLAST of CSPI06G25920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC3.7e-6637.09Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME2.8e-2941.14Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
M820_ARATH1.6e-1639.81Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0... [more]
M710_ARATH2.9e-1040.00Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana GN=AtMg0... [more]
BLAST of CSPI06G25920 vs. TrEMBL
Match NameE-valueIdentityDescription
A6YTD9_CUCME3.5e-13263.78Integrase OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Q9M197_ARATH1.2e-11154.55Copia-type reverse transcriptase-like protein OS=Arabidopsis thaliana GN=T16L24.... [more]
V9H0W6_ARATH1.2e-11154.55Lectin receptor kinase (Fragment) OS=Arabidopsis thaliana PE=4 SV=1[more]
Q9SXB2_ARATH1.2e-11154.55T28P6.8 protein OS=Arabidopsis thaliana GN=T28P6.8 PE=4 SV=1[more]
Q9M2D1_ARATH1.2e-11154.55Copia-type polyprotein OS=Arabidopsis thaliana GN=T20K12.230 PE=4 SV=1[more]
BLAST of CSPI06G25920 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.16.4e-2441.38 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00820.18.9e-1839.81ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)[more]
ATMG00710.11.6e-1140.00ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of CSPI06G25920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|150036244|gb|ABR67407.1|5.1e-13263.78integrase [Cucumis melo subsp. melo][more]
gi|1769898|emb|CAA69272.1|1.7e-11154.55lectin receptor kinase [Arabidopsis thaliana][more]
gi|6850900|emb|CAB71063.1|1.7e-11154.55copia-type polyprotein [Arabidopsis thaliana][more]
gi|5734736|gb|AAD50001.1|AC007259_141.7e-11154.55Hypothetical protein [Arabidopsis thaliana][more]
gi|6996308|emb|CAB75469.1|1.7e-11154.55copia-type reverse transcriptase-like protein [Arabidopsis thaliana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf
IPR013103RVT_2
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G25920.1CSPI06G25920.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 7..56
score: 2.
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 1..106
score: 16
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 10..109
score: 2.3
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 7..115
score: 5.18
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 281..370
score: 2.8
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 4..369
score: 1.9E
NoneNo IPR availablePANTHERPTHR11439:SF127SUBFAMILY NOT NAMEDcoord: 4..369
score: 1.9E