CSPI06G25890 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G25890
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Iron-sulfur binding oxidoreductase
Location	Chr6 : 22937154 .. 22937808 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATCCATAGAATTAAGCATATTAAAAATATCAATTTAAGATCATGTCGTCGGACTTTGGAGAACATGTAGGAGAACATGCAGGCAGGAAGTACCAGTTCCGCTCGGGAGGAGCTTTCAGATCCATTGATAACTGTGCAAAGGACAGAGTTGTAGTAGAAATTGCCACATGGTCGTTGACTGTGGTTTCGGAAAAGCTTCAGGTTGAGCTCAAGCTTAGAGCTGTGGTGGCTGCTGCTATTGCTTTGTTTACAAAGGGCAAACTCTATCGATTTAAAATTCAGGTTGATGCTAAAACCAATTGTGGTTCGAGTGTCCAAACATATGATGTTGAAGTTTGGATCCCTCTTGTTGGTAAATGGGAAGTTAGATCTCACAGGCTTTGCTCTTAACAACTTAACCATGAACACCATCACCCTATTTTGATTGACTTTGTAAGCAAGTTTATATAAATAAGTGTTTATAAGTATAAAAACAAAAAACAAAAAAAAAAATAATAAGTAAATAAAACAGAAGTGTTCGTAAACTATTTTAGAAAGTCAATCTAAACCGACACTAAATTCCATTACAACTGCTCTCTCATGTACTTAATCAGGTTAGATCTATCTATCCTTGCTTTTCTATATCGCAATCAATAAAATAGTTAACTACTTTTG

mRNA sequence

ATGTCGTCGGACTTTGGAGAACATGTAGGAGAACATGCAGGCAGGAAGTACCAGTTCCGCTCGGGAGGAGCTTTCAGATCCATTGATAACTGTGCAAAGGACAGAGTTGTAGTAGAAATTGCCACATGGTCGTTGACTGTGGTTTCGGAAAAGCTTCAGGTTGAGCTCAAGCTTAGAGCTGTGGTGGCTGCTGCTATTGCTTTGTTTACAAAGGGCAAACTCTATCGATTTAAAATTCAGGTTGATGCTAAAACCAATTGTGGTTCGAGTGTCCAAACATATGATGTTGAAGTTTGGATCCCTCTTGTTGGTAAATGGGAAGTTAGATCTCACAGGCTTTGCTCTTAA

Coding sequence (CDS)

ATGTCGTCGGACTTTGGAGAACATGTAGGAGAACATGCAGGCAGGAAGTACCAGTTCCGCTCGGGAGGAGCTTTCAGATCCATTGATAACTGTGCAAAGGACAGAGTTGTAGTAGAAATTGCCACATGGTCGTTGACTGTGGTTTCGGAAAAGCTTCAGGTTGAGCTCAAGCTTAGAGCTGTGGTGGCTGCTGCTATTGCTTTGTTTACAAAGGGCAAACTCTATCGATTTAAAATTCAGGTTGATGCTAAAACCAATTGTGGTTCGAGTGTCCAAACATATGATGTTGAAGTTTGGATCCCTCTTGTTGGTAAATGGGAAGTTAGATCTCACAGGCTTTGCTCTTAA

Homology

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BLAST of CSPI06G25890 vs. TrEMBL
Match: A0A0A0KKM6_CUCSA (Iron-sulfur binding oxidoreductase OS=Cucumis sativus GN=Csa_6G465000 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.4e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1


Query: 1   MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA 60
           MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA
Sbjct: 1   MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA 60

Query: 61  VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS 116
           VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS
Sbjct: 61  VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS 115

[Close]

BLAST of CSPI06G25890 vs. NCBI nr
Match: gi|700193102|gb|KGN48306.1| (Iron-sulfur binding oxidoreductase [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 2.0e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1


Query: 1   MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA 60
           MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA
Sbjct: 1   MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA 60

Query: 61  VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS 116
           VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS
Sbjct: 61  VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS 115

The following BLAST results are available for this feature:

BLAST of CSPI06G25890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G25890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKM6_CUCSA	1.4e-58	100.00	Iron-sulfur binding oxidoreductase OS=Cucumis sativus GN=Csa_6G465000 PE=4 SV=1	[more]

BLAST of CSPI06G25890 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G25890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193102\|gb\|KGN48306.1\|	2.0e-58	100.00	Iron-sulfur binding oxidoreductase [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G25890.1	CSPI06G25890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 23..100 score: 3.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G25890	Csa6G465000	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G25890	MELO3C024610	Melon (DHL92) v3.5.1	cpimeB509
CSPI06G25890	MELO3C024610.2	Melon (DHL92) v3.6.1	cpimedB494
CSPI06G25890	CsaV3_6G041360	Cucumber (Chinese Long) v3	cpicucB371
CSPI06G25890	CsaV3_7G013820	Cucumber (Chinese Long) v3	cpicucB374

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G25890	Watermelon (97103) v2	cpiwmbB438
CSPI06G25890	Watermelon (97103) v2	cpiwmbB433
CSPI06G25890	Cucumber (Gy14) v1	cgycpiB085
CSPI06G25890	Cucurbita maxima (Rimu)	cmacpiB689
CSPI06G25890	Cucurbita moschata (Rifu)	cmocpiB681
CSPI06G25890	Cucurbita moschata (Rifu)	cmocpiB874
CSPI06G25890	Melon (DHL92) v3.5.1	cpimeB513
CSPI06G25890	Watermelon (Charleston Gray)	cpiwcgB453
CSPI06G25890	Watermelon (97103) v1	cpiwmB521
CSPI06G25890	Cucurbita pepo (Zucchini)	cpecpiB081
CSPI06G25890	Cucurbita pepo (Zucchini)	cpecpiB503
CSPI06G25890	Melon (DHL92) v3.6.1	cpimedB497
CSPI06G25890	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G25890	Cucumber (Gy14) v2	cgybcpiB294
CSPI06G25890	Silver-seed gourd	carcpiB0271
CSPI06G25890	Silver-seed gourd	carcpiB0847
CSPI06G25890	Cucumber (Chinese Long) v3	cpicucB363