CSPI06G25010 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G25010
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionL-threonine dehydratase
LocationChr6 : 22304530 .. 22304772 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGCTAATCTTTCTAAAGAGGAGCTTAAAAATGGAGTTGTTTGTGCATCAACTGGTGGAGACCATGCACAAGCAGCCCTTGCTTTGGCTGCCAACAAAATAGGAATTACTGAGATCGCCATTGTTATGCCTTCTACAACCCCTTCAATAAAGGTGCAAACTCTTTTCTTCGTTTTAGCTAAAACCCTCCACTACTTGTTAGAAAGAGAAATGGTGTGGATAACACAAAAGTGTGGAGAG

mRNA sequence

ATGATGGCTAATCTTTCTAAAGAGGAGCTTAAAAATGGAGTTGTTTGTGCATCAACTGGTGGAGACCATGCACAAGCAGCCCTTGCTTTGGCTGCCAACAAAATAGGAATTACTGAGATCGCCATTGTTATGCCTTCTACAACCCCTTCAATAAAGGTGCAAACTCTTTTCTTCGTTTTAGCTAAAACCCTCCACTACTTGTTAGAAAGAGAAATGGTGTGGATAACACAAAAGTGTGGAGAG

Coding sequence (CDS)

ATGATGGCTAATCTTTCTAAAGAGGAGCTTAAAAATGGAGTTGTTTGTGCATCAACTGGTGGAGACCATGCACAAGCAGCCCTTGCTTTGGCTGCCAACAAAATAGGAATTACTGAGATCGCCATTGTTATGCCTTCTACAACCCCTTCAATAAAGGTGCAAACTCTTTTCTTCGTTTTAGCTAAAACCCTCCACTACTTGTTAGAAAGAGAAATGGTGTGGATAACACAAAAGTGTGGAGAG
Homology
[Close]
BLAST of CSPI06G25010 vs. TAIR10
Match: AT3G10050.1 (AT3G10050.1 L-O-methylthreonine resistant 1)

HSP 1 Score: 47.0 bits (110), Expect = 6.5e-06
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1 

Query: 1   MMANLSKEELKNGVVCASTGGDHAQAALALAANKIGITEIAIVMPSTTPSIKVQTL 57
           MM  L  ++L  GV+C S+ G+HAQ  +AL+A+K+G T + IVMP TTP IK Q +
Sbjct: 148 MMVKLPADQLAKGVIC-SSAGNHAQ-GVALSASKLGCTAV-IVMPVTTPEIKWQAV 200

The following BLAST results are available for this feature:
BLAST of CSPI06G25010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G25010 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI06G25010 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G10050.16.5e-0650.00 L-O-methylthreonine resistant 1[more]
BLAST of CSPI06G25010 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001926PLP-dep
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G25010.1CSPI06G25010.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzymePFAMPF00291PALPcoord: 6..55
score: 6.
IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzymeunknownSSF53686Tryptophan synthase beta subunit-like PLP-dependent enzymescoord: 4..56
score: 1.8
NoneNo IPR availableGENE3DG3DSA:3.40.50.1100coord: 1..56
score: 4.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G25010Lsi01G012720Bottle gourd (USVL1VR-Ls)cpilsiB440
CSPI06G25010Bhi03G001167Wax gourdcpiwgoB635
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G25010Wax gourdcpiwgoB532
CSPI06G25010Wax gourdcpiwgoB619
CSPI06G25010Wild cucumber (PI 183967)cpicpiB124
CSPI06G25010Wild cucumber (PI 183967)cpicpiB186
CSPI06G25010Cucumber (Gy14) v1cgycpiB168
CSPI06G25010Cucumber (Gy14) v1cgycpiB559
CSPI06G25010Cucumber (Gy14) v1cgycpiB571
CSPI06G25010Cucurbita maxima (Rimu)cmacpiB271
CSPI06G25010Cucurbita maxima (Rimu)cmacpiB689
CSPI06G25010Cucurbita maxima (Rimu)cmacpiB855
CSPI06G25010Cucurbita maxima (Rimu)cmacpiB894
CSPI06G25010Cucurbita moschata (Rifu)cmocpiB259
CSPI06G25010Cucurbita moschata (Rifu)cmocpiB681
CSPI06G25010Cucurbita moschata (Rifu)cmocpiB838
CSPI06G25010Cucurbita moschata (Rifu)cmocpiB874
CSPI06G25010Cucumber (Chinese Long) v2cpicuB282
CSPI06G25010Cucumber (Chinese Long) v2cpicuB313
CSPI06G25010Cucumber (Chinese Long) v2cpicuB315
CSPI06G25010Melon (DHL92) v3.5.1cpimeB426
CSPI06G25010Melon (DHL92) v3.5.1cpimeB485
CSPI06G25010Melon (DHL92) v3.5.1cpimeB513
CSPI06G25010Watermelon (Charleston Gray)cpiwcgB444
CSPI06G25010Watermelon (Charleston Gray)cpiwcgB463
CSPI06G25010Watermelon (Charleston Gray)cpiwcgB488
CSPI06G25010Watermelon (97103) v1cpiwmB467
CSPI06G25010Watermelon (97103) v1cpiwmB524
CSPI06G25010Watermelon (97103) v1cpiwmB534
CSPI06G25010Cucurbita pepo (Zucchini)cpecpiB081
CSPI06G25010Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G25010Cucurbita pepo (Zucchini)cpecpiB627
CSPI06G25010Cucurbita pepo (Zucchini)cpecpiB762
CSPI06G25010Cucurbita pepo (Zucchini)cpecpiB878
CSPI06G25010Bottle gourd (USVL1VR-Ls)cpilsiB423
CSPI06G25010Bottle gourd (USVL1VR-Ls)cpilsiB452
CSPI06G25010Melon (DHL92) v3.6.1cpimedB420
CSPI06G25010Melon (DHL92) v3.6.1cpimedB473
CSPI06G25010Melon (DHL92) v3.6.1cpimedB497
CSPI06G25010Cucumber (Gy14) v2cgybcpiB140
CSPI06G25010Cucumber (Gy14) v2cgybcpiB287
CSPI06G25010Cucumber (Gy14) v2cgybcpiB290
CSPI06G25010Silver-seed gourdcarcpiB0271
CSPI06G25010Silver-seed gourdcarcpiB0282
CSPI06G25010Cucumber (Chinese Long) v3cpicucB334
CSPI06G25010Cucumber (Chinese Long) v3cpicucB363
CSPI06G25010Cucumber (Chinese Long) v3cpicucB367
CSPI06G25010Watermelon (97103) v2cpiwmbB442
CSPI06G25010Watermelon (97103) v2cpiwmbB458
CSPI06G25010Watermelon (97103) v2cpiwmbB479