CSPI06G22080 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G22080
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Lipid transfer protein
Location	Chr6 : 20005654 .. 20006767 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGTTTGATTGGATATAAATAGCTGAAGAAGATGGATAGATATTATTATAGGTTATGAGTAATAAGAAGATCAGTATAGTTAATTATATAGATCAGAGAAATGGGATTAATTAAAGAGTCAATTATTTTGGTAACTGTTGTTGTTGTGGGTTTGAGCATGAGCCACAGCAGCTTGGGTCAGTCAGGTGGATGCACCACAGCCTTGATAACCTTATCTCCATGCTTGACTTACATCAATGCTGCTGCTGGAACCACCACCTCTAATACTCCCTCTTCCTCTTGCTGCTCTCGCCTTGCCACCGTCCTTCAATCGAAACCTCGATGCCTTTGCTCCGCTCTCAGTGGCGGGGGGGGCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTGGCGCCGCCGCTTCCCTCGGTGTCACCATTAACCAGACTCGTGCTCTTCAGCTTCCTGCTGCTTGTCGTCTTCAAACGCCGCCGCCCAGCCGATGTAATGGTATAATTGCCTATACCTTATCTTTAACATTTTCCTCATATCACATGCATGCATAGCACTATTATTGCAGTATTCACGGCTTTTCTGTCCCAAAATAATTGGAGTTGTAATCTTATATTCATTTCAATTTTGTTTTCTTTTAAATCAATTAGTCACCTAATTTAAAATGAAAAACTCGTTAGATTTCGACCATTTTGCGATGGATGAGGCATCCCTAATGTGAAATGAAAATACAGATAATAGTAATGGCGAAGGTGTCGCAGCTCCGACTGTATCTCCAGTAAGTTCACCAGAAAATTCACCCGACGAAGAAGAAGATGGTGAAGCTCGTCCGACGACGTGGACTACGACAACATGGGATCAGCCCAGTTTTCCTTCTACAATAGGCTCTGATGAAAATGTACCAATCACCGGAGGTGTCCCATCGGACGGCGGTCGTAGCTTAATCAACTTCGCCGGCCTTGTATATCATCTCATTACTCTCAACATACTTTTCATACTTTTGTTACATTAA

mRNA sequence

ATGCCTTTGCTCCGCTCTCAGTGGCGGGGGGGGCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTGGCGCCGCCGCTTCCCTCGGTGTCACCATTAACCAGACTCGTGCTCTTCAGCTTCCTGCTGCTTGTCGTCTTCAAACGCCGCCGCCCAGCCGATGTAATGATAATAGTAATGGCGAAGGTGTCGCAGCTCCGACTGTATCTCCAGTAAGTTCACCAGAAAATTCACCCGACGAAGAAGAAGATGGTGAAGCTCGTCCGACGACGTGGACTACGACAACATGGGATCAGCCCAGTTTTCCTTCTACAATAGGCTCTGATGAAAATGTACCAATCACCGGAGGTGTCCCATCGGACGGCGGTCGTAGCTTAATCAACTTCGCCGGCCTTGTATATCATCTCATTACTCTCAACATACTTTTCATACTTTTGTTACATTAA

Coding sequence (CDS)

ATGCCTTTGCTCCGCTCTCAGTGGCGGGGGGGGCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTGGCGCCGCCGCTTCCCTCGGTGTCACCATTAACCAGACTCGTGCTCTTCAGCTTCCTGCTGCTTGTCGTCTTCAAACGCCGCCGCCCAGCCGATGTAATGATAATAGTAATGGCGAAGGTGTCGCAGCTCCGACTGTATCTCCAGTAAGTTCACCAGAAAATTCACCCGACGAAGAAGAAGATGGTGAAGCTCGTCCGACGACGTGGACTACGACAACATGGGATCAGCCCAGTTTTCCTTCTACAATAGGCTCTGATGAAAATGTACCAATCACCGGAGGTGTCCCATCGGACGGCGGTCGTAGCTTAATCAACTTCGCCGGCCTTGTATATCATCTCATTACTCTCAACATACTTTTCATACTTTTGTTACATTAA

Homology

[Close]

BLAST of CSPI06G22080 vs. TrEMBL
Match: A0A0A0KGC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410100 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 7.1e-57
Identity = 119/126 (94.44%), Postives = 119/126 (94.44%), Query Frame = 1


Query: 59  GGAAASLGVTINQTRALQLPAACRLQTPPPSRCNDNSNGEGVAAPTVSPVSSPENSPDEE 118
           GGAAASLGVTINQTRALQLPAACRLQTPPPSRCN      GVAAPTVSPVSSPENSPDEE
Sbjct: 83  GGAAASLGVTINQTRALQLPAACRLQTPPPSRCN------GVAAPTVSPVSSPENSPDEE 142

Query: 119 EDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGGRSLINFAGLVYHLITLNIL 178
           EDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGG SLINFAGLVYHLITLNIL
Sbjct: 143 EDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGGHSLINFAGLVYHLITLNIL 202

Query: 179 FILLLH 185
           FILLLH
Sbjct: 203 FILLLH 202

[Close]

BLAST of CSPI06G22080 vs. TrEMBL
Match: A0A022RNC7_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a023645mg PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 50/115 (43.48%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 59  GGAAASLGVTINQTRALQLPAACRLQTPPPSRCNDNSNGEGVAAPTVSPVSSPENSPDEE 118
           GG   S+GV INQT AL LP+AC+++TPP SRC      + V  PT+SP+ SPE+SP E 
Sbjct: 75  GGGGGSVGVNINQTLALGLPSACKVETPPISRC------DAVNGPTISPMGSPESSPPES 134

Query: 119 EDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGGRSLINFAGLVYHLI 174
           E+G            D P  PS  GS + VP + G  S+G  S IN   L  + I
Sbjct: 135 ENGSP----------DSPISPSLTGS-KTVP-SNGATSNGSTSNINLLQLATNFI 171

[Close]

BLAST of CSPI06G22080 vs. TrEMBL
Match: A0A0D2R6E1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G003700 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.2e-09
Identity = 55/125 (44.00%), Postives = 69/125 (55.20%), Query Frame = 1


Query: 60  GAAASLGVTINQTRALQLPAACRLQTPPPSRCNDNSNGEGVAAPTVSPVSSPENSPDEEE 119
           G  +SLGVTINQTRAL LP AC +QTPP SRCN  +NG   A+P VS   SP  S D  +
Sbjct: 76  GGGSSLGVTINQTRALSLPGACNVQTPPVSRCNAAANGP--ASPPVSSAVSP--SADSSD 135

Query: 120 DGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGGRSLINFAGLVYHLITLNILF 179
           D     T  T+ T   PS PS  GS + VP T G  S+G       A  ++ L   + + 
Sbjct: 136 D-----TPDTSVTSSMPSIPSGTGS-KTVPTTEGSISNGSIMEKQLALTLFTLFIASYVS 190

Query: 180 ILLLH 185
           I+ L+
Sbjct: 196 IIALY 190

[Close]

BLAST of CSPI06G22080 vs. TrEMBL
Match: A0A059A891_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03346 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.2e-09
Identity = 50/119 (42.02%), Postives = 64/119 (53.78%), Query Frame = 1


Query: 60  GAAASLGVTINQTRALQLPAACRLQTPPPSRCNDNSN---GEGVAAPTVSPVSSPENSPD 119
           GAA   G+TINQT A+ LP AC ++TPP S+CN  +N     GV AP   PV+SPE SP 
Sbjct: 74  GAAPVFGITINQTLAMALPNACNVKTPPISQCNAVANAPTAAGVGAPEEPPVASPEGSPA 133

Query: 120 EEED---GEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDG--GRSLINFAGLVY 171
           E  +     A P   TT        PS  G  + VP T G  SDG   ++ ++ A LV+
Sbjct: 134 ESSNDTPNAAAPAASTT--------PSGTGGSKAVPSTNGNTSDGSIAKAQLHLAALVF 184

[Close]

BLAST of CSPI06G22080 vs. TrEMBL
Match: F6HI51_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0151g00740 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 47/96 (48.96%), Postives = 55/96 (57.29%), Query Frame = 1


Query: 63  ASLGVTINQTRALQLPAACRLQTPPPSRCNDNSNGEGVAAPTVSPVSSPENSPDEEEDGE 122
           A LG+TINQT ALQLP AC ++TP  S+CN      G  A  +SP SSP +S DE  D  
Sbjct: 205 AGLGITINQTLALQLPGACNVKTPSVSQCN---AANGPTASAISPESSPADSSDETPD-- 264

Query: 123 ARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDG 159
                 T TT   PS PS  GS ++VP T G  SDG
Sbjct: 265 -----VTPTTQSLPSIPSGTGS-KSVPATDGSTSDG 289

[Close]

BLAST of CSPI06G22080 vs. TAIR10
Match: AT3G22600.1 (AT3G22600.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-07
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1


Query: 60  GAAASLGVTINQTRALQLPAACRLQTPPPSRCNDNSNGEGVAAPTVSPVSSPENS 115
           G  + LG+ +NQT+AL LP AC +QTPP SRCN    G G  + + SP  SP +S
Sbjct: 74  GGGSQLGINVNQTQALGLPRACNVQTPPVSRCNTGGGGGG--STSDSPAESPNSS 126

[Close]

BLAST of CSPI06G22080 vs. NCBI nr
Match: gi|778716223|ref|XP_004140225.2| (PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Cucumis sativus])

HSP 1 Score: 244.2 bits (622), Expect = 1.8e-61
Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = 1


Query: 59  GGAAASLGVTINQTRALQLPAACRLQTPPPSRCNDNSNGEGVAAPTVSPVSSPENSPDEE 118
           GGAAASLGVTINQTRALQLPAACRLQTPPPSRCNDNSN EGVAAPTVSPVSSPENSPDEE
Sbjct: 83  GGAAASLGVTINQTRALQLPAACRLQTPPPSRCNDNSNDEGVAAPTVSPVSSPENSPDEE 142

Query: 119 EDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGGRSLINFAGLVYHLITLNIL 178
           EDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGG SLINFAGLVYHLITLNIL
Sbjct: 143 EDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGGHSLINFAGLVYHLITLNIL 202

Query: 179 FILLLH 185
           FILLLH
Sbjct: 203 FILLLH 208

[Close]

BLAST of CSPI06G22080 vs. NCBI nr
Match: gi|700192700|gb|KGN47904.1| (hypothetical protein Csa_6G410100 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 1.0e-56
Identity = 119/126 (94.44%), Postives = 119/126 (94.44%), Query Frame = 1


Query: 59  GGAAASLGVTINQTRALQLPAACRLQTPPPSRCNDNSNGEGVAAPTVSPVSSPENSPDEE 118
           GGAAASLGVTINQTRALQLPAACRLQTPPPSRCN      GVAAPTVSPVSSPENSPDEE
Sbjct: 83  GGAAASLGVTINQTRALQLPAACRLQTPPPSRCN------GVAAPTVSPVSSPENSPDEE 142

Query: 119 EDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGGRSLINFAGLVYHLITLNIL 178
           EDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGG SLINFAGLVYHLITLNIL
Sbjct: 143 EDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGGHSLINFAGLVYHLITLNIL 202

Query: 179 FILLLH 185
           FILLLH
Sbjct: 203 FILLLH 202

[Close]

BLAST of CSPI06G22080 vs. NCBI nr
Match: gi|659097100|ref|XP_008449442.1| (PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 1.8e-37
Identity = 95/127 (74.80%), Postives = 106/127 (83.46%), Query Frame = 1


Query: 59  GGAAASLGVTINQTRALQLPAACRLQTPPPSRCNDNSNGEGVAAPTVSPVSSPENSPDEE 118
           GGAAASLGVTINQTRALQLPAACRLQTPPPSRCN+N+N EG+A PTVSPVSSPENSPDEE
Sbjct: 81  GGAAASLGVTINQTRALQLPAACRLQTPPPSRCNENNN-EGLATPTVSPVSSPENSPDEE 140

Query: 119 EDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGGRSL-INFAGLVYHLITLNI 178
           EDGEA P+TW TTTWDQ SFPST  S E VPITGG+PSDGG+SL IN    +  L++   
Sbjct: 141 EDGEA-PSTW-TTTWDQTSFPSTTDS-ETVPITGGIPSDGGQSLMINSPFYIISLLSAYF 200

Query: 179 LFILLLH 185
            +I LL+
Sbjct: 201 CYIKLLN 203

[Close]

BLAST of CSPI06G22080 vs. NCBI nr
Match: gi|848863155|ref|XP_012832347.1| (PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Erythranthe guttata])

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 50/115 (43.48%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 59  GGAAASLGVTINQTRALQLPAACRLQTPPPSRCNDNSNGEGVAAPTVSPVSSPENSPDEE 118
           GG   S+GV INQT AL LP+AC+++TPP SRC      + V  PT+SP+ SPE+SP E 
Sbjct: 75  GGGGGSVGVNINQTLALGLPSACKVETPPISRC------DAVNGPTISPMGSPESSPPES 134

Query: 119 EDGEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDGGRSLINFAGLVYHLI 174
           E+G            D P  PS  GS + VP + G  S+G  S IN   L  + I
Sbjct: 135 ENGSP----------DSPISPSLTGS-KTVP-SNGATSNGSTSNINLLQLATNFI 171

[Close]

BLAST of CSPI06G22080 vs. NCBI nr
Match: gi|702499854|ref|XP_010038078.1| (PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 isoform X1 [Eucalyptus grandis])

HSP 1 Score: 70.1 bits (170), Expect = 4.6e-09
Identity = 50/119 (42.02%), Postives = 64/119 (53.78%), Query Frame = 1


Query: 60  GAAASLGVTINQTRALQLPAACRLQTPPPSRCNDNSN---GEGVAAPTVSPVSSPENSPD 119
           GAA   G+TINQT A+ LP AC ++TPP S+CN  +N     GV AP   PV+SPE SP 
Sbjct: 74  GAAPVFGITINQTLAMALPNACNVKTPPISQCNAVANAPTAAGVGAPEEPPVASPEGSPA 133

Query: 120 EEED---GEARPTTWTTTTWDQPSFPSTIGSDENVPITGGVPSDG--GRSLINFAGLVY 171
           E  +     A P   TT        PS  G  + VP T G  SDG   ++ ++ A LV+
Sbjct: 134 ESSNDTPNAAAPAASTT--------PSGTGGSKAVPSTNGNTSDGSIAKAQLHLAALVF 184

The following BLAST results are available for this feature:

BLAST of CSPI06G22080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G22080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGC1_CUCSA	7.1e-57	94.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410100 PE=4 SV=1	[more]
A0A022RNC7_ERYGU	1.7e-10	43.48	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a023645mg PE=3 SV=1	[more]
A0A0D2R6E1_GOSRA	3.2e-09	44.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G003700 PE=3 SV=1	[more]
A0A059A891_EUCGR	3.2e-09	42.02	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03346 PE=3 SV=1	[more]
F6HI51_VITVI	5.5e-09	48.96	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0151g00740 PE=3 SV=...	[more]

BLAST of CSPI06G22080 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22600.1	1.6e-07	49.09	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of CSPI06G22080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778716223\|ref\|XP_004140225.2\|	1.8e-61	98.41	PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Cucumis s...	[more]
gi\|700192700\|gb\|KGN47904.1\|	1.0e-56	94.44	hypothetical protein Csa_6G410100 [Cucumis sativus]	[more]
gi\|659097100\|ref\|XP_008449442.1\|	1.8e-37	74.80	PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Cucumis m...	[more]
gi\|848863155\|ref\|XP_012832347.1\|	2.5e-10	43.48	PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Erythrant...	[more]
gi\|702499854\|ref\|XP_010038078.1\|	4.6e-09	42.02	PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 isoform X1...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G22080.1	CSPI06G22080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 62..94 score: 7.
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 63..180 score: 7.7
None	No IPR available	PANTHER	PTHR33044:SF36	SUBFAMILY NOT NAMED	coord: 63..180 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G22080	Csa6G410100	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G22080	MELO3C014396	Melon (DHL92) v3.5.1	cpimeB491
CSPI06G22080	MELO3C031073.2	Melon (DHL92) v3.6.1	cpimedB478
CSPI06G22080	CsaV3_6G037170	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G22080	Cla97C07G128640	Watermelon (97103) v2	cpiwmbB509
CSPI06G22080	Bhi05G000230	Wax gourd	cpiwgoB568
CSPI06G22080	Cucsa.184540	Cucumber (Gy14) v1	cgycpiB292
CSPI06G22080	CsGy6G021340	Cucumber (Gy14) v2	cgybcpiB287

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G22080	Silver-seed gourd	carcpiB0788
CSPI06G22080	Silver-seed gourd	carcpiB0789
CSPI06G22080	Watermelon (97103) v2	cpiwmbB505
CSPI06G22080	Wax gourd	cpiwgoB572
CSPI06G22080	Watermelon (97103) v1	cpiwmB501
CSPI06G22080	Cucurbita maxima (Rimu)	cmacpiB526
CSPI06G22080	Cucurbita maxima (Rimu)	cmacpiB530
CSPI06G22080	Cucurbita maxima (Rimu)	cmacpiB642
CSPI06G22080	Cucurbita moschata (Rifu)	cmocpiB519
CSPI06G22080	Cucurbita moschata (Rifu)	cmocpiB635
CSPI06G22080	Watermelon (Charleston Gray)	cpiwcgB518
CSPI06G22080	Watermelon (Charleston Gray)	cpiwcgB513
CSPI06G22080	Watermelon (97103) v1	cpiwmB505
CSPI06G22080	Cucurbita pepo (Zucchini)	cpecpiB250
CSPI06G22080	Cucurbita pepo (Zucchini)	cpecpiB254
CSPI06G22080	Cucurbita pepo (Zucchini)	cpecpiB751
CSPI06G22080	Bottle gourd (USVL1VR-Ls)	cpilsiB466
CSPI06G22080	Bottle gourd (USVL1VR-Ls)	cpilsiB473