CSPI06G21960 (gene) Wild cucumber (PI 183967)

NameCSPI06G21960
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionOuter envelope membrane protein 7
LocationChr6 : 19915682 .. 19915900 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAACAAGTCCTCTGAGACCAAGCAAGCTTTCTTCGTCTTCGGAGCCTTGGCGATGGGCTGGCTCGCCATTGAGATGGCTTTCAAACCCTTACTCGGTAAGGCCCGCTCCGCCATGGACAAATCTGATCCCGCTCGGGATCCTGACGAACTTCTCGATAACCAATTCGATCACACCTCATCTGATGACGATCGAAATGCCACTGGCACTGCTTAA

mRNA sequence

ATGACCAACAAGTCCTCTGAGACCAAGCAAGCTTTCTTCGTCTTCGGAGCCTTGGCGATGGGCTGGCTCGCCATTGAGATGGCTTTCAAACCCTTACTCGGTAAGGCCCGCTCCGCCATGGACAAATCTGATCCCGCTCGGGATCCTGACGAACTTCTCGATAACCAATTCGATCACACCTCATCTGATGACGATCGAAATGCCACTGGCACTGCTTAA

Coding sequence (CDS)

ATGACCAACAAGTCCTCTGAGACCAAGCAAGCTTTCTTCGTCTTCGGAGCCTTGGCGATGGGCTGGCTCGCCATTGAGATGGCTTTCAAACCCTTACTCGGTAAGGCCCGCTCCGCCATGGACAAATCTGATCCCGCTCGGGATCCTGACGAACTTCTCGATAACCAATTCGATCACACCTCATCTGATGACGATCGAAATGCCACTGGCACTGCTTAA
BLAST of CSPI06G21960 vs. Swiss-Prot
Match: OEP7_ARATH (Outer envelope membrane protein 7 OS=Arabidopsis thaliana GN=OEP7 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-09
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1

Query: 4  KSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDE 52
          K+S  KQA  V  A+A+GWLAIE+AFKP L K RS++DKSDP +DPD+
Sbjct: 3  KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDD 50

BLAST of CSPI06G21960 vs. TrEMBL
Match: A0A0A0KJE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G409970 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-27
Identity = 68/72 (94.44%), Postives = 68/72 (94.44%), Query Frame = 1

Query: 1  MTNKSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELLDNQFDHT 60
          MTNKSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELLD    HT
Sbjct: 1  MTNKSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELLD----HT 60

Query: 61 SSDDDRNATGTA 73
          SSDDDRNATGTA
Sbjct: 61 SSDDDRNATGTA 68

BLAST of CSPI06G21960 vs. TrEMBL
Match: A0A061DQW7_THECC (Outer envelope membrane protein 7 OS=Theobroma cacao GN=TCM_004421 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-11
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 1

Query: 4  KSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELL--DNQFDHTS 63
          KS+  KQA  VFGALA GWLAIEMAFKP+L KAR+AMDKSDP RDPD++   +N  D  S
Sbjct: 3  KSTAMKQAAVVFGALAFGWLAIEMAFKPILDKARAAMDKSDPDRDPDDIAVRNNASDRES 62

BLAST of CSPI06G21960 vs. TrEMBL
Match: U5GS80_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s05560g PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.7e-11
Identity = 40/55 (72.73%), Postives = 42/55 (76.36%), Query Frame = 1

Query: 9  KQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELLDNQFDHTSSD 64
          KQA FVFGALA GWLAIEMAFKP L KARSA DKSDPARDP +  D+  DH   D
Sbjct: 7  KQAIFVFGALAFGWLAIEMAFKPFLDKARSAEDKSDPARDPGD-DDDSADHAQKD 60

BLAST of CSPI06G21960 vs. TrEMBL
Match: B9H870_POPTR (Outer envelope membrane family protein OS=Populus trichocarpa GN=POPTR_0005s22960g PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.8e-11
Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 1

Query: 9  KQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPD 51
          KQA  VFGALA GWLAIEMAFKP L KARSAMDKSDPARDPD
Sbjct: 7  KQAAVVFGALAFGWLAIEMAFKPFLDKARSAMDKSDPARDPD 48

BLAST of CSPI06G21960 vs. TrEMBL
Match: A0A0D2P8S1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G081500 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-10
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 1

Query: 4  KSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDEL 53
          KS+  KQA  V GALA GW+AIEMAFKPLL KARSAMD SDP RDPD++
Sbjct: 3  KSTPVKQAAVVLGALAFGWMAIEMAFKPLLDKARSAMDNSDPDRDPDDI 51

BLAST of CSPI06G21960 vs. TAIR10
Match: AT3G52420.1 (AT3G52420.1 outer envelope membrane protein 7)

HSP 1 Score: 63.5 bits (153), Expect = 6.0e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1

Query: 4  KSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDE 52
          K+S  KQA  V  A+A+GWLAIE+AFKP L K RS++DKSDP +DPD+
Sbjct: 3  KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDD 50

BLAST of CSPI06G21960 vs. NCBI nr
Match: gi|700192687|gb|KGN47891.1| (hypothetical protein Csa_6G409970 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.9e-27
Identity = 68/72 (94.44%), Postives = 68/72 (94.44%), Query Frame = 1

Query: 1  MTNKSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELLDNQFDHT 60
          MTNKSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELLD    HT
Sbjct: 1  MTNKSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELLD----HT 60

Query: 61 SSDDDRNATGTA 73
          SSDDDRNATGTA
Sbjct: 61 SSDDDRNATGTA 68

BLAST of CSPI06G21960 vs. NCBI nr
Match: gi|659097128|ref|XP_008449458.1| (PREDICTED: uncharacterized protein LOC103491335 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-21
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 1

Query: 1  MTNKSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELLDNQFDHT 60
          M+ + S T QAFFVF ALAMGWLAIEMAFKP L KARSAMDKSDPARDPDEL+DNQ DHT
Sbjct: 1  MSKRPSGTTQAFFVFSALAMGWLAIEMAFKPFLDKARSAMDKSDPARDPDELVDNQSDHT 60

Query: 61 SSDDDRNATGTA 73
          SSDDD++   T+
Sbjct: 61 SSDDDQSTIVTS 72

BLAST of CSPI06G21960 vs. NCBI nr
Match: gi|1009109071|ref|XP_015888091.1| (PREDICTED: uncharacterized protein LOC107423084 [Ziziphus jujuba])

HSP 1 Score: 82.0 bits (201), Expect = 4.6e-13
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 1

Query: 4   KSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELLDNQFDHTSSD 63
           K+S TKQA  VFGALA GW+AIE+AFKPLL KARSA+DKSDPARDPD+++D+     SS 
Sbjct: 94  KTSATKQAMVVFGALAFGWMAIELAFKPLLDKARSALDKSDPARDPDDVVDDSAAGKSST 153

Query: 64  DD 66
            D
Sbjct: 154 AD 155

BLAST of CSPI06G21960 vs. NCBI nr
Match: gi|764534535|ref|XP_011458616.1| (PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein [Fragaria vesca subsp. vesca])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-12
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1

Query: 1  MTNKSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELLDNQFDHT 60
          M  K S  KQA  VFGALA+GWLAIE+AFKP L KARSAM+KSDPARDPD++++ + D  
Sbjct: 1  MAKKGSAAKQAAVVFGALAVGWLAIELAFKPWLDKARSAMNKSDPARDPDDVVEAEEDTA 60

Query: 61 SSDDD 66
          +  DD
Sbjct: 61 AKTDD 65

BLAST of CSPI06G21960 vs. NCBI nr
Match: gi|1009164842|ref|XP_015900717.1| (PREDICTED: outer envelope membrane protein 7-like [Ziziphus jujuba])

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-12
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 1

Query: 4  KSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELLDNQFDHTSSD 63
          K+S TKQA  VFGALA GW+AIE+AFKPLL KARSA+DKSDP RDPD+++D+      S 
Sbjct: 3  KTSATKQAMVVFGALAFGWMAIELAFKPLLDKARSALDKSDPDRDPDDVVDDSAAAGKSS 62

Query: 64 DDRNATG 71
               TG
Sbjct: 63 TADEKTG 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OEP7_ARATH1.1e-0962.50Outer envelope membrane protein 7 OS=Arabidopsis thaliana GN=OEP7 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KJE9_CUCSA1.4e-2794.44Uncharacterized protein OS=Cucumis sativus GN=Csa_6G409970 PE=4 SV=1[more]
A0A061DQW7_THECC1.4e-1166.13Outer envelope membrane protein 7 OS=Theobroma cacao GN=TCM_004421 PE=4 SV=1[more]
U5GS80_POPTR6.7e-1172.73Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s05560g PE=4 SV=1[more]
B9H870_POPTR8.8e-1188.10Outer envelope membrane family protein OS=Populus trichocarpa GN=POPTR_0005s2296... [more]
A0A0D2P8S1_GOSRA1.2e-1073.47Uncharacterized protein OS=Gossypium raimondii GN=B456_004G081500 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G52420.16.0e-1162.50 outer envelope membrane protein 7[more]
Match NameE-valueIdentityDescription
gi|700192687|gb|KGN47891.1|1.9e-2794.44hypothetical protein Csa_6G409970 [Cucumis sativus][more]
gi|659097128|ref|XP_008449458.1|3.5e-2176.39PREDICTED: uncharacterized protein LOC103491335 [Cucumis melo][more]
gi|1009109071|ref|XP_015888091.1|4.6e-1367.74PREDICTED: uncharacterized protein LOC107423084 [Ziziphus jujuba][more]
gi|764534535|ref|XP_011458616.1|1.0e-1263.08PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein [Fragaria vesca s... [more]
gi|1009164842|ref|XP_015900717.1|5.1e-1261.19PREDICTED: outer envelope membrane protein 7-like [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006396 RNA processing
cellular_component GO:0005575 cellular_component
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G21960.1CSPI06G21960.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33982FAMILY NOT NAMEDcoord: 9..51
score: 8.3