CSPI06G19800 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G19800
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 17790302 .. 17790751 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAAACTGAAGGAACAAACCAGTTGGTCATTTAACTACAAATCATTCCATGCTGAAAAAGCACTTGTATCATTTGAAAACAAATATCAAGCTACCATCATGTGTAAAAACAGGGGCTGGAACCCTGTTGATAAATTTTATATTAAGTTTGAGGAATGGAACACCATGAAACATGGCTCCCCAAAGCTAGTCCCAAGTTACGGTGGTTGGGTTAACTTTAGAGGCATTCTGATGCATGCATGGGATATGGAAACGTTCACACAAATTGGGGAGGCTTGTGGTAGTTTCATTGAGATAACCAGAGAAATAAAGAAACAAGTAGAAATCAGAGAAGCGATGCTCAAAGTCAAAGAAAACTTTACTGGTTTTATTCCGGCATTTATCAACGTATTTGACAAAAAAGGAAATTATTTTCTTGTCCAATCCATTGTCCAGGCTGAAGGAAAA

mRNA sequence

ATGAGAAAACTGAAGGAACAAACCAGTTGGTCATTTAACTACAAATCATTCCATGCTGAAAAAGCACTTGTATCATTTGAAAACAAATATCAAGCTACCATCATGTGTAAAAACAGGGGCTGGAACCCTGTTGATAAATTTTATATTAAGTTTGAGGAATGGAACACCATGAAACATGGCTCCCCAAAGCTAGTCCCAAGTTACGGTGGTTGGGTTAACTTTAGAGGCATTCTGATGCATGCATGGGATATGGAAACGTTCACACAAATTGGGGAGGCTTGTGGTAGTTTCATTGAGATAACCAGAGAAATAAAGAAACAAGTAGAAATCAGAGAAGCGATGCTCAAAGTCAAAGAAAACTTTACTGGTTTTATTCCGGCATTTATCAACGTATTTGACAAAAAAGGAAATTATTTTCTTGTCCAATCCATTGTCCAGGCTGAAGGAAAA

Coding sequence (CDS)

ATGAGAAAACTGAAGGAACAAACCAGTTGGTCATTTAACTACAAATCATTCCATGCTGAAAAAGCACTTGTATCATTTGAAAACAAATATCAAGCTACCATCATGTGTAAAAACAGGGGCTGGAACCCTGTTGATAAATTTTATATTAAGTTTGAGGAATGGAACACCATGAAACATGGCTCCCCAAAGCTAGTCCCAAGTTACGGTGGTTGGGTTAACTTTAGAGGCATTCTGATGCATGCATGGGATATGGAAACGTTCACACAAATTGGGGAGGCTTGTGGTAGTTTCATTGAGATAACCAGAGAAATAAAGAAACAAGTAGAAATCAGAGAAGCGATGCTCAAAGTCAAAGAAAACTTTACTGGTTTTATTCCGGCATTTATCAACGTATTTGACAAAAAAGGAAATTATTTTCTTGTCCAATCCATTGTCCAGGCTGAAGGAAAA

Homology

[Close]

BLAST of CSPI06G19800 vs. TrEMBL
Match: A0A0A0KFP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.5e-81
Identity = 146/150 (97.33%), Postives = 148/150 (98.67%), Query Frame = 1


Query: 1   MRKLKEQTSWSFNYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG 60
           MRKLKEQT+WSF YKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG
Sbjct: 1   MRKLKEQTNWSFTYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG 60

Query: 61  SPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIREAMLKVKEN 120
           SPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIR+AMLKVKEN
Sbjct: 61  SPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKEN 120

Query: 121 FTGFIPAFINVFDKKGNYFLVQSIVQAEGK 151
           FTGFIPAFINVFDKKGN FLVQSIVQAEGK
Sbjct: 121 FTGFIPAFINVFDKKGNSFLVQSIVQAEGK 150

[Close]

BLAST of CSPI06G19800 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 9.5e-44
Identity = 75/150 (50.00%), Postives = 111/150 (74.00%), Query Frame = 1


Query: 1   MRKLKEQTSWSFNYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG 60
           + KL EQ   + +YK FHA KAL+ F++  QA ++CKN+GW  V +FY+KFEEWN   H 
Sbjct: 147 VEKLNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGRFYVKFEEWNQKDHA 206

Query: 61  SPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIREAMLKVKEN 120
           SPK VPSYGGW+  R + +HAW++E+F QIG+ACG F+E+ +E ++  ++ EA ++VK+N
Sbjct: 207 SPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDN 266

Query: 121 FTGFIPAFINVFDKKGNYFLVQSIVQAEGK 151
           ++GFIPAFI + DK+   +++Q IV+ EGK
Sbjct: 267 YSGFIPAFIKLIDKEERSYIIQVIVKTEGK 296

[Close]

BLAST of CSPI06G19800 vs. TrEMBL
Match: A0A0A0KNC5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G465580 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-27
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 1


Query: 1   MRKLKEQTSW-SFNYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKH 60
           M KL+EQ    +  YK FHAEKA+V  E K    ++CKNRGW  + KFY+KFE WN  KH
Sbjct: 189 MEKLQEQLDHLNITYKLFHAEKAMVFLEEKNMVNLLCKNRGWTTIGKFYVKFEAWNISKH 248

Query: 61  GSPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITR 103
            +PK++ SY GWV F+GI +HAW+  +F QIGE CG F+E+ R
Sbjct: 249 ATPKVLSSYVGWVKFKGIPLHAWNYSSFYQIGEVCGGFVEVAR 291

[Close]

BLAST of CSPI06G19800 vs. TrEMBL
Match: A0A0A0K120_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004025 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 1   MRKLKEQTSWSFNYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG 60
           M KL+EQ   +  YK FHAEK  V+ E+K    ++CKNRGW  V K+Y+KFE  N  KH 
Sbjct: 97  MAKLQEQLDLNITYKPFHAEKVAVTIEDKNLVNLLCKNRGWTTVGKYYVKFEASNIAKHA 156

Query: 61  SPKLVPSYGG 71
           SPK +PSYGG
Sbjct: 157 SPKCLPSYGG 166

[Close]

BLAST of CSPI06G19800 vs. NCBI nr
Match: gi|700192460|gb|KGN47664.1| (hypothetical protein Csa_6G367105 [Cucumis sativus])

HSP 1 Score: 310.1 bits (793), Expect = 2.2e-81
Identity = 146/150 (97.33%), Postives = 148/150 (98.67%), Query Frame = 1


Query: 1   MRKLKEQTSWSFNYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG 60
           MRKLKEQT+WSF YKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG
Sbjct: 1   MRKLKEQTNWSFTYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG 60

Query: 61  SPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIREAMLKVKEN 120
           SPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIR+AMLKVKEN
Sbjct: 61  SPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKEN 120

Query: 121 FTGFIPAFINVFDKKGNYFLVQSIVQAEGK 151
           FTGFIPAFINVFDKKGN FLVQSIVQAEGK
Sbjct: 121 FTGFIPAFINVFDKKGNSFLVQSIVQAEGK 150

[Close]

BLAST of CSPI06G19800 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 184.5 bits (467), Expect = 1.4e-43
Identity = 75/150 (50.00%), Postives = 111/150 (74.00%), Query Frame = 1


Query: 1   MRKLKEQTSWSFNYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG 60
           + KL EQ   + +YK FHA KAL+ F++  QA ++CKN+GW  V +FY+KFEEWN   H 
Sbjct: 147 VEKLNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGRFYVKFEEWNQKDHA 206

Query: 61  SPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIREAMLKVKEN 120
           SPK VPSYGGW+  R + +HAW++E+F QIG+ACG F+E+ +E ++  ++ EA ++VK+N
Sbjct: 207 SPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDN 266

Query: 121 FTGFIPAFINVFDKKGNYFLVQSIVQAEGK 151
           ++GFIPAFI + DK+   +++Q IV+ EGK
Sbjct: 267 YSGFIPAFIKLIDKEERSYIIQVIVKTEGK 296

[Close]

BLAST of CSPI06G19800 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-39
Identity = 68/150 (45.33%), Postives = 106/150 (70.67%), Query Frame = 1


Query: 1   MRKLKEQTSWSFNYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG 60
           ++ L++QT  SF Y +FHA+KALV F +   A ++C+N+GW  V K+ ++FE+W  ++H 
Sbjct: 220 LQNLRKQTEESFTYNAFHADKALVHFSSSIPANLLCQNKGWTTVGKYSVRFEKWCPIQHA 279

Query: 61  SPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIREAMLKVKEN 120
           +PKL+PSYGGW  FRGI +H W+M+TF QIG+ACG  I++  E +    + EA +K++ N
Sbjct: 280 TPKLIPSYGGWTIFRGIPLHLWNMKTFQQIGKACGGLIKVAEETRSAKNLIEAKIKIRYN 339

Query: 121 FTGFIPAFINVFDKKGNYFLVQSIVQAEGK 151
           ++GF+PA + +FD +GN F +Q +   EGK
Sbjct: 340 YSGFLPANVRIFDNEGNKFSIQVVTHPEGK 369

[Close]

BLAST of CSPI06G19800 vs. NCBI nr
Match: gi|700195958|gb|KGN51135.1| (hypothetical protein Csa_5G465580 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-27
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 1


Query: 1   MRKLKEQTSW-SFNYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKH 60
           M KL+EQ    +  YK FHAEKA+V  E K    ++CKNRGW  + KFY+KFE WN  KH
Sbjct: 189 MEKLQEQLDHLNITYKLFHAEKAMVFLEEKNMVNLLCKNRGWTTIGKFYVKFEAWNISKH 248

Query: 61  GSPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITR 103
            +PK++ SY GWV F+GI +HAW+  +F QIGE CG F+E+ R
Sbjct: 249 ATPKVLSSYVGWVKFKGIPLHAWNYSSFYQIGEVCGGFVEVAR 291

[Close]

BLAST of CSPI06G19800 vs. NCBI nr
Match: gi|700187915|gb|KGN43148.1| (hypothetical protein Csa_7G004025 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-14
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 1   MRKLKEQTSWSFNYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG 60
           M KL+EQ   +  YK FHAEK  V+ E+K    ++CKNRGW  V K+Y+KFE  N  KH 
Sbjct: 97  MAKLQEQLDLNITYKPFHAEKVAVTIEDKNLVNLLCKNRGWTTVGKYYVKFEASNIAKHA 156

Query: 61  SPKLVPSYGG 71
           SPK +PSYGG
Sbjct: 157 SPKCLPSYGG 166

The following BLAST results are available for this feature:

BLAST of CSPI06G19800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G19800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFP0_CUCSA	1.5e-81	97.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1	[more]
E5GB30_CUCME	9.5e-44	50.00	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KNC5_CUCSA	1.6e-27	53.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G465580 PE=4 SV=1	[more]
A0A0A0K120_CUCSA	1.6e-14	54.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004025 PE=4 SV=1	[more]

BLAST of CSPI06G19800 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G19800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192460\|gb\|KGN47664.1\|	2.2e-81	97.33	hypothetical protein Csa_6G367105 [Cucumis sativus]	[more]
gi\|307135793\|gb\|ADN33672.1\|	1.4e-43	50.00	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659071590\|ref\|XP_008460776.1\|	1.6e-39	45.33	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me...	[more]
gi\|700195958\|gb\|KGN51135.1\|	2.3e-27	53.40	hypothetical protein Csa_5G465580 [Cucumis sativus]	[more]
gi\|700187915\|gb\|KGN43148.1\|	2.3e-14	54.29	hypothetical protein Csa_7G004025 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025558	DUF4283

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G19800.1	CSPI06G19800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 11..113 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G19800	CsaV3_6G033820	Cucumber (Chinese Long) v3	cpicucB363

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G19800	Melon (DHL92) v3.6.1	cpimedB456
CSPI06G19800	Cucumber (Gy14) v2	cgybcpiB039
CSPI06G19800	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G19800	Silver-seed gourd	carcpiB0163
CSPI06G19800	Silver-seed gourd	carcpiB0683
CSPI06G19800	Cucumber (Chinese Long) v3	cpicucB311
CSPI06G19800	Watermelon (97103) v2	cpiwmbB513
CSPI06G19800	Wax gourd	cpiwgoB580
CSPI06G19800	Wax gourd	cpiwgoB647
CSPI06G19800	Wild cucumber (PI 183967)	cpicpiB041
CSPI06G19800	Cucumber (Gy14) v1	cgycpiB145
CSPI06G19800	Cucumber (Gy14) v1	cgycpiB492
CSPI06G19800	Cucurbita maxima (Rimu)	cmacpiB194
CSPI06G19800	Cucurbita maxima (Rimu)	cmacpiB816
CSPI06G19800	Cucurbita moschata (Rifu)	cmocpiB178
CSPI06G19800	Cucurbita moschata (Rifu)	cmocpiB800
CSPI06G19800	Cucumber (Chinese Long) v2	cpicuB264
CSPI06G19800	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G19800	Melon (DHL92) v3.5.1	cpimeB464
CSPI06G19800	Watermelon (Charleston Gray)	cpiwcgB493
CSPI06G19800	Watermelon (Charleston Gray)	cpiwcgB522
CSPI06G19800	Watermelon (97103) v1	cpiwmB471
CSPI06G19800	Cucurbita pepo (Zucchini)	cpecpiB117
CSPI06G19800	Cucurbita pepo (Zucchini)	cpecpiB839
CSPI06G19800	Bottle gourd (USVL1VR-Ls)	cpilsiB478