CSPI06G19190 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G19190
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionAnkyrin repeat-containing protein
LocationChr6 : 17373331 .. 17374472 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGACAGAACAATAATGGAGCTGAATCAGTAGCAATAACAATAGACACAACAGACGATACAGGTCATGAGAAGAACAAGATGATGAACAACAATAATTGGATGAGAGAAGACACAGATTTCCTAATGGTAGTAACGACATTCATTGCAACCGTAGCATTTCAAATCGGGACGAACCCGCCGGGTGGCGTATGGCAAGAAGACGATAAACAGGGAAAGTACTTTGCTGGGAAATCCATAATGGCTACAAAATCTCCTTCTGATTTCATTGGATTTTTGGTAACAATTACAGCTTGCTTTGTGTTTTCAGCAATGCAATTCGCTGTTCTGTTCCTTAAGAAATGGCCAGTTGGTGCCAAAAATTGGTCATTTTCAAGGTTCATTCTTTATTCAACTATGGGATTGGCCGTTTCTTCCATGGGATTTGCTTATGGATGCTCTGTTAGAGCTTACACACCTGACTCAGAGGAAAATACTCTTTTTGTTATTTCTTTTATTACTATGTTGGGATTTCCTATTAGTTTGGCTGCCATTTCAATTTATTTACAATACTTTAGTAAATCTTCATCTTCTTAAATGTTTATATCACATCCTTTGTTTTCATTTCTGTATGTCCTTAAATTTGATTTTTGTGAGGATTTTTAATATTTTGCCAAAACTAAACATAGATTAAATAGTCCAAACATAAATTGTGTTTTGTAATTTATTACCCACGCATATAAACTAATAATTATTAAATTACTTCCAACAGCTAGCCAAAGTATATATAAAACTCTCTCATCAATAACAACCAAGTATATATCAACACAAACAAATTAAAGATTTCCGAATTCCATTAACAATGTCAAGAGAAGTAGCAGATGACTCAGTACTTCCAATAGAAACTGATCAAACTATAAATGTTAAGGATAAAGAAAATCGAAAGAAGAAGAATGAAGGAGGAGAAAGGGATAGGGATTTTCTAATGGTAGCAACAACATTCATTGCAGCCATGGCTTTCCAAGCCGGGACGAATCCTCCAGGCGGCGTATGGCAAGAACGACAGCAACCCGAACTACGAACAAGGCAAATTCATAATGGCTACGAAATCTCCTTCTTTATTCATCAGTTTCATGAGCGACGTTACGGTTTGTTTCGCA

mRNA sequence

ATGTCAAGACAGAACAATAATGGAGCTGAATCAGTAGCAATAACAATAGACACAACAGACGATACAGGTCATGAGAAGAACAAGATGATGAACAACAATAATTGGATGAGAGAAGACACAGATTTCCTAATGGTAGTAACGACATTCATTGCAACCGTAGCATTTCAAATCGGGACGAACCCGCCGGGTGGCGTATGGCAAGAAGACGATAAACAGGGAAAGTACTTTGCTGGGAAATCCATAATGGCTACAAAATCTCCTTCTGATTTCATTGGATTTTTGCCATGGCTTTCCAAGCCGGGACGAATCCTCCAGGCGGCGTATGGCAAGAACGACAGCAACCCGAACTACGAACAAGGCAAATTCATAATGGCTACGAAATCTCCTTCTTTATTCATCAGTTTCATGAGCGACGTTACGGTTTGTTTCGCA

Coding sequence (CDS)

ATGTCAAGACAGAACAATAATGGAGCTGAATCAGTAGCAATAACAATAGACACAACAGACGATACAGGTCATGAGAAGAACAAGATGATGAACAACAATAATTGGATGAGAGAAGACACAGATTTCCTAATGGTAGTAACGACATTCATTGCAACCGTAGCATTTCAAATCGGGACGAACCCGCCGGGTGGCGTATGGCAAGAAGACGATAAACAGGGAAAGTACTTTGCTGGGAAATCCATAATGGCTACAAAATCTCCTTCTGATTTCATTGGATTTTTGCCATGGCTTTCCAAGCCGGGACGAATCCTCCAGGCGGCGTATGGCAAGAACGACAGCAACCCGAACTACGAACAAGGCAAATTCATAATGGCTACGAAATCTCCTTCTTTATTCATCAGTTTCATGAGCGACGTTACGGTTTGTTTCGCA
Homology
[Close]
BLAST of CSPI06G19190 vs. TrEMBL
Match: A0A0A0KGU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363530 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.0e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MSRQNNNGAESVAITIDTTDDTGHEKNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTN 60
          MSRQNNNGAESVAITIDTTDDTGHEKNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTN
Sbjct: 1  MSRQNNNGAESVAITIDTTDDTGHEKNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTN 60

Query: 61 PPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFL 95
          PPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFL
Sbjct: 61 PPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFL 94

[Close]
BLAST of CSPI06G19190 vs. TrEMBL
Match: A0A0A0KIL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363520 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.0e-15
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 

Query: 1  MSRQNNNGAESVAITIDTTDDTGHEKNKMMNNNNWMRE-DTDFLMVVTTFIATVAFQIGT 60
          MS+      E+  ++IDT  +  ++K++   N+ WM+  D DF+MVV TFIA VAFQ+G 
Sbjct: 1  MSKAGAKNEEATVVSIDTASE--NKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGI 60

Query: 61 NPPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFL 95
          NPPG VWQE DK G + AGKSIMA+KSPS++  F+
Sbjct: 61 NPPGSVWQE-DKNG-FTAGKSIMASKSPSEYKKFM 91

[Close]
BLAST of CSPI06G19190 vs. TrEMBL
Match: A0A0A0KFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363010 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-11
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 1 

Query: 26  KNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTNPPGGVWQEDDKQGKYFAGKSIMATK 85
           +N+  +     + D + LMV+ TFI T++FQ GTNPPGGVWQE  +     AGKSIMA+K
Sbjct: 17  ENQTSSEKTLQKADIELLMVIITFIGTISFQAGTNPPGGVWQEGPE-----AGKSIMASK 76

Query: 86  SPSDFIGFLPWLSKPGRILQAA 108
           +PS F+ F+  ++  G +L AA
Sbjct: 77  NPSQFVVFIVGVT-VGMVLSAA 92

[Close]
BLAST of CSPI06G19190 vs. TrEMBL
Match: A0A103XMP5_CYNCS (Ankyrin repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_004407 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-08
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1 

Query: 31  NNNNWMREDTDFLMVVTTFIATVAFQIGTNPPGGVWQED--DKQGKYFAGKSIMATKSP- 90
           N  +W+ +  + LMVV +FIAT+AFQ+GTNPP GVWQED  D     +AG ++MA   P 
Sbjct: 175 NREDWLDKKGNVLMVVASFIATMAFQVGTNPPSGVWQEDKLDAIPPEYAGYAVMANNHPV 234

Query: 91  -------SDFIGFLPWLS 99
                  S+ +GF+  LS
Sbjct: 235 LHHIFLISNTVGFVSTLS 252

[Close]
BLAST of CSPI06G19190 vs. TrEMBL
Match: A0A103XBQ4_CYNCS (Ankyrin repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_024936 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-08
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1 

Query: 31  NNNNWMREDTDFLMVVTTFIATVAFQIGTNPPGGVWQED--DKQGKYFAGKSIMATKSP- 90
           N ++W+ +  + LMVV +FIAT+AFQ+GTNPP GVWQED  D      AG ++MA   P 
Sbjct: 274 NRHDWLDKKQNTLMVVASFIATMAFQVGTNPPSGVWQEDKPDAIPPRHAGYAVMANNHPV 333

Query: 91  -------SDFIGFLPWLS 99
                  S+ +GFL  LS
Sbjct: 334 LHHIFLISNTVGFLSTLS 351

[Close]
BLAST of CSPI06G19190 vs. NCBI nr
Match: gi|778715279|ref|XP_011657373.1| (PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 4.4e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MSRQNNNGAESVAITIDTTDDTGHEKNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTN 60
          MSRQNNNGAESVAITIDTTDDTGHEKNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTN
Sbjct: 1  MSRQNNNGAESVAITIDTTDDTGHEKNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTN 60

Query: 61 PPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFL 95
          PPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFL
Sbjct: 61 PPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFL 94

[Close]
BLAST of CSPI06G19190 vs. NCBI nr
Match: gi|659089597|ref|XP_008445596.1| (PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 3.6e-41
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1 

Query: 1  MSRQNNNGAESVAITIDTTDDTGHEKNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTN 60
          MSRQNN GAESVAITIDTT+ TGHEKNKMMNNNNW+REDTDFLMVVTTFIATVAFQIGTN
Sbjct: 1  MSRQNN-GAESVAITIDTTE-TGHEKNKMMNNNNWIREDTDFLMVVTTFIATVAFQIGTN 60

Query: 61 PPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFL 95
          PPGGVWQEDDKQGKYFAGKSIMATKSPSDF G+L
Sbjct: 61 PPGGVWQEDDKQGKYFAGKSIMATKSPSDFSGYL 92

[Close]
BLAST of CSPI06G19190 vs. NCBI nr
Match: gi|659089463|ref|XP_008445521.1| (PREDICTED: uncharacterized protein LOC103488512 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 1 

Query: 1  MSRQNNNGAESVAITIDTTDDTGHEKNKMMNNNNWMRE-DTDFLMVVTTFIATVAFQIGT 60
          MS+      E+  + IDT  +T + K+    N+ WMR  D DF+M+V TFIA VAFQ+GT
Sbjct: 1  MSKAGAKNEEATVVAIDT--ETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGT 60

Query: 61 NPPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFL 95
          NPPG VWQE DK G + AGKSIMA+KSPS++  F+
Sbjct: 61 NPPGSVWQE-DKNG-FTAGKSIMASKSPSEYKKFM 91

[Close]
BLAST of CSPI06G19190 vs. NCBI nr
Match: gi|449452915|ref|XP_004144204.1| (PREDICTED: uncharacterized protein LOC101208403 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-15
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 

Query: 1  MSRQNNNGAESVAITIDTTDDTGHEKNKMMNNNNWMRE-DTDFLMVVTTFIATVAFQIGT 60
          MS+      E+  ++IDT  +  ++K++   N+ WM+  D DF+MVV TFIA VAFQ+G 
Sbjct: 1  MSKAGAKNEEATVVSIDTASE--NKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGI 60

Query: 61 NPPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFL 95
          NPPG VWQE DK G + AGKSIMA+KSPS++  F+
Sbjct: 61 NPPGSVWQE-DKNG-FTAGKSIMASKSPSEYKKFM 91

[Close]
BLAST of CSPI06G19190 vs. NCBI nr
Match: gi|659089467|ref|XP_008445524.1| (PREDICTED: uncharacterized protein LOC103488514 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 7.8e-12
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 1 

Query: 26  KNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTNPPGGVWQEDDKQGKYFAGKSIMATK 85
           +N+  +  +W + D + LMV+ TFI T++FQ GTNPPGGVWQ+  +     AGKSIMA+K
Sbjct: 16  ENQTSSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQDGSE-----AGKSIMASK 75

Query: 86  SPSDFIGFLPWLSKPGRILQAA 108
           +PS F+ F+  +S    +L AA
Sbjct: 76  NPSQFLVFIVGVS-TAMVLSAA 91

The following BLAST results are available for this feature:
BLAST of CSPI06G19190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G19190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGU1_CUCSA3.0e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363530 PE=4 SV=1[more]
A0A0A0KIL3_CUCSA4.0e-1550.53Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363520 PE=4 SV=1[more]
A0A0A0KFJ5_CUCSA6.0e-1146.34Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363010 PE=4 SV=1[more]
A0A103XMP5_CYNCS2.8e-0844.87Ankyrin repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_00... [more]
A0A103XBQ4_CYNCS2.8e-0846.15Ankyrin repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_02... [more]
BLAST of CSPI06G19190 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G19190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778715279|ref|XP_011657373.1|4.4e-47100.00PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus][more]
gi|659089597|ref|XP_008445596.1|3.6e-4193.62PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo][more]
gi|659089463|ref|XP_008445521.1|2.0e-1552.63PREDICTED: uncharacterized protein LOC103488512 [Cucumis melo][more]
gi|449452915|ref|XP_004144204.1|5.7e-1550.53PREDICTED: uncharacterized protein LOC101208403 [Cucumis sativus][more]
gi|659089467|ref|XP_008445524.1|7.8e-1246.34PREDICTED: uncharacterized protein LOC103488514 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026961PGG_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G19190.1CSPI06G19190.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026961PGG domainPFAMPF13962PGGcoord: 34..94
score: 1.6
NoneNo IPR availablePANTHERPTHR24177FAMILY NOT NAMEDcoord: 25..94
score: 2.2
NoneNo IPR availablePANTHERPTHR24177:SF17SUBFAMILY NOT NAMEDcoord: 25..94
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G19190Wax gourdcpiwgoB592
CSPI06G19190Cucumber (Gy14) v1cgycpiB042
CSPI06G19190Cucurbita maxima (Rimu)cmacpiB198
CSPI06G19190Cucurbita maxima (Rimu)cmacpiB816
CSPI06G19190Cucurbita moschata (Rifu)cmocpiB183
CSPI06G19190Cucurbita moschata (Rifu)cmocpiB800
CSPI06G19190Cucumber (Chinese Long) v2cpicuB313
CSPI06G19190Melon (DHL92) v3.5.1cpimeB464
CSPI06G19190Watermelon (Charleston Gray)cpiwcgB522
CSPI06G19190Watermelon (97103) v1cpiwmB471
CSPI06G19190Cucurbita pepo (Zucchini)cpecpiB117
CSPI06G19190Cucurbita pepo (Zucchini)cpecpiB844
CSPI06G19190Bottle gourd (USVL1VR-Ls)cpilsiB478
CSPI06G19190Melon (DHL92) v3.6.1cpimedB456
CSPI06G19190Cucumber (Gy14) v2cgybcpiB287
CSPI06G19190Silver-seed gourdcarcpiB0163
CSPI06G19190Silver-seed gourdcarcpiB0733
CSPI06G19190Cucumber (Chinese Long) v3cpicucB363
CSPI06G19190Watermelon (97103) v2cpiwmbB513