CSPI06G19180 (gene) Wild cucumber (PI 183967)

NameCSPI06G19180
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionAnkyrin repeat family protein
LocationChr6 : 17371273 .. 17372327 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTGAGTGGTGCATTGCATTATGTACTGTCTTGTGGCTGCTAAGAGGAGATAGTTCCTGGCATCTTCCATTGGACTTCATTACTTCATTACTTCATCAAAATCATAAAGCCACTGCCCTATAAATATAAGCATATGAGAAGGGGTTTTTGTAAATTGTAATTCATAAGAAGTCTTTACAAGTAATATAATCATAATGTCAAAAGCAGGGGCAAAGAATGAAGAGGCAACAGTAGTATCTATAGATACTGCAAGTGAAAATAAAAGGGATAGAGAAGAGAAGAACAGTGGTTGGATGAAACCAGGAGATGTGGATTTTGTAATGGTAAGTCCTTCAATTTCTCTGCTCTTTTTGTTTCTCCCTCTGGCCTCTATCCGTTATTAGTGGTTGGATGGAGCTTTCATTACTGTTTCATTTTCTTTTGCTCACCTTATTATTTGTCAATTTCACGACAGGTTGTCGTAACATTCATCGCAGCCGTGGCATTCCAAGTAGGAATAAACCCACCGGGCAGTGTATGGCAGGAGGACAAGAATGGTTTTACTGCAGGTAAATCAATAATGGCATCAAAATCACCTTCGGAATACAAGAAATTCATGGCGGGAGTGACACTATGTCTTGGATTTTCATTGATCCAGTTATGTGTGATGTTATTCAGATGGTATCTCAAAAGTTATTCAGTTAGGAGAATGATTATGTACATACTGATGCTGTGTACAATAGCGCCAATGATTGTTTCGTTTTGGGCCTCTGTTAAAGCTTTGACACCTGATGAAAAACTAATGTCTGAGATCACTGCTACCATATGGTCTATTTTGGGAGTCTATCTTATAAGTCTCCCAATTATTCTTCTATACTACCTAGTCAAGACGTTCTTGTGAGTTATATCATTTTCCTAATGTTTTATCTTCTATTAATTTCTTTAATTCATAAAAAAAATCATTGTAATTTGTTTAATTTTCTTTTGTAAGTTTTGAGTTAATAAACTTCAATTGAGATTTGTTATTTGGTTTCTAATAGTTAACTGTACTCTCCCTTTGCATGGTATGGTGGAC

mRNA sequence

ATGTCAAAAGCAGGGGCAAAGAATGAAGAGGCAACAGTAGTATCTATAGATACTGCAAGTGAAAATAAAAGGGATAGAGAAGAGAAGAACAGTGGTTGGATGAAACCAGGAGATGTGGATTTTGTAATGGTTGTCGTAACATTCATCGCAGCCGTGGCATTCCAAGTAGGAATAAACCCACCGGGCAGTGTATGGCAGGAGGACAAGAATGGTTTTACTGCAGGTAAATCAATAATGGCATCAAAATCACCTTCGGAATACAAGAAATTCATGGCGGGAGTGACACTATGTCTTGGATTTTCATTGATCCAGTTATGTGTGATGTTATTCAGATGGTATCTCAAAAGTTATTCAGTTAGGAGAATGATTATGTACATACTGATGCTGTGTACAATAGCGCCAATGATTGTTTCGTTTTGGGCCTCTGTTAAAGCTTTGACACCTGATGAAAAACTAATGTCTGAGATCACTGCTACCATATGGTCTATTTTGGGAGTCTATCTTATAAGTCTCCCAATTATTCTTCTATACTACCTAGTCAAGACGTTCTTGTGA

Coding sequence (CDS)

ATGTCAAAAGCAGGGGCAAAGAATGAAGAGGCAACAGTAGTATCTATAGATACTGCAAGTGAAAATAAAAGGGATAGAGAAGAGAAGAACAGTGGTTGGATGAAACCAGGAGATGTGGATTTTGTAATGGTTGTCGTAACATTCATCGCAGCCGTGGCATTCCAAGTAGGAATAAACCCACCGGGCAGTGTATGGCAGGAGGACAAGAATGGTTTTACTGCAGGTAAATCAATAATGGCATCAAAATCACCTTCGGAATACAAGAAATTCATGGCGGGAGTGACACTATGTCTTGGATTTTCATTGATCCAGTTATGTGTGATGTTATTCAGATGGTATCTCAAAAGTTATTCAGTTAGGAGAATGATTATGTACATACTGATGCTGTGTACAATAGCGCCAATGATTGTTTCGTTTTGGGCCTCTGTTAAAGCTTTGACACCTGATGAAAAACTAATGTCTGAGATCACTGCTACCATATGGTCTATTTTGGGAGTCTATCTTATAAGTCTCCCAATTATTCTTCTATACTACCTAGTCAAGACGTTCTTGTGA
BLAST of CSPI06G19180 vs. TrEMBL
Match: A0A0A0KIL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363520 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.2e-93
Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 1

Query: 1   MSKAGAKNEEATVVSIDTASENKRDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINP 60
           MSKAGAKNEEATVVSIDTASENK+DREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINP
Sbjct: 1   MSKAGAKNEEATVVSIDTASENKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINP 60

Query: 61  PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVR 120
           PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVR
Sbjct: 61  PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVR 120

Query: 121 RMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLV 180
           RMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLV
Sbjct: 121 RMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLV 180

Query: 181 KTFL 185
           KTFL
Sbjct: 181 KTFL 184

BLAST of CSPI06G19180 vs. TrEMBL
Match: A0A0A0KGU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363530 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.7e-22
Identity = 75/184 (40.76%), Postives = 112/184 (60.87%), Query Frame = 1

Query: 1   MSKAGAKNEEATVVSIDTASENKRDREE--KNSGWMKPGDVDFVMVVVTFIAAVAFQVGI 60
           MS+      E+  ++IDT  +   ++ +   N+ WM+  D DF+MVV TFIA VAFQ+G 
Sbjct: 1   MSRQNNNGAESVAITIDTTDDTGHEKNKMMNNNNWMRE-DTDFLMVVTTFIATVAFQIGT 60

Query: 61  NPPGSVWQE-DKNG-FTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVM-LFRWYL- 120
           NPPG VWQE DK G + AGKSIMA+KSPS++  F+  +T C  FS +Q  V+ L +W + 
Sbjct: 61  NPPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFLVTITACFVFSAMQFAVLFLKKWPVG 120

Query: 121 -KSYSVRRMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPI 178
            K++S  R I+Y  M   ++ M  ++  SV+A TPD +  +    +  ++LG + ISL  
Sbjct: 121 AKNWSFSRFILYSTMGLAVSSMGFAYGCSVRAYTPDSEENTLFVISFITMLG-FPISLAA 180

BLAST of CSPI06G19180 vs. TrEMBL
Match: A0A0A0KFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363010 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.7e-14
Identity = 59/174 (33.91%), Postives = 98/174 (56.32%), Query Frame = 1

Query: 2   SKAGAKNEEATVVSIDTASENKRDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINPP 61
           S+     E AT+     A+EN+   E+     ++  D++ +MV++TFI  ++FQ G NPP
Sbjct: 3   SRVEEDQETATI-----AAENQTSSEKT----LQKADIELLMVIITFIGTISFQAGTNPP 62

Query: 62  GSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVRR 121
           G VWQE   G  AGKSIMASK+PS++  F+ GVT+ +  S  QL  ++        S  R
Sbjct: 63  GGVWQE---GPEAGKSIMASKNPSQFVVFIVGVTVGMVLSAAQLLTLMNELPYNKLSDSR 122

Query: 122 MIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIIL 176
             +Y  +  TI  +  ++W+S+ ALTP   ++ E+   + + L + ++ + II+
Sbjct: 123 NFIYCSLGITITALGFAYWSSLTALTPSSMIL-EVRIVLITELSIGVVIVAIIV 163

BLAST of CSPI06G19180 vs. TrEMBL
Match: A0A0D2U128_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G109800 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-09
Identity = 45/119 (37.82%), Postives = 74/119 (62.18%), Query Frame = 1

Query: 35  KPGDVDFVMVVV-TFIAAVAFQVGINPPGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAG 94
           KPGDV  +M+VV T IA+V FQ G+NPPG VWQ++ NG  AG++I AS+S + Y  F+  
Sbjct: 23  KPGDVRNIMLVVATLIASVTFQAGVNPPGGVWQDNDNGHHAGRAIYASQS-AAYYVFLIS 82

Query: 95  VTLCLGFSLIQLCVMLFRWYLKSYSVRRMIMYILMLCTIAPMIVSFWASVKALTPDEKL 153
            T  L  S++ +  +  R+            + +++ T++ MIV++ +++ A+TPDE +
Sbjct: 83  NTFALSASILVIISLTHRF---------PFHFEIIIATVS-MIVTYGSAIFAVTPDESV 130

BLAST of CSPI06G19180 vs. TrEMBL
Match: A0A061E2M2_THECC (Ankyrin repeat family protein OS=Theobroma cacao GN=TCM_005770 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 42/124 (33.87%), Postives = 74/124 (59.68%), Query Frame = 1

Query: 30  NSGWMKPGDVDFVMVVV-TFIAAVAFQVGINPPGSVWQEDKNGFTAGKSIMASKSPSEYK 89
           + G  KP D+  VM++V T IAAV FQ G++PPG VWQ+ ++G  AG++I AS++P+ Y 
Sbjct: 160 DEGRDKPSDLRNVMLIVATLIAAVTFQAGVSPPGGVWQDSEHGHVAGRAIYASQAPA-YY 219

Query: 90  KFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVRRMIMYILMLCTIAPMIVSFWASVKALTP 149
            F+   TL L  S++ +  + +R+            ++ ++     M+V++ ++V A+TP
Sbjct: 220 VFLIANTLALSASILVIISLTYRF----------PFHLEVIVATISMMVTYGSAVFAVTP 272

Query: 150 DEKL 153
            E +
Sbjct: 280 HESV 272

BLAST of CSPI06G19180 vs. NCBI nr
Match: gi|449452915|ref|XP_004144204.1| (PREDICTED: uncharacterized protein LOC101208403 [Cucumis sativus])

HSP 1 Score: 350.5 bits (898), Expect = 1.8e-93
Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 1

Query: 1   MSKAGAKNEEATVVSIDTASENKRDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINP 60
           MSKAGAKNEEATVVSIDTASENK+DREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINP
Sbjct: 1   MSKAGAKNEEATVVSIDTASENKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINP 60

Query: 61  PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVR 120
           PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVR
Sbjct: 61  PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVR 120

Query: 121 RMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLV 180
           RMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLV
Sbjct: 121 RMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLV 180

Query: 181 KTFL 185
           KTFL
Sbjct: 181 KTFL 184

BLAST of CSPI06G19180 vs. NCBI nr
Match: gi|659089463|ref|XP_008445521.1| (PREDICTED: uncharacterized protein LOC103488512 [Cucumis melo])

HSP 1 Score: 315.8 bits (808), Expect = 4.8e-83
Identity = 161/184 (87.50%), Postives = 174/184 (94.57%), Query Frame = 1

Query: 1   MSKAGAKNEEATVVSIDTASENKRDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINP 60
           MSKAGAKNEEATVV+IDT +EN++D EE NSGWM+PGDVDFVM+VVTFIAAVAFQVG NP
Sbjct: 1   MSKAGAKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNP 60

Query: 61  PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVR 120
           PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCL FSLIQL VMLFRWYLK+YSVR
Sbjct: 61  PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVR 120

Query: 121 RMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLV 180
           RMIMY+LM+CTIAPMI SFWASVKALTPDEK+MSEITATIWS  GVYL+SLP+ILLYYL+
Sbjct: 121 RMIMYLLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLL 180

Query: 181 KTFL 185
           K FL
Sbjct: 181 KKFL 184

BLAST of CSPI06G19180 vs. NCBI nr
Match: gi|778715279|ref|XP_011657373.1| (PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 75/184 (40.76%), Postives = 112/184 (60.87%), Query Frame = 1

Query: 1   MSKAGAKNEEATVVSIDTASENKRDREE--KNSGWMKPGDVDFVMVVVTFIAAVAFQVGI 60
           MS+      E+  ++IDT  +   ++ +   N+ WM+  D DF+MVV TFIA VAFQ+G 
Sbjct: 1   MSRQNNNGAESVAITIDTTDDTGHEKNKMMNNNNWMRE-DTDFLMVVTTFIATVAFQIGT 60

Query: 61  NPPGSVWQE-DKNG-FTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVM-LFRWYL- 120
           NPPG VWQE DK G + AGKSIMA+KSPS++  F+  +T C  FS +Q  V+ L +W + 
Sbjct: 61  NPPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFLVTITACFVFSAMQFAVLFLKKWPVG 120

Query: 121 -KSYSVRRMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPI 178
            K++S  R I+Y  M   ++ M  ++  SV+A TPD +  +    +  ++LG + ISL  
Sbjct: 121 AKNWSFSRFILYSTMGLAVSSMGFAYGCSVRAYTPDSEENTLFVISFITMLG-FPISLAA 180

BLAST of CSPI06G19180 vs. NCBI nr
Match: gi|659089597|ref|XP_008445596.1| (PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 3.1e-21
Identity = 72/174 (41.38%), Postives = 110/174 (63.22%), Query Frame = 1

Query: 10  EATVVSIDTASE-NKRDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINPPGSVWQE- 69
           E+  ++IDT    +++++   N+ W++  D DF+MVV TFIA VAFQ+G NPPG VWQE 
Sbjct: 9   ESVAITIDTTETGHEKNKMMNNNNWIRE-DTDFLMVVTTFIATVAFQIGTNPPGGVWQED 68

Query: 70  DKNG-FTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVM-LFRWYL--KSYSVRRMI 129
           DK G + AGKSIMA+KSPS++  ++  +T C  FS +Q  V+ L +W +  K++S  R I
Sbjct: 69  DKQGKYFAGKSIMATKSPSDFSGYLVTITACFVFSAMQFAVLFLKKWPVGAKNWSFSRFI 128

Query: 130 MYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLY 178
           +Y  M   I+ M +++  SV+A TPD +  +    +  ++LG + I L  I LY
Sbjct: 129 LYSTMGLAISSMGIAYGCSVRAYTPDSEEKTRYVISFITMLG-FPIGLAAISLY 180

BLAST of CSPI06G19180 vs. NCBI nr
Match: gi|449452917|ref|XP_004144205.1| (PREDICTED: uncharacterized protein LOC101208645 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 8.2e-14
Identity = 59/174 (33.91%), Postives = 98/174 (56.32%), Query Frame = 1

Query: 2   SKAGAKNEEATVVSIDTASENKRDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINPP 61
           S+     E AT+     A+EN+   E+     ++  D++ +MV++TFI  ++FQ G NPP
Sbjct: 3   SRVEEDQETATI-----AAENQTSSEKT----LQKADIELLMVIITFIGTISFQAGTNPP 62

Query: 62  GSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVRR 121
           G VWQE   G  AGKSIMASK+PS++  F+ GVT+ +  S  QL  ++        S  R
Sbjct: 63  GGVWQE---GPEAGKSIMASKNPSQFVVFIVGVTVGMVLSAAQLLTLMNELPYNKLSDSR 122

Query: 122 MIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIIL 176
             +Y  +  TI  +  ++W+S+ ALTP   ++ E+   + + L + ++ + II+
Sbjct: 123 NFIYCSLGITITALGFAYWSSLTALTPSSMIL-EVRIVLITELSIGVVIVAIIV 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KIL3_CUCSA1.2e-9399.46Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363520 PE=4 SV=1[more]
A0A0A0KGU1_CUCSA9.7e-2240.76Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363530 PE=4 SV=1[more]
A0A0A0KFJ5_CUCSA5.7e-1433.91Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363010 PE=4 SV=1[more]
A0A0D2U128_GOSRA1.9e-0937.82Uncharacterized protein OS=Gossypium raimondii GN=B456_008G109800 PE=4 SV=1[more]
A0A061E2M2_THECC1.2e-0833.87Ankyrin repeat family protein OS=Theobroma cacao GN=TCM_005770 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449452915|ref|XP_004144204.1|1.8e-9399.46PREDICTED: uncharacterized protein LOC101208403 [Cucumis sativus][more]
gi|659089463|ref|XP_008445521.1|4.8e-8387.50PREDICTED: uncharacterized protein LOC103488512 [Cucumis melo][more]
gi|778715279|ref|XP_011657373.1|1.4e-2140.76PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus][more]
gi|659089597|ref|XP_008445596.1|3.1e-2141.38PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo][more]
gi|449452917|ref|XP_004144205.1|8.2e-1433.91PREDICTED: uncharacterized protein LOC101208645 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026961PGG_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G19180.1CSPI06G19180.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026961PGG domainPFAMPF13962PGGcoord: 40..143
score: 2.3
NoneNo IPR availablePANTHERPTHR24177FAMILY NOT NAMEDcoord: 1..183
score: 1.1
NoneNo IPR availablePANTHERPTHR24177:SF17SUBFAMILY NOT NAMEDcoord: 1..183
score: 1.1

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G19180MELO3C011475Melon (DHL92) v3.5.1cpimeB464
CSPI06G19180ClCG08G009950Watermelon (Charleston Gray)cpiwcgB522
CSPI06G19180MELO3C011475.2Melon (DHL92) v3.6.1cpimedB456
CSPI06G19180Bhi04G001174Wax gourdcpiwgoB592
The following gene(s) are paralogous to this gene:

None