CSPI06G18710 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G18710
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 16971156 .. 16971490 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGGAAAACAGAAGAAGAAGAAGAAGAGGAAGAAGATGAAGATGAAGATGAAGATGAAGAAGAAGAAGAAGACGAGGGAAGAAAAAAAAAAAAAGATGGAATTTGGTGCACGTTCAACGGTCTTGATTTTGCAGGCTTTTACAACAATCATCCCCAATAGAGAGGATTGATTGTAAGAAACTTCCTGTTACGGAGAATTTGAAGAGTAAAGTGATTGGGCCAACATCTGGTTGGTTGCACAAATTCAATCCGACATCATTCATCCATATGCCAAAACCAAAACACAACTGCTTTTGTGGATCTCCCCTGCCTTCTGCGTTTTTGCCTTAA

mRNA sequence

ATGAAATGGAAAACAGAAGAAGAAGAAGAAGAGGAAGAAGATGAAGATGAAGATGAAGATGAAGAAGAAGAAGAAGACGAGGGAAGAAAAAAAAAAAAAGATGGAATTTGGCTTTTACAACAATCATCCCCAATAGAGAGGATTGATTGTAAGAAACTTCCTGTTACGGAGAATTTGAAGAGTAAAGTGATTGGGCCAACATCTGGTTGGTTGCACAAATTCAATCCGACATCATTCATCCATATGCCAAAACCAAAACACAACTGCTTTTGTGGATCTCCCCTGCCTTCTGCGTTTTTGCCTTAA

Coding sequence (CDS)

ATGAAATGGAAAACAGAAGAAGAAGAAGAAGAGGAAGAAGATGAAGATGAAGATGAAGATGAAGAAGAAGAAGAAGACGAGGGAAGAAAAAAAAAAAAAGATGGAATTTGGCTTTTACAACAATCATCCCCAATAGAGAGGATTGATTGTAAGAAACTTCCTGTTACGGAGAATTTGAAGAGTAAAGTGATTGGGCCAACATCTGGTTGGTTGCACAAATTCAATCCGACATCATTCATCCATATGCCAAAACCAAAACACAACTGCTTTTGTGGATCTCCCCTGCCTTCTGCGTTTTTGCCTTAA
Homology
[Close]
BLAST of CSPI06G18710 vs. TrEMBL
Match: A0A0A0KDH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G358070 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-30
Identity = 72/98 (73.47%), Postives = 89/98 (90.82%), Query Frame = 1 

Query: 4   KTEEEEEEEEDEDEDEDEEEEEDEGRKKKKDGIWLLQQSSPIERIDCKKLPVTENLKSKV 63
           K ++++++++ + + + +++++    KK+KDGIWLLQQSSPIERIDCKKLPVTENLKSKV
Sbjct: 31  KQKKKKKKKKKKKKKKKKKKKKKREEKKRKDGIWLLQQSSPIERIDCKKLPVTENLKSKV 90

Query: 64  IGPTSGWLHKFNPTSFIHMPKPKHNCFCGSPLPSAFLP 102
           IGPTSGWLHKFNPTSFIHMPKPKHNCFCGSPLPSAFLP
Sbjct: 91  IGPTSGWLHKFNPTSFIHMPKPKHNCFCGSPLPSAFLP 128

[Close]
BLAST of CSPI06G18710 vs. NCBI nr
Match: gi|700192339|gb|KGN47543.1| (hypothetical protein Csa_6G358070 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 5.8e-30
Identity = 72/98 (73.47%), Postives = 89/98 (90.82%), Query Frame = 1 

Query: 4   KTEEEEEEEEDEDEDEDEEEEEDEGRKKKKDGIWLLQQSSPIERIDCKKLPVTENLKSKV 63
           K ++++++++ + + + +++++    KK+KDGIWLLQQSSPIERIDCKKLPVTENLKSKV
Sbjct: 31  KQKKKKKKKKKKKKKKKKKKKKKREEKKRKDGIWLLQQSSPIERIDCKKLPVTENLKSKV 90

Query: 64  IGPTSGWLHKFNPTSFIHMPKPKHNCFCGSPLPSAFLP 102
           IGPTSGWLHKFNPTSFIHMPKPKHNCFCGSPLPSAFLP
Sbjct: 91  IGPTSGWLHKFNPTSFIHMPKPKHNCFCGSPLPSAFLP 128

The following BLAST results are available for this feature:
BLAST of CSPI06G18710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G18710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDH0_CUCSA4.1e-3073.47Uncharacterized protein OS=Cucumis sativus GN=Csa_6G358070 PE=4 SV=1[more]
BLAST of CSPI06G18710 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G18710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192339|gb|KGN47543.1|5.8e-3073.47hypothetical protein Csa_6G358070 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G18710.1CSPI06G18710.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 4..27
scor