CSPI06G18410 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G18410
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein LINE-1
Location	Chr6 : 16786091 .. 16787781 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTATCTCAGTATACTTCTCAATCACTTGGAGAAAAAAAACTTGATAAAAGGAGTTAGTTTCAATGGAAAACATAACCTTACTCATCTCCTCTTTGCTGCTGATATCCTTCTTTTTATGGAGGACGATGAAGAAACCATTAATAATATGAGGAATGCCCTTCGGCTTTTTGAATTGGCCTCAGGTCTCAACATCAACCTCAACAAATCCACGATCTCTCCTATCAACATTGATACACAGAGAACAAATTATGTGGCGGCTAAATGGGGCTTCTCAGTTAATTTCCTACCTATCCAATATTTGGGAGTGCCTTTGGGCGGTAAACCGAATCCTAGACATTTTTGGTCTGAAACAACGGAAAAACTCCAAAGAAAAATCAACAACTGGAAATATGCTTCTCTTTCCAAAGGTGGCAAGATAACTCTCATTAAAGCTACATTAGCTAGCTTTCCTAATTATCACATTTTGGTTTTCAAGCCCCCCAAATATGTCTACAAAGATATTAAAACAATATGGAGAAATTTCCTCTGGAGAAACACCTTTGATAAGAAAAACATCAATCTCATCAAATGGTCAACGATGTTGTCTCCTATCAACAAAGGTGGCCTGGGCATTAACAACATTCAAAGTACAAATTTCGCTCTACTAAGCAAGTGGATTTGGAGATTTTATGAAGAAAAAATTCTCTACGGAAACGCATAATCACTGCTAAATATGAACAATCATACTTGGGTGAACTTCCAATCAAAAGCAAATATAGCAGCTCCAAAGCACCTTGGATGTCTATCATTAAAGGAGCTGACTGGGTCCTTCCTCAAATCAAATGGTCTATTAAAAGGGGAGACTCCCTCTCGTTCTGGCACAGCCGATGGCATGAACTTAGTCCATTCGCATAGACCAACCTAAGATTATTTGCTCTTTCTACCAGGAAAGGAGACTCCATTGCAAACATGTGGAATGCAGAAAAAGCCGACAGGGACCTCTACCCTCAAAAACCGTTAAGAAGTGTCAAGGAAGTTCTTTGGGAATATATGAAAGCCTCCCTCCCTCCCTTGCCTGATTCAGGAGTTGACAATCATCGTTGGATTTTGAACAACAATGGCAGCTTCACTGTGGCTTCCATCAAACTTGCAAGACCTCTAAACAACCAAGACGAGACCAACGAAGATGATGGGAAAATCTATAACAACTTATGGAAATCTACCATCCCCAAAAGATGCAAATTCTTCGTATGGACTCTCCTACATGAGTGTATCAATACAATGGATATGCTGCAGAGAAGACTTTCAACGTGAACTATAAAGCCCTCTTGGTGCATCCTCTGCAAAGCTGCTGAGGAAGACAGACAACATCTTTTCGCCCATTGCCCCTTCACAACATTGCTCTGGAAGAAAGTTGAAGTTATCCTGGGCAAACCCCTGCTCTTTCCAAATTCCACTGCCTTATGCAAAGATCTCTTCAAAACAAAAGGTAAAACAAAAAAGCAAATCATCAATCAACACCTGGTGGCTACTACCCTTTGGAACATTTGGAATGAAAATAACAGAAGGATTTTTAAGGAGGAAGAAAAAAAAGTTGATTCCGTATGGGAAGACATACAAGCCATAACGGGTTTTTGGACAAGCCGATCTTCCCTCTTCAAAAATTACTCGACTAGCTCTATTCCATTAAACTTAAATGCTTTTTAG

mRNA sequence

ATGGATTATCTCAGTATACTTCTCAATCACTTGGAGAAAAAAAACTTGATAAAAGGAGTTAGTTTCAATGGAAAACATAACCTTACTCATCTCCTCTTTGCTGCTGATATCCTTCTTTTTATGGAGGACGATGAAGAAACCATTAATAATATGAGGAATGCCCTTCGGCTTTTTGAATTGGCCTCAGGTCTCAACATCAACCTCAACAAATCCACGATCTCTCCTATCAACATTGATACACAGAGAACAAATTATGTGGCGGCTAAATGGGGCTTCTCAGTTAATTTCCTACCTATCCAATATTTGGGAGTGCCTTTGGGCGGTAAACCGAATCCTAGACATTTTTGGTCTGAAACAACGGAAAAACTCCAAAGAAAAATCAACAACTGGAAATATGCTTCTCTTTCCAAAGGTGGCAAGATAACTCTCATTAAAGCTACATTAGCTAGCTTTCCTAATTATCACATTTTGGTTTTCAAGCCCCCCAAATATGTCTACAAAGATATTAAAACAATATGGAGAAATTTCCTCTGGAGAAACACCTTTGATAAGAAAAACATCAATCTCATCAAATGGTCAACGATGTTGTCTCCTATCAACAAAGGTGGCCTGGGCATTAACAACATTCAAAGTACAAATTTCGCTCTACTAAGCAAGAAAGGAGACTCCATTGCAAACATGTGGAATGCAGAAAAAGCCGACAGGGACCTCTACCCTCAAAAACCGTTAAGAAGTGTCAAGGAAGTTCTTTGGGAATATATGAAAGCCTCCCTCCCTCCCTTGCCTGATTCAGGAGTTGACAATCATCGTTGGATTTTGAACAACAATGGCAGCTTCACTGTGGCTTCCATCAAACTTGCAAGACCTCTAAACAACCAAGACGAGACCAACGAAGATGATGGGAAAATCTATAACAACTTATGGAAATCTACCATCCCCAAAAGATGCAAATTCTTCCCCTCTTGGTGCATCCTCTGCAAAGCTGCTGAGGAAGACAGACAACATCTTTTCGCCCATTGCCCCTTCACAACATTGCTCTGGAAGAAAGTTGAAGTTATCCTGGGCAAACCCCTGCTCTTTCCAAATTCCACTGCCTTATGCAAAGATCTCTTCAAAACAAAAGGTAAAACAAAAAAGCAAATCATCAATCAACACCTGGTGGCTACTACCCTTTGGAACATTTGGAATGAAAATAACAGAAGGATTTTTAAGGAGGAAGAAAAAAAAGTTGATTCCGTATGGGAAGACATACAAGCCATAACGGGTTTTTGGACAAGCCGATCTTCCCTCTTCAAAAATTACTCGACTAGCTCTATTCCATTAAACTTAAATGCTTTTTAG

Coding sequence (CDS)

ATGGATTATCTCAGTATACTTCTCAATCACTTGGAGAAAAAAAACTTGATAAAAGGAGTTAGTTTCAATGGAAAACATAACCTTACTCATCTCCTCTTTGCTGCTGATATCCTTCTTTTTATGGAGGACGATGAAGAAACCATTAATAATATGAGGAATGCCCTTCGGCTTTTTGAATTGGCCTCAGGTCTCAACATCAACCTCAACAAATCCACGATCTCTCCTATCAACATTGATACACAGAGAACAAATTATGTGGCGGCTAAATGGGGCTTCTCAGTTAATTTCCTACCTATCCAATATTTGGGAGTGCCTTTGGGCGGTAAACCGAATCCTAGACATTTTTGGTCTGAAACAACGGAAAAACTCCAAAGAAAAATCAACAACTGGAAATATGCTTCTCTTTCCAAAGGTGGCAAGATAACTCTCATTAAAGCTACATTAGCTAGCTTTCCTAATTATCACATTTTGGTTTTCAAGCCCCCCAAATATGTCTACAAAGATATTAAAACAATATGGAGAAATTTCCTCTGGAGAAACACCTTTGATAAGAAAAACATCAATCTCATCAAATGGTCAACGATGTTGTCTCCTATCAACAAAGGTGGCCTGGGCATTAACAACATTCAAAGTACAAATTTCGCTCTACTAAGCAAGAAAGGAGACTCCATTGCAAACATGTGGAATGCAGAAAAAGCCGACAGGGACCTCTACCCTCAAAAACCGTTAAGAAGTGTCAAGGAAGTTCTTTGGGAATATATGAAAGCCTCCCTCCCTCCCTTGCCTGATTCAGGAGTTGACAATCATCGTTGGATTTTGAACAACAATGGCAGCTTCACTGTGGCTTCCATCAAACTTGCAAGACCTCTAAACAACCAAGACGAGACCAACGAAGATGATGGGAAAATCTATAACAACTTATGGAAATCTACCATCCCCAAAAGATGCAAATTCTTCCCCTCTTGGTGCATCCTCTGCAAAGCTGCTGAGGAAGACAGACAACATCTTTTCGCCCATTGCCCCTTCACAACATTGCTCTGGAAGAAAGTTGAAGTTATCCTGGGCAAACCCCTGCTCTTTCCAAATTCCACTGCCTTATGCAAAGATCTCTTCAAAACAAAAGGTAAAACAAAAAAGCAAATCATCAATCAACACCTGGTGGCTACTACCCTTTGGAACATTTGGAATGAAAATAACAGAAGGATTTTTAAGGAGGAAGAAAAAAAAGTTGATTCCGTATGGGAAGACATACAAGCCATAACGGGTTTTTGGACAAGCCGATCTTCCCTCTTCAAAAATTACTCGACTAGCTCTATTCCATTAAACTTAAATGCTTTTTAG

Homology

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BLAST of CSPI06G18410 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.8e-14
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 116 WSETTEKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRN 175
           + E  E++  +++ W+  +LS  G++TL KA L+S P + +     P+ +   +  + R 
Sbjct: 13  FGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRT 72

Query: 176 FLWRNTFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSKKG 222
           FLW +T +KK  +L+KWS + SP  +GGLG+   +S N AL+SK G
Sbjct: 73  FLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVG 118

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BLAST of CSPI06G18410 vs. TrEMBL
Match: A5C3A7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002584 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.7e-44
Identity = 137/492 (27.85%), Postives = 216/492 (43.90%), Query Frame = 1


Query: 2   DYLSILLNHLEKKNLIKGVSFN-GKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 61
           D LS +L   E++N+++G      +  ++HL FA D + F    EE +  ++N L +F  
Sbjct: 352 DVLSRMLLKAEERNVLEGFRVGRNRTRVSHLQFADDTIFFSSTREEDMMTLKNVLLVFGH 411

Query: 62  ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 121
            SGL +NLNKS I  IN++    + +A       +  PI YLG+PLGG P    FW    
Sbjct: 412 ISGLKVNLNKSNIYGINLEQNYLSRLAEMLDCKASGWPILYLGLPLGGNPKACGFWDPMI 471

Query: 122 EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 181
           E++  +++ W+ A LS GG+ITLI++     P Y + +F     V   I+ + R+FLW  
Sbjct: 472 ERISSRLDGWQKAYLSFGGRITLIQSCFTHMPCYFLSLFMISALVAAKIERMQRDFLWSG 531

Query: 182 TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSKKGDSIANMWNAEKADRDLYPQ 241
             + K  +L+ W  +  P ++GGLG   I   N ALL K         +A      +   
Sbjct: 532 VGEGKRDHLVNWDVVCKPKSRGGLGFGKISIRNVALLGKWLWRYPREGSALCISVVMDKN 591

Query: 242 KPLRSV----KEVLWEY----------------MKASLPPLPDSGV--DNHRWILNNNGS 301
            P+ S+    +   W +                +  SL  L  S +  D   W L+  G 
Sbjct: 592 APISSIIGYSRPFSWNFNFRRNLSDSEIEDLEGLMRSLDRLHISPLVPDKRSWSLSPLGL 651

Query: 302 FTVASIKLARPLNNQDETNEDDGKIYNNLWKSTIPKRCKFF------------------- 361
           FTV S  LA  L+   E+       +  +W S +P + K F                   
Sbjct: 652 FTVKSFFLA--LSQYSESPPVFPTKF--VWNSQVPFKVKSFVWLVAHKKVNTNDLLQLRR 711

Query: 362 ------PSWCILCKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPNSTA-LCKDLFK 421
                 P  C LC   EE   HLF HC  T  LW  +  +     +   S + +  + F 
Sbjct: 712 PHKALSPDICKLCMKHEETVDHLFLHCSLTMGLWYILFQLAKTDWVSSRSISDMLSNNFN 771

Query: 422 TKGKTKKQIIN-QHLVATTLWNIWNENNRRIFKEEEKKVDSVWEDIQAITGFWTSRSSLF 444
             G +K+ ++  Q      +W +W E N RIF+++ +  + +W+ I+ +   W   S +F
Sbjct: 772 GFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKVRNSEYLWDSIRFLASLWAFCSKVF 831

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BLAST of CSPI06G18410 vs. TrEMBL
Match: A5AD48_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026527 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.5e-39
Identity = 132/496 (26.61%), Postives = 213/496 (42.94%), Query Frame = 1


Query: 2    DYLSILLNHLEKKNLIKGVSFN-GKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 61
            D LS +L   E++N+++G      K  ++HL FA D + F    EE +  +++ L +F  
Sbjct: 654  DVLSRMLMRAEERNMMEGFRVGRNKTRVSHLQFADDTIFFSNSREEELQTLKSLLLVFGH 713

Query: 62   ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 121
             SGL +NLNKS+I  IN+D    + +A       +  PI YL +PLGG P    FW    
Sbjct: 714  ISGLKVNLNKSSIYGINLDQAHLSRLAEMLDCKASGWPILYLSLPLGGNPKACGFWDPVV 773

Query: 122  EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 181
            E++  +++ W+   LS GG+ITLI++ L   P+Y + +FK P  V   I+ I R+FLW  
Sbjct: 774  ERISSRLDGWQKPYLSFGGRITLIQSCLTHLPSYFLSLFKIPALVAAKIERIQRDFLWSR 833

Query: 182  TFDKKNINLIKWSTMLSPINKGGLGINN---------------------IQSTNFALLSK 241
             + ++  +  +    +   +  G G                        +   N ++ S 
Sbjct: 834  GWGRQKGSFSEVGCCVQTKDNRGFGFGEYFLEESRSSREMVMEPRLFRVVVDKNISISSV 893

Query: 242  KGDSIANMWN----AEKADRDLYPQKPL-RSVKEVLWEYMKASLPPLPDSGVDNHRWILN 301
             G S   +WN       +D ++   + L RS+ ++   Y+  S+P       D   W L+
Sbjct: 894  LGPSRPFLWNLNFRRNLSDSEIEDLEGLMRSLDDL---YLSPSVP-------DARLWPLS 953

Query: 302  NNGSFTVASIKLARPLNNQDETNEDDGKIYNNLWKSTIPKRCKFF--------------- 361
            ++G F+V S  LA   +     N         +W S +P + K F               
Sbjct: 954  SSGLFSVKSFFLALSQSAGSPQNFPS----KFVWNSQVPFKVKSFVWLVAHKKVNTNDML 1013

Query: 362  ----------PSWCILCKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPNST-ALCK 421
                      P  CILC    E   HLF HC  T  LW ++  +     + P     +  
Sbjct: 1014 QVRRPYKALSPDICILCMKHGESADHLFLHCSVTIGLWHRLFQLAKMDWVPPRCIYDMMS 1073

Query: 422  DLFKTKGKTKKQIINQHLVATTLWN-IWNENNRRIFKEEEKKVDSVWEDIQAITGFWTSR 444
              FK  G +K+ I+     +  L   +W E N RIF+++ +    +W+ I  +   W   
Sbjct: 1074 IKFKGFGNSKRGIVLWQAASIALIRVVWWERNARIFEDKTRNSGFLWDSIVFLASLWAFC 1130

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BLAST of CSPI06G18410 vs. TrEMBL
Match: M5WKV4_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015607mg PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.0e-38
Identity = 85/219 (38.81%), Postives = 130/219 (59.36%), Query Frame = 1


Query: 2   DYLSILLNHLEKKNLIKG-VSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 61
           D LS ++   +  NL+ G VS + +  ++HL FA D +  ++  EE   N+   L+LF  
Sbjct: 396 DVLSRIIERAQDVNLVHGIVSGHDQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCE 455

Query: 62  ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 121
            SG+ IN  KS I  IN  T   N +A  WG  V   P+ YLG+PLGG P   +FW+   
Sbjct: 456 VSGMKINKAKSCILGINFSTDALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVM 515

Query: 122 EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 181
           +K+++++  WK A LSKGG++TLI+A L+S P+Y++ +FK P  V   ++ + RNFLW  
Sbjct: 516 DKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAAKVEQLMRNFLWEG 575

Query: 182 TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSK 220
             D KN +L++W  +     +GGLGI +++  N AL +K
Sbjct: 576 LEDGKNCHLVRWERVTKSKEEGGLGIGSLRERNEALRAK 614

[Close]

BLAST of CSPI06G18410 vs. TrEMBL
Match: M5XHS0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020085mg PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.0e-38
Identity = 85/219 (38.81%), Postives = 130/219 (59.36%), Query Frame = 1


Query: 2   DYLSILLNHLEKKNLIKG-VSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 61
           D LS ++   +  NL+ G VS + +  ++HL FA D +  ++  EE   N+   L+LF  
Sbjct: 632 DVLSRIIERAQDVNLVHGIVSGHDQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCE 691

Query: 62  ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 121
            SG+ IN  KS I  IN  T   N +A  WG  V   P+ YLG+PLGG P   +FW+   
Sbjct: 692 VSGMKINKAKSCILGINFSTDALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVM 751

Query: 122 EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 181
           +K+++++  WK A LSKGG++TLI+A L+S P+Y++ +FK P  V   ++ + RNFLW  
Sbjct: 752 DKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAAKVEQLMRNFLWEG 811

Query: 182 TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSK 220
             D KN +L++W  +     +GGLGI +++  N AL +K
Sbjct: 812 LEDGKNCHLVRWERVTKSKEEGGLGIGSLRERNEALRAK 850

[Close]

BLAST of CSPI06G18410 vs. TrEMBL
Match: M5VS59_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016504mg PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.8e-37
Identity = 84/219 (38.36%), Postives = 131/219 (59.82%), Query Frame = 1


Query: 2   DYLSILLNHLEKKNLIKG-VSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 61
           D LS ++   +  NL+ G VS + +  ++HL FA D +  ++  EE   N+   L+LF  
Sbjct: 640 DVLSRIIERAQDVNLVHGIVSGHDQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCD 699

Query: 62  ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 121
            SG+ IN  KS I  IN  T+  N +A  WG  V   P+ YLG+PLGG P   +FW+   
Sbjct: 700 VSGMKINKAKSCILGINFSTEALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVM 759

Query: 122 EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 181
           +K+++++  WK A LSKGG++TLI+A L+S P+Y++ +FK P  V   ++ + RNFLW  
Sbjct: 760 DKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAAKVEQLMRNFLWEG 819

Query: 182 TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSK 220
             + KN +L++W  +     +GGLGI +++  N AL +K
Sbjct: 820 LEEGKNCHLVRWERVTKSKEEGGLGIGSLRERNEALRAK 858

[Close]

BLAST of CSPI06G18410 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 73.6 bits (179), Expect = 3.6e-13
Identity = 41/142 (28.87%), Postives = 71/142 (50.00%), Query Frame = 1


Query: 92  FSVNFLPIQYLGVPLGGKPNPRHFWSETTEKLQRKINNWKYASLSKGGKITLIKATLASF 151
           F+   LP++YLG+PL  K      +    EK++ +I  W    LS  G++ LI + + S 
Sbjct: 18  FASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSL 77

Query: 152 PNYHILVFKPPKYVYKDIKTIWRNFLWRNTFDKKNINLIKWSTMLSPINKGGLGINNIQS 211
            N+ +  F+ P    K+I +I  +FLW           + WS + +P ++GGLGI +++ 
Sbjct: 78  TNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKE 137

Query: 212 TN-FALLSKKGDSIANMWNAEK 233
            N  +  S  G++    W  +K
Sbjct: 138 ANKGSFWSISGNTTLGSWMWKK 159

[Close]

BLAST of CSPI06G18410 vs. TAIR10
Match: AT1G43730.1 (AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 48.9 bits (115), Expect = 9.4e-06
Identity = 30/101 (29.70%), Postives = 47/101 (46.53%), Query Frame = 1


Query: 320 PSWCILCKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPNSTAL-CKDLFKTKGKTK 379
           P+ C+LC + +E R HLF  CPF   +W+      G+  LFP +  + C        + K
Sbjct: 190 PAVCLLCNSHDESRAHLFFECPFCGAVWR---FFTGRANLFPPAQLMYCLIWLLNPSRDK 249

Query: 380 K-QIINQHLVATTLWNIWNENNRRIFKEEEKKVDSVWEDIQ 419
              +I +      ++ IW E N  +     +  DSV +DIQ
Sbjct: 250 NTTLIIRLAFQAYVYAIWRERNLCLHTGVARVFDSVLKDIQ 287

[Close]

BLAST of CSPI06G18410 vs. NCBI nr
Match: gi|659130833|ref|XP_008465376.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 247.7 bits (631), Expect = 3.9e-62
Identity = 118/219 (53.88%), Postives = 156/219 (71.23%), Query Frame = 1


Query: 1   MDYLSILLNHLEKKNLIKGVSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 60
           MDYLS LL+HLE K  IKGVSFN   N++HLLFA D+L+F+ED+E+ ++N++ AL LFE 
Sbjct: 108 MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 167

Query: 61  ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 120
           ASGL  N +KSTISPINI   RT+ +A  +GF   FLP  YLGVPLGG P  R FW +T 
Sbjct: 168 ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 227

Query: 121 EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 180
           E + +K+N WKY+ +SK G++TL+KA+L+S P Y +  FK P  VYK+I+  WR+FLW  
Sbjct: 228 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 287

Query: 181 TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSK 220
           + DK+N +L+ W    SP   GGLGI+ ++ TN ALL K
Sbjct: 288 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCK 326

[Close]

BLAST of CSPI06G18410 vs. NCBI nr
Match: gi|659096604|ref|XP_008449185.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 5.7e-61
Identity = 117/219 (53.42%), Postives = 155/219 (70.78%), Query Frame = 1


Query: 1   MDYLSILLNHLEKKNLIKGVSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 60
           MDYLS L+  LE K  I GV F  K NLTH+LFA DIL+F+ED+EE I+N++ AL LFE 
Sbjct: 27  MDYLSHLITDLEGKGKIGGVKFGPKLNLTHILFADDILIFVEDNEEYISNLKMALLLFES 86

Query: 61  ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 120
           ASGLNINLNKSTI PIN+   R N +   WG   + LP  YLG+PLGG  +  +FW    
Sbjct: 87  ASGLNINLNKSTIFPINVPVNRANIIVESWGLRKDILPTSYLGMPLGGNLSSLNFWDNIL 146

Query: 121 EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 180
           +K+Q+K+++WKY+ LSKGG+ITLI +TL S P Y + VFK  K + + I+  WRNFLW+ 
Sbjct: 147 QKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQLSVFKALKGIARKIEASWRNFLWKG 206

Query: 181 TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSK 220
           T +  NI+LI+W+ +++P  KGGLGI+++ STN  LL K
Sbjct: 207 TSNGHNISLIRWAKIITPKEKGGLGIHSVHSTNSTLLCK 245

[Close]

BLAST of CSPI06G18410 vs. NCBI nr
Match: gi|659093714|ref|XP_008447678.1| (PREDICTED: uncharacterized protein LOC103490087 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 1.4e-56
Identity = 109/219 (49.77%), Postives = 151/219 (68.95%), Query Frame = 1


Query: 1   MDYLSILLNHLEKKNLIKGVSFNGKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 60
           MDYLS LL+HLE    IKGV      N++H+LFA DILLF+ED++  + N+R A+ LFE 
Sbjct: 1   MDYLSRLLSHLESTGAIKGVCLANDCNISHILFADDILLFVEDNDLYLKNLRMAISLFEK 60

Query: 61  ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 120
           ASGL INL+KS + P+N+   R    A+ W  S + LP+ YLGVPLGG P  + FW    
Sbjct: 61  ASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKSKLFWRNIE 120

Query: 121 EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 180
           +++Q+K++NWKYA +SKGG++TLIK+TL+S P Y + VF+ P   YK+I+ +WRNFLW+ 
Sbjct: 121 DRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKG 180

Query: 181 TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSK 220
           +   K  +LI W+ +  P  +G LGI+ +Q TN ALLSK
Sbjct: 181 SCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSK 219

[Close]

BLAST of CSPI06G18410 vs. NCBI nr
Match: gi|147856376|emb|CAN79629.1| (hypothetical protein VITISV_002584 [Vitis vinifera])

HSP 1 Score: 186.0 bits (471), Expect = 1.4e-43
Identity = 137/492 (27.85%), Postives = 216/492 (43.90%), Query Frame = 1


Query: 2   DYLSILLNHLEKKNLIKGVSFN-GKHNLTHLLFAADILLFMEDDEETINNMRNALRLFEL 61
           D LS +L   E++N+++G      +  ++HL FA D + F    EE +  ++N L +F  
Sbjct: 352 DVLSRMLLKAEERNVLEGFRVGRNRTRVSHLQFADDTIFFSSTREEDMMTLKNVLLVFGH 411

Query: 62  ASGLNINLNKSTISPINIDTQRTNYVAAKWGFSVNFLPIQYLGVPLGGKPNPRHFWSETT 121
            SGL +NLNKS I  IN++    + +A       +  PI YLG+PLGG P    FW    
Sbjct: 412 ISGLKVNLNKSNIYGINLEQNYLSRLAEMLDCKASGWPILYLGLPLGGNPKACGFWDPMI 471

Query: 122 EKLQRKINNWKYASLSKGGKITLIKATLASFPNYHILVFKPPKYVYKDIKTIWRNFLWRN 181
           E++  +++ W+ A LS GG+ITLI++     P Y + +F     V   I+ + R+FLW  
Sbjct: 472 ERISSRLDGWQKAYLSFGGRITLIQSCFTHMPCYFLSLFMISALVAAKIERMQRDFLWSG 531

Query: 182 TFDKKNINLIKWSTMLSPINKGGLGINNIQSTNFALLSKKGDSIANMWNAEKADRDLYPQ 241
             + K  +L+ W  +  P ++GGLG   I   N ALL K         +A      +   
Sbjct: 532 VGEGKRDHLVNWDVVCKPKSRGGLGFGKISIRNVALLGKWLWRYPREGSALCISVVMDKN 591

Query: 242 KPLRSV----KEVLWEY----------------MKASLPPLPDSGV--DNHRWILNNNGS 301
            P+ S+    +   W +                +  SL  L  S +  D   W L+  G 
Sbjct: 592 APISSIIGYSRPFSWNFNFRRNLSDSEIEDLEGLMRSLDRLHISPLVPDKRSWSLSPLGL 651

Query: 302 FTVASIKLARPLNNQDETNEDDGKIYNNLWKSTIPKRCKFF------------------- 361
           FTV S  LA  L+   E+       +  +W S +P + K F                   
Sbjct: 652 FTVKSFFLA--LSQYSESPPVFPTKF--VWNSQVPFKVKSFVWLVAHKKVNTNDLLQLRR 711

Query: 362 ------PSWCILCKAAEEDRQHLFAHCPFTTLLWKKVEVILGKPLLFPNSTA-LCKDLFK 421
                 P  C LC   EE   HLF HC  T  LW  +  +     +   S + +  + F 
Sbjct: 712 PHKALSPDICKLCMKHEETVDHLFLHCSLTMGLWYILFQLAKTDWVSSRSISDMLSNNFN 771

Query: 422 TKGKTKKQIIN-QHLVATTLWNIWNENNRRIFKEEEKKVDSVWEDIQAITGFWTSRSSLF 444
             G +K+ ++  Q      +W +W E N RIF+++ +  + +W+ I+ +   W   S +F
Sbjct: 772 GFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKVRNSEYLWDSIRFLASLWAFCSKVF 831

[Close]

BLAST of CSPI06G18410 vs. NCBI nr
Match: gi|659122972|ref|XP_008461420.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 3.8e-41
Identity = 112/346 (32.37%), Postives = 159/346 (45.95%), Query Frame = 1


Query: 130 WKYASLSKGGKITLIKATLASFPNYHILVFK--PPKYVYKDIKTIWRNFLWR-NTFDKKN 189
           WK   +SK  K       + SFP++        P K V + I   + N  W+ N  D  +
Sbjct: 77  WKRLIISKYDK-----EKMGSFPSHGKFSSNNSPWKAVTECISWFYNNISWKVNDGDDIS 136

Query: 190 INLIKWSTMLSPINKGGLGINNIQSTNFALLSKKGDSIANMWNAEKADRDLYPQKPLRSV 249
             L  W+        G   ++      FAL + K  ++   WN    D  L+  +PLR  
Sbjct: 137 FWLDNWN--------GNAPLSLAVPRLFALSTNKKGTVKEFWNPSSNDWHLHINRPLRDH 196

Query: 250 KEVLWEYMKASLP-PLPDSGVDNHRWILNNNGSFTVASIKLARPLNNQDETNEDDGKIYN 309
           +E LW  +KASLP PLP+ G     W LN+N  F  AS+K A         N     +Y 
Sbjct: 197 EENLWHNIKASLPTPLPNRGHPKPLWKLNSNNIFDTASVKRALAEAPISPANFHPN-LYK 256

Query: 310 NLWKSTIPKRCKFF-------------------------PSWCILCKAAEEDRQHLFAHC 369
            LWK   PK+CKFF                         P+WC +C  ++ED  HLF HC
Sbjct: 257 TLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHC 316

Query: 370 PFTTLLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQIINQHLVATTLWNIWNENNR 429
           P++  LW K + +L       +  +L +++     + +K +I  +  AT LW IW E N 
Sbjct: 317 PYSQQLWSKAKALLNWNSTPTDVQSLVQNICSLNTRNQKGLITFNTNATILWKIWLERNN 376

Query: 430 RIFKEEEKKVDSVWEDIQAITGFWTSRSSLFKNYSTSSIPLNLNAF 447
           RIFK++EK    +WED  A  G W+ +S LF NY   SI LN++AF
Sbjct: 377 RIFKQQEKAPQDLWEDTLAQIGLWSCKSKLFSNYDCCSIALNISAF 408

The following BLAST results are available for this feature:

BLAST of CSPI06G18410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNHX1_ARATH	6.8e-14	35.85	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P...	[more]

BLAST of CSPI06G18410 vs. TrEMBL


Match Name	E-value	Identity	Description
A5C3A7_VITVI	9.7e-44	27.85	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002584 PE=4 SV=1	[more]
A5AD48_VITVI	1.5e-39	26.61	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026527 PE=4 SV=1	[more]
M5WKV4_PRUPE	8.0e-38	38.81	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015607mg PE=4 S...	[more]
M5XHS0_PRUPE	8.0e-38	38.81	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020085mg PE=4 S...	[more]
M5VS59_PRUPE	1.8e-37	38.36	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016504mg PE=4 S...	[more]

BLAST of CSPI06G18410 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24255.1	3.6e-13	28.87	RNA-directed DNA polymerase (reverse transcriptase)-related family p...	[more]
AT1G43730.1	9.4e-06	29.70	RNA-directed DNA polymerase (reverse transcriptase)-related family p...	[more]

BLAST of CSPI06G18410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130833\|ref\|XP_008465376.1\|	3.9e-62	53.88	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659096604\|ref\|XP_008449185.1\|	5.7e-61	53.42	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659093714\|ref\|XP_008447678.1\|	1.4e-56	49.77	PREDICTED: uncharacterized protein LOC103490087 [Cucumis melo]	[more]
gi\|147856376\|emb\|CAN79629.1\|	1.4e-43	27.85	hypothetical protein VITISV_002584 [Vitis vinifera]	[more]
gi\|659122972\|ref\|XP_008461420.1\|	3.8e-41	32.37	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G18410.1	CSPI06G18410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 3..139 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G18410	Cucurbita moschata (Rifu)	cmocpiB308
CSPI06G18410	Cucurbita moschata (Rifu)	cmocpiB771
CSPI06G18410	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G18410	Melon (DHL92) v3.5.1	cpimeB467
CSPI06G18410	Melon (DHL92) v3.5.1	cpimeB505
CSPI06G18410	Watermelon (Charleston Gray)	cpiwcgB534
CSPI06G18410	Watermelon (97103) v1	cpiwmB483
CSPI06G18410	Bottle gourd (USVL1VR-Ls)	cpilsiB490
CSPI06G18410	Melon (DHL92) v3.6.1	cpimedB459
CSPI06G18410	Cucumber (Gy14) v2	cgybcpiB191
CSPI06G18410	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G18410	Silver-seed gourd	carcpiB0071
CSPI06G18410	Silver-seed gourd	carcpiB0872
CSPI06G18410	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G18410	Watermelon (97103) v2	cpiwmbB524
CSPI06G18410	Wax gourd	cpiwgoB578
CSPI06G18410	Wild cucumber (PI 183967)	cpicpiB166
CSPI06G18410	Cucumber (Gy14) v1	cgycpiB077
CSPI06G18410	Cucurbita maxima (Rimu)	cmacpiB317
CSPI06G18410	Cucurbita maxima (Rimu)	cmacpiB781