CSPI06G17470 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G17470
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 15667849 .. 15668133 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTTCTGAGAGAAAGAGAAATTAGGGGTTCTCGTGGTGACCTGGCGAAGATTGGGAGAGAGGGGTTCCAAATAATTGATGAATACTTTGGTCGAGCATCGTCGACAGGGGCGACACGGGTGGCGGCGAAGACGGCAAGGCCAGCTTTGCCGCAACCACCATGTAAGGCGGAGCAGCCTCCAAGGATAAGGAAGGAAAAACCCTTGGCCGCCGTGACCTCCGATCAAGTGGCTAAACATGGCGGCGGAACCGTGATAACAACTTGGGGTCCGTATGCAAAA

mRNA sequence

ATGGGATTTCTGAGAGAAAGAGAAATTAGGGGTTCTCGTGGTGACCTGGCGAAGATTGGGAGAGAGGGGTTCCAAATAATTGATGAATACTTTGGTCGAGCATCGTCGACAGGGGCGACACGGGTGGCGGCGAAGACGGCAAGGCCAGCTTTGCCGCAACCACCATGTAAGGCGGAGCAGCCTCCAAGGATAAGGAAGGAAAAACCCTTGGCCGCCGTGACCTCCGATCAAGTGGCTAAACATGGCGGCGGAACCGTGATAACAACTTGGGGTCCGTATGCAAAA

Coding sequence (CDS)

ATGGGATTTCTGAGAGAAAGAGAAATTAGGGGTTCTCGTGGTGACCTGGCGAAGATTGGGAGAGAGGGGTTCCAAATAATTGATGAATACTTTGGTCGAGCATCGTCGACAGGGGCGACACGGGTGGCGGCGAAGACGGCAAGGCCAGCTTTGCCGCAACCACCATGTAAGGCGGAGCAGCCTCCAAGGATAAGGAAGGAAAAACCCTTGGCCGCCGTGACCTCCGATCAAGTGGCTAAACATGGCGGCGGAACCGTGATAACAACTTGGGGTCCGTATGCAAAA
Homology
[Close]
BLAST of CSPI06G17470 vs. TrEMBL
Match: A0A0A0KG95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.7e-43
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGATRVAAKTARPALPQPPCKAEQ 60
          MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGA RVAAKTARPALPQPP KAEQ
Sbjct: 1  MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQ 60

Query: 61 PPRIRKEKPLAAVTSDQVAKHGGGTVITTWGPYAK 96
          PPRIRKEKP+AAVTSDQVAKHGGGTVITTW PYAK
Sbjct: 61 PPRIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 95

[Close]
BLAST of CSPI06G17470 vs. TrEMBL
Match: A0A0A0KI19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.7e-17
Identity = 57/93 (61.29%), Postives = 66/93 (70.97%), Query Frame = 1 

Query: 5  REREIRGSRGDLAKIGREGFQIIDEYFGRASSTGATRVAAKT-ARPALPQPPCK-AEQPP 64
          REREI  +  +LA+IG EGF++ID++FGRAS+TG  RV A T  RPA  QPP K AEQPP
Sbjct: 4  REREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPP 63

Query: 65 RIRKEKPLAAVTSDQVAKHGGGTVITTWGPYAK 96
             KEK  A VTSD +AK  GG VITTW  YAK
Sbjct: 64 SKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAK 96

[Close]
BLAST of CSPI06G17470 vs. NCBI nr
Match: gi|700192218|gb|KGN47422.1| (hypothetical protein Csa_6G318690 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-42
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGATRVAAKTARPALPQPPCKAEQ 60
          MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGA RVAAKTARPALPQPP KAEQ
Sbjct: 1  MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQ 60

Query: 61 PPRIRKEKPLAAVTSDQVAKHGGGTVITTWGPYAK 96
          PPRIRKEKP+AAVTSDQVAKHGGGTVITTW PYAK
Sbjct: 61 PPRIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 95

[Close]
BLAST of CSPI06G17470 vs. NCBI nr
Match: gi|700192217|gb|KGN47421.1| (hypothetical protein Csa_6G318680 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 5.3e-17
Identity = 57/93 (61.29%), Postives = 66/93 (70.97%), Query Frame = 1 

Query: 5  REREIRGSRGDLAKIGREGFQIIDEYFGRASSTGATRVAAKT-ARPALPQPPCK-AEQPP 64
          REREI  +  +LA+IG EGF++ID++FGRAS+TG  RV A T  RPA  QPP K AEQPP
Sbjct: 4  REREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPP 63

Query: 65 RIRKEKPLAAVTSDQVAKHGGGTVITTWGPYAK 96
             KEK  A VTSD +AK  GG VITTW  YAK
Sbjct: 64 SKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAK 96

The following BLAST results are available for this feature:
BLAST of CSPI06G17470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G17470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KG95_CUCSA8.7e-4395.79Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318690 PE=4 SV=1[more]
A0A0A0KI19_CUCSA3.7e-1761.29Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318680 PE=4 SV=1[more]
BLAST of CSPI06G17470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G17470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192218|gb|KGN47422.1|1.2e-4295.79hypothetical protein Csa_6G318690 [Cucumis sativus][more]
gi|700192217|gb|KGN47421.1|5.3e-1761.29hypothetical protein Csa_6G318680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G17470.1CSPI06G17470.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G17470Watermelon (97103) v2cpiwmbB490
CSPI06G17470Watermelon (97103) v2cpiwmbB496
CSPI06G17470Wax gourdcpiwgoB541
CSPI06G17470Wax gourdcpiwgoB563
CSPI06G17470Wild cucumber (PI 183967)cpicpiB135
CSPI06G17470Cucumber (Gy14) v1cgycpiB065
CSPI06G17470Cucumber (Gy14) v1cgycpiB390
CSPI06G17470Cucurbita maxima (Rimu)cmacpiB382
CSPI06G17470Cucurbita maxima (Rimu)cmacpiB862
CSPI06G17470Cucurbita maxima (Rimu)cmacpiB924
CSPI06G17470Cucurbita moschata (Rifu)cmocpiB260
CSPI06G17470Cucurbita moschata (Rifu)cmocpiB371
CSPI06G17470Cucurbita moschata (Rifu)cmocpiB373
CSPI06G17470Cucurbita moschata (Rifu)cmocpiB904
CSPI06G17470Cucumber (Chinese Long) v2cpicuB293
CSPI06G17470Cucumber (Chinese Long) v2cpicuB313
CSPI06G17470Melon (DHL92) v3.5.1cpimeB435
CSPI06G17470Melon (DHL92) v3.5.1cpimeB500
CSPI06G17470Watermelon (Charleston Gray)cpiwcgB499
CSPI06G17470Watermelon (Charleston Gray)cpiwcgB504
CSPI06G17470Watermelon (97103) v1cpiwmB514
CSPI06G17470Watermelon (97103) v1cpiwmB557
CSPI06G17470Cucurbita pepo (Zucchini)cpecpiB153
CSPI06G17470Cucurbita pepo (Zucchini)cpecpiB325
CSPI06G17470Cucurbita pepo (Zucchini)cpecpiB628
CSPI06G17470Bottle gourd (USVL1VR-Ls)cpilsiB405
CSPI06G17470Bottle gourd (USVL1VR-Ls)cpilsiB471
CSPI06G17470Melon (DHL92) v3.6.1cpimedB434
CSPI06G17470Melon (DHL92) v3.6.1cpimedB486
CSPI06G17470Cucumber (Gy14) v2cgybcpiB149
CSPI06G17470Cucumber (Gy14) v2cgybcpiB287
CSPI06G17470Silver-seed gourdcarcpiB0083
CSPI06G17470Silver-seed gourdcarcpiB0311
CSPI06G17470Silver-seed gourdcarcpiB0739
CSPI06G17470Cucumber (Chinese Long) v3cpicucB344
CSPI06G17470Cucumber (Chinese Long) v3cpicucB355
CSPI06G17470Cucumber (Chinese Long) v3cpicucB365