CSPI06G17420 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G17420
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr6 : 15653120 .. 15654306 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATGAGATGGAATCTTTACATGCAAACCACACCTTTGAGCTTGTTAAGTTGCCTAAAGGAAAAACTGCACTAAAAAATAAGTGGATTTACAAAATTAAACATGAAGAACATACCTCAAAGCCACGTTACAAAGCAAGATTGGTTGTCAAAGGGTTCAGTCAAAAGAAAGGTATCGACTTTGATGAAATTTTTGCGCCAGTTGTCAAGATGTCCTCCATACGTGTTGTTCTGGGTTTGGCAGCCAGTCTTGACTTAGAGGTTGAGCAGATGGATGTTAAAACTGATTTTCTTCATGGGGATTTAGACAAAGAAATCTATATGGAACAACCAAAGGGTTTTGAGCAGAAAGGAAAAGGGCATCTGATGTGTAAATTGAAGAAAAGTCTCTATGGATTGAAACAGGCACCGAGACAGTGGTACAAGAAGTTTAAGTCAGTTATGGGAGAGAAGGCTATATAAAAACTACTTCTGCTCACTGTGTTTTTGTCCAGAAATTTTATAATGATGATTTTGTTATATTATTAATCTACGTTTATGACATTTTGATTGTTGGTAGGAATGTTTCGAGAATGGATAACTTGAAGAAACAATTGAGCAAATCATTTGCCATGAAGGTTTTGGGACCAGCAAAGAAAGTTCTTGGAATTCGAATAGTTTGAGATAGAGCATCCAAGAAGTTATACATGTCACAGGAGCAATACATAGAGAAAGTACTTGAACGTTTCAAGATGAGTCAATCAAAATTAGTTAGTTCTCCTTTACCCAGTCACTTCAAACTGATCAGTAAACAGAGCCCTTCTACAGAAAAAGAGAAGGAGGATATGAGTAAGGTCTTGTATGCTTCAACAGTTGGAAGCCTAATGTATGTCATGGTATGTACTAGACCTGATATTGCTCATGCTGTTGGAGTTGTTAGTCGTTTTATGTTCAATCCAGGAAAACAACGTTGGGAGGCAGTCAAGTGCATCATGAGATATTTGAGAGGTACTTCCATTTTGAAGCTCACATTTGAGGATGGAAAGCCAGTACTTGCTGGGTATACTGATTCAGATATGGCAGGGGGCTTAGACAGCAGAAAGTCTACTTTTGGTTACTTGATGACATTTGCAGGTGGTGCAGTGTCCTGGCAGTCAAGGTTGCAGAAATGTGTTGCCCTTTCTACAAAGAGATGTTGTGGATGA

mRNA sequence

ATGAAAGATGAGATGGAATCTTTACATGCAAACCACACCTTTGAGCTTGTTAAGTTGCCTAAAGGAAAAACTGCACTAAAAAATAAGTGGATTTACAAAATTAAACATGAAGAACATACCTCAAAGCCACGTTACAAAGCAAGATTGGTTGTCAAAGGGTTCAGTCAAAAGAAAGGTATCGACTTTGATGAAATTTTTGCGCCAGTTGTCAAGATGTCCTCCATACGTGTTGTTCTGGGTTTGGCAGCCAGTCTTGACTTAGAGGTTGAGCAGATGGATGTTAAAACTGATTTTCTTCATGGGGATTTAGACAAAGAAATCTATATGGAACAACCAAAGGGTTTTGAGCAGAAAGGAAAAGGGCATCTGATGTGTAAATTGAAGAAAAGTCTCTATGGATTGAAACAGGCACCGAGACAGTGGTACAAGAAGTTTAAGAATGTTTCGAGAATGGATAACTTGAAGAAACAATTGAGCAAATCATTTGCCATGAAGGAGCAATACATAGAGAAAGTACTTGAACGTTTCAAGATGAGTCAATCAAAATTAGTTAGTTCTCCTTTACCCAGTCACTTCAAACTGATCAGTAAACAGAGCCCTTCTACAGAAAAAGAGAAGGAGGATATGAGTAAGGTCTTGTATGCTTCAACAGTTGGAAGCCTAATGTATGTCATGGTATGTACTAGACCTGATATTGCTCATGCTGTTGGAGTTGTTAGTCGTTTTATGTTCAATCCAGGAAAACAACGTTGGGAGGCAGTCAAGTGCATCATGAGATATTTGAGAGGTACTTCCATTTTGAAGCTCACATTTGAGGATGGAAAGCCAGTACTTGCTGGGTATACTGATTCAGATATGGCAGGGGGCTTAGACAGCAGAAAGTCTACTTTTGGTTACTTGATGACATTTGCAGGTGGTGCAGTGTCCTGGCAGTCAAGGTTGCAGAAATGTGTTGCCCTTTCTACAAAGAGATGTTGTGGATGA

Coding sequence (CDS)

ATGAAAGATGAGATGGAATCTTTACATGCAAACCACACCTTTGAGCTTGTTAAGTTGCCTAAAGGAAAAACTGCACTAAAAAATAAGTGGATTTACAAAATTAAACATGAAGAACATACCTCAAAGCCACGTTACAAAGCAAGATTGGTTGTCAAAGGGTTCAGTCAAAAGAAAGGTATCGACTTTGATGAAATTTTTGCGCCAGTTGTCAAGATGTCCTCCATACGTGTTGTTCTGGGTTTGGCAGCCAGTCTTGACTTAGAGGTTGAGCAGATGGATGTTAAAACTGATTTTCTTCATGGGGATTTAGACAAAGAAATCTATATGGAACAACCAAAGGGTTTTGAGCAGAAAGGAAAAGGGCATCTGATGTGTAAATTGAAGAAAAGTCTCTATGGATTGAAACAGGCACCGAGACAGTGGTACAAGAAGTTTAAGAATGTTTCGAGAATGGATAACTTGAAGAAACAATTGAGCAAATCATTTGCCATGAAGGAGCAATACATAGAGAAAGTACTTGAACGTTTCAAGATGAGTCAATCAAAATTAGTTAGTTCTCCTTTACCCAGTCACTTCAAACTGATCAGTAAACAGAGCCCTTCTACAGAAAAAGAGAAGGAGGATATGAGTAAGGTCTTGTATGCTTCAACAGTTGGAAGCCTAATGTATGTCATGGTATGTACTAGACCTGATATTGCTCATGCTGTTGGAGTTGTTAGTCGTTTTATGTTCAATCCAGGAAAACAACGTTGGGAGGCAGTCAAGTGCATCATGAGATATTTGAGAGGTACTTCCATTTTGAAGCTCACATTTGAGGATGGAAAGCCAGTACTTGCTGGGTATACTGATTCAGATATGGCAGGGGGCTTAGACAGCAGAAAGTCTACTTTTGGTTACTTGATGACATTTGCAGGTGGTGCAGTGTCCTGGCAGTCAAGGTTGCAGAAATGTGTTGCCCTTTCTACAAAGAGATGTTGTGGATGA
Homology
[Close]
BLAST of CSPI06G17420 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.9e-54
Identity = 107/159 (67.30%), Postives = 127/159 (79.87%), Query Frame = 1 

Query: 1   MKDEMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGI 60
           M++EMESL  N T++LV+LPKGK  LK KW++K+K +      RYKARLVVKGF QKKGI
Sbjct: 830 MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61  DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTDFLHGDLDKEIYMEQPKGFEQKGK 120
           DFDEIF+PVVKM+SIR +L LAASLDLEVEQ+DVKT FLHGDL++EIYMEQP+GFE  GK
Sbjct: 890 DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGK 949

Query: 121 GHLMCKLKKSLYGLKQAPRQWYKKFKNVSRMDNLKKQLS 160
            H++CKL KSLYGLKQAPRQWY KF +  +     K  S
Sbjct: 950 KHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYS 988

[Close]
BLAST of CSPI06G17420 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 126.7 bits (317), Expect = 4.6e-28
Identity = 63/143 (44.06%), Postives = 95/143 (66.43%), Query Frame = 1 

Query: 4    EMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGIDFD 63
            E+ +   N+T+ + K P+ K  + ++W++ +K+ E  +  RYKARLV +GF+QK  ID++
Sbjct: 913  ELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYE 972

Query: 64   EIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTDFLHGDLDKEIYMEQPKGFEQKGKGHL 123
            E FAPV ++SS R +L L    +L+V QMDVKT FL+G L +EIYM  P+G         
Sbjct: 973  ETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDN-- 1032

Query: 124  MCKLKKSLYGLKQAPRQWYKKFK 147
            +CKL K++YGLKQA R W++ F+
Sbjct: 1033 VCKLNKAIYGLKQAARCWFEVFE 1053

[Close]
BLAST of CSPI06G17420 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.6e-12
Identity = 53/170 (31.18%), Postives = 89/170 (52.35%), Query Frame = 1 

Query: 154 LKKQLSKSFAMKEQYIEKVLERFKMSQSKLVSSPLPSHFKLISKQSPSTEKEKEDMSKVL 213
           +K   S  F  + +Y E++L    M   K +S+PLP   KL S  S +   +  D     
Sbjct: 47  IKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSD----- 106

Query: 214 YASTVGSLMYVMVCTRPDIAHAVGVVSRFMFNPGKQRWEAVKCIMRYLRGTSILKL-TFE 273
           + S VG+L Y+ + TRPDI++AV +V + M  P    ++ +K ++RY++GT    L   +
Sbjct: 107 FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 166

Query: 274 DGKPVLAGYTDSDMAGGLDSRKSTFGYLMTFAGGAVSWQSRLQKCVALST 323
           + K  +  + DSD AG   +R+ST G+        +SW ++ Q  V+ S+
Sbjct: 167 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSS 208

[Close]
BLAST of CSPI06G17420 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-10
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 1 

Query: 1   MKDEMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGI 60
           M++E+++L  N T+ LV  P  +  L  KW++K K     +  R KARLV KGF Q++GI
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DFDEIFAPVVKMSSIRVVLGLAASLDL 88
            F E ++PVV+ ++IR +L +A  L++
Sbjct: 104 YFVETYSPVVRTATIRTILNVAQQLEV 130

[Close]
BLAST of CSPI06G17420 vs. Swiss-Prot
Match: YC21B_YEAST (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-C PE=3 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 8.5e-06
Identity = 30/103 (29.13%), Postives = 54/103 (52.43%), Query Frame = 1 

Query: 45   YKARLVVKGFSQKKGIDFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTDFLHGDLD 104
            +KAR V +G  Q       ++ +  V   ++   L +A   D  + Q+D+ + +L+ D+ 
Sbjct: 1313 HKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIK 1372

Query: 105  KEIYMEQPKGFEQKGKGHLMCKLKKSLYGLKQAPRQWYKKFKN 148
            +E+Y+  P      G    + +L+KSLYGLKQ+   WY+  K+
Sbjct: 1373 EELYIRPPPHL---GLNDKLLRLRKSLYGLKQSGANWYETIKS 1412

[Close]
BLAST of CSPI06G17420 vs. TrEMBL
Match: A5C3L0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007384 PE=4 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 1.3e-138
Identity = 259/353 (73.37%), Postives = 292/353 (82.72%), Query Frame = 1 

Query: 1    MKDEMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGI 60
            M+DEMESLH NH+FELVKLPKGK  LKN+W+Y++K EEHTS+PRYKARLVVKGF+QKKGI
Sbjct: 797  MRDEMESLHENHSFELVKLPKGKRXLKNRWVYRVKQEEHTSQPRYKARLVVKGFNQKKGI 856

Query: 61   DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTDFLHGDLDKEIYMEQPKGFEQKGK 120
            DFDEIF+PVVKMSSIRVVLGLAASLDLE++QMDVKT FLHGDLDKEIYMEQP+GF  KGK
Sbjct: 857  DFDEIFSPVVKMSSIRVVLGLAASLDLEIQQMDVKTAFLHGDLDKEIYMEQPEGFVLKGK 916

Query: 121  GHLMCKLKKSLYGLKQAPRQWYKKF-----KNVSRMDNLKKQLSKSFAMKE--------- 180
               +CKLKKSLYGLKQAPRQWYKKF     +NVSR+DNLKKQLSKSFAMK+         
Sbjct: 917  EDYVCKLKKSLYGLKQAPRQWYKKFESVMGENVSRIDNLKKQLSKSFAMKDLGPVKRILG 976

Query: 181  -----------------QYIEKVLERFKMSQSKLVSSPLPSHFKLISKQSPSTEKEKEDM 240
                             QYIEKVL +F MS++K+VSSPL SHFKL S+ +PST+KEKEDM
Sbjct: 977  IRIERDRASKKLCMLQKQYIEKVLAKFNMSKAKVVSSPLASHFKLSSRHNPSTDKEKEDM 1036

Query: 241  SKVLYASTVGSLMYVMVCTRPDIAHAVGVVSRFMFNPGKQRWEAVKCIMRYLRGTSILKL 300
             +VLYAS VGSL+YVMVC RPDIA+AVGVVSRF+ NPG+  WEAVK IMRYLRG S LKL
Sbjct: 1037 RRVLYASVVGSLIYVMVCIRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGISKLKL 1096

Query: 301  TFEDGKPVLAGYTDSDMAGGLDSRKSTFGYLMTFAGGAVSWQSRLQKCVALST 323
            TF  GKP+L GYTDSDMAG +D+R+ST  YLMTF+GGAVSWQSRLQKCVALST
Sbjct: 1097 TFGSGKPILVGYTDSDMAGDVDNRRSTSSYLMTFSGGAVSWQSRLQKCVALST 1149

[Close]
BLAST of CSPI06G17420 vs. TrEMBL
Match: A5C540_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024474 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 9.4e-137
Identity = 257/348 (73.85%), Postives = 286/348 (82.18%), Query Frame = 1 

Query: 1    MKDEMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGI 60
            M+DEMESLH NH+FELVKLPKGK ALKN+W+Y++K EEHTS+PRYKARLVVKGF+QKKGI
Sbjct: 729  MQDEMESLHENHSFELVKLPKGKRALKNRWVYRVKQEEHTSQPRYKARLVVKGFNQKKGI 788

Query: 61   DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTDFLHGDLDKEIYMEQPKGFEQKGK 120
            DFDEIF PVVKMSSIRVVLGLAASLDLE++QMDVKT FLHG+LDKEIYMEQP+GF  KGK
Sbjct: 789  DFDEIFFPVVKMSSIRVVLGLAASLDLEIQQMDVKTAFLHGNLDKEIYMEQPEGFVLKGK 848

Query: 121  GHLMCKLKKSLYGLKQAPRQWYKKFKNVSRMDNLKKQLSKSFAMK--------------- 180
               +CKLKKSLYGLKQAPRQW     NVSR+DNLKKQLSKSFAMK               
Sbjct: 849  EDYVCKLKKSLYGLKQAPRQW-----NVSRIDNLKKQLSKSFAMKDLGPVKRILGIRIER 908

Query: 181  -----------EQYIEKVLERFKMSQSKLVSSPLPSHFKLISKQSPSTEKEKEDMSKVLY 240
                       EQYIE VL RF MS++K+VSSPL SHFKL S+ SPST+KEKEDM +V Y
Sbjct: 909  DRASKKLCMLQEQYIENVLARFNMSKAKVVSSPLASHFKLSSRHSPSTDKEKEDMRRVPY 968

Query: 241  ASTVGSLMYVMVCTRPDIAHAVGVVSRFMFNPGKQRWEAVKCIMRYLRGTSILKLTFEDG 300
            AS VGSLMY MVCTRPDIA+A+GVVSRF+ NPG+  WEAVK IMRYLRGTS LKLTF  G
Sbjct: 969  ASAVGSLMYAMVCTRPDIAYAIGVVSRFLSNPGRHHWEAVKWIMRYLRGTSKLKLTFGSG 1028

Query: 301  KPVLAGYTDSDMAGGLDSRKSTFGYLMTFAGGAVSWQSRLQKCVALST 323
            KP+L GYTDSDMAG +D+R+ T GYLMTF+GGAVSWQSRLQKCVALST
Sbjct: 1029 KPILVGYTDSDMAGDVDNRRXTSGYLMTFSGGAVSWQSRLQKCVALST 1071

[Close]
BLAST of CSPI06G17420 vs. TrEMBL
Match: A5BAF2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027081 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 1.8e-119
Identity = 233/351 (66.38%), Postives = 268/351 (76.35%), Query Frame = 1 

Query: 1    MKDEMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGI 60
            M+DEMESLH NH FELVKLPKGK ALK +W+Y++K EEHTS+P YKARL+VKGF+QKKG 
Sbjct: 698  MQDEMESLHVNHYFELVKLPKGKRALKXRWVYRVKQEEHTSQPXYKARLIVKGFNQKKGX 757

Query: 61   DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTDFLHGDLDKEIYMEQPKGFEQKGK 120
            DFDEIF+PVVKMSSIRVVLGLAASLDLE++QMDVKT FLHGDL KEIYMEQP+GF+    
Sbjct: 758  DFDEIFSPVVKMSSIRVVLGLAASLDLEIQQMDVKTAFLHGDLXKEIYMEQPEGFKFSDD 817

Query: 121  GHLMCKLKKS---LYGLKQAPRQWYKKFKNVSRMDNLKKQLSKSFAMK------------ 180
              ++  L      + G            +NVSR+DNLKKQLSKSFAMK            
Sbjct: 818  DFVILLLYVDDILIVG------------RNVSRIDNLKKQLSKSFAMKDLGPVKRILGIR 877

Query: 181  --------------EQYIEKVLERFKMSQSKLVSSPLPSHFKLISKQSPSTEKEKEDMSK 240
                          EQYIEK+L RF MS++K+VSSPL SHFKL S+ +PST+KEKEDM +
Sbjct: 878  IERDRAXKKLCMLQEQYIEKMLARFNMSKAKVVSSPLASHFKLSSRHNPSTDKEKEDMRR 937

Query: 241  VLYASTVGSLMYVMVCTRPDIAHAVGVVSRFMFNPGKQRWEAVKCIMRYLRGTSILKLTF 300
            V YAS VGSLMYVMVCTRPDIA+A+GVV RF+ NPG+  WEAVK IMRYLRGTS LKLTF
Sbjct: 938  VSYASAVGSLMYVMVCTRPDIAYAIGVVIRFLSNPGRHHWEAVKWIMRYLRGTSKLKLTF 997

Query: 301  EDGKPVLAGYTDSDMAGGLDSRKSTFGYLMTFAGGAVSWQSRLQKCVALST 323
              GKP+L GYTDSDMAG +D+R+ST GYLMTF+GG VSWQSR QKCVALST
Sbjct: 998  GGGKPILVGYTDSDMAGDVDNRRSTLGYLMTFSGGTVSWQSRQQKCVALST 1036

[Close]
BLAST of CSPI06G17420 vs. TrEMBL
Match: G8DCY4_PHAVU (Putative gag/pol polyprotein OS=Phaseolus vulgaris PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 2.2e-117
Identity = 227/390 (58.21%), Postives = 276/390 (70.77%), Query Frame = 1 

Query: 1    MKDEMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGI 60
            M+DEM+SLH NHTF+LVKLPK K AL+N+WIY++K E +++ PRYKARLVVKGF Q+KGI
Sbjct: 774  MQDEMKSLHDNHTFDLVKLPKDKKALENRWIYRVKQESNSTSPRYKARLVVKGFRQRKGI 833

Query: 61   DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTDFLHGDLDKEIYMEQPKGFEQKGK 120
            DF+EIF+PVVKMSSIR+VL LAA+LDLEVEQMDVKT FLHGDL++EIYM+QP GF  +GK
Sbjct: 834  DFNEIFSPVVKMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVEGK 893

Query: 121  GHLMCKLKKSLYGLKQAPRQWYKKF----------------------------------- 180
               +C+L+KSLYGLKQAPRQWYKKF                                   
Sbjct: 894  EDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYV 953

Query: 181  -------KNVSRMDNLKKQLSKSFAMK--------------------------EQYIEKV 240
                   K++S ++ LKKQLS+SFAMK                          E Y+++V
Sbjct: 954  DDILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRV 1013

Query: 241  LERFKMSQSKLVSSPLPSHFKLISKQSPSTEKEKEDMSKVLYASTVGSLMYVMVCTRPDI 300
            L+RF+M  +K+VS+PL +HFKL +KQSPS E EK DM ++ YAS VGSLMY MVCTRPDI
Sbjct: 1014 LQRFQMENAKVVSTPLATHFKLSTKQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDI 1073

Query: 301  AHAVGVVSRFMFNPGKQRWEAVKCIMRYLRGTSILKLTFEDGKPVLAGYTDSDMAGGLDS 323
            AH VG VSRFM NPG++ W AVK I+RYLRGT+ L+L F   KP L GYTDSDM G +DS
Sbjct: 1074 AHVVGTVSRFMSNPGREHWNAVKWILRYLRGTTCLRLCFGGDKPTLVGYTDSDMGGDIDS 1133

[Close]
BLAST of CSPI06G17420 vs. TrEMBL
Match: Q9ZRJ0_TOBAC (Retrotransposon Tto1 DNA OS=Nicotiana tabacum PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 1.0e-114
Identity = 230/390 (58.97%), Postives = 278/390 (71.28%), Query Frame = 1 

Query: 1    MKDEMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGI 60
            M+DE++SLH N TFELVKLPKGK ALKNKW++K+KH+EH S PR+KARLVVKGF+Q+KGI
Sbjct: 831  MQDEIKSLHENKTFELVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLVVKGFNQRKGI 890

Query: 61   DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTDFLHGDLDKEIYMEQPKGFEQKGK 120
            DFDEIF+PVVKM+SIR VLGLAASL+LEVEQMDVKT FLHGDL++EIYMEQP GF+QKGK
Sbjct: 891  DFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEEEIYMEQPDGFQQKGK 950

Query: 121  GHLMCKLKKSLY--------------------GLKQAPRQ---WYKKF------------ 180
               +C+L+KSLY                    G K+       + +KF            
Sbjct: 951  EDYVCRLRKSLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFIILLLYV 1010

Query: 181  -------KNVSRMDNLKKQLSKSFAMK--------------------------EQYIEKV 240
                   +NVSR+++LK+QLSK FAMK                          E+YIEKV
Sbjct: 1011 DDMLIVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDREAKKLWLSQEKYIEKV 1070

Query: 241  LERFKMSQSKLVSSPLPSHFKLISKQSPSTEKEKEDMSKVLYASTVGSLMYVMVCTRPDI 300
            L+RF M ++K VS PL +HF+L +KQSPST+ E+  M ++ YAS VGSLMY MVCTRPDI
Sbjct: 1071 LQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYASAVGSLMYAMVCTRPDI 1130

Query: 301  AHAVGVVSRFMFNPGKQRWEAVKCIMRYLRGTSILKLTFEDGKPVLAGYTDSDMAGGLDS 323
            AHAVGVVSRF+ NPGK+ W+AVK I+RYLRGTS L L F +  PVL GYTD+DMAG +DS
Sbjct: 1131 AHAVGVVSRFLSNPGKEHWDAVKWILRYLRGTSKLCLCFGEDNPVLVGYTDADMAGDVDS 1190

[Close]
BLAST of CSPI06G17420 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-33
Identity = 68/149 (45.64%), Postives = 102/149 (68.46%), Query Frame = 1 

Query: 1   MKDEMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGI 60
           M DE+ ++   HT+E+  LP  K  +  KW+YKIK+    +  RYKARLV KG++Q++GI
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTDFLHGDLDKEIYMEQPKGFEQKGK 120
           DF E F+PV K++S++++L ++A  +  + Q+D+   FL+GDLD+EIYM+ P G+  +  
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQG 221

Query: 121 GHL----MCKLKKSLYGLKQAPRQWYKKF 146
             L    +C LKKS+YGLKQA RQW+ KF
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQASRQWFLKF 250

[Close]
BLAST of CSPI06G17420 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-13
Identity = 53/170 (31.18%), Postives = 89/170 (52.35%), Query Frame = 1 

Query: 154 LKKQLSKSFAMKEQYIEKVLERFKMSQSKLVSSPLPSHFKLISKQSPSTEKEKEDMSKVL 213
           +K   S  F  + +Y E++L    M   K +S+PLP   KL S  S +   +  D     
Sbjct: 47  IKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSD----- 106

Query: 214 YASTVGSLMYVMVCTRPDIAHAVGVVSRFMFNPGKQRWEAVKCIMRYLRGTSILKL-TFE 273
           + S VG+L Y+ + TRPDI++AV +V + M  P    ++ +K ++RY++GT    L   +
Sbjct: 107 FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 166

Query: 274 DGKPVLAGYTDSDMAGGLDSRKSTFGYLMTFAGGAVSWQSRLQKCVALST 323
           + K  +  + DSD AG   +R+ST G+        +SW ++ Q  V+ S+
Sbjct: 167 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSS 208

[Close]
BLAST of CSPI06G17420 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 68.6 bits (166), Expect = 8.4e-12
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 1 

Query: 1   MKDEMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGI 60
           M++E+++L  N T+ LV  P  +  L  KW++K K     +  R KARLV KGF Q++GI
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DFDEIFAPVVKMSSIRVVLGLAASLDL 88
            F E ++PVV+ ++IR +L +A  L++
Sbjct: 104 YFVETYSPVVRTATIRTILNVAQQLEV 130

[Close]
BLAST of CSPI06G17420 vs. NCBI nr
Match: gi|147816208|emb|CAN66323.1| (hypothetical protein VITISV_007384 [Vitis vinifera])

HSP 1 Score: 500.7 bits (1288), Expect = 1.9e-138
Identity = 259/353 (73.37%), Postives = 292/353 (82.72%), Query Frame = 1 

Query: 1    MKDEMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGI 60
            M+DEMESLH NH+FELVKLPKGK  LKN+W+Y++K EEHTS+PRYKARLVVKGF+QKKGI
Sbjct: 797  MRDEMESLHENHSFELVKLPKGKRXLKNRWVYRVKQEEHTSQPRYKARLVVKGFNQKKGI 856

Query: 61   DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTDFLHGDLDKEIYMEQPKGFEQKGK 120
            DFDEIF+PVVKMSSIRVVLGLAASLDLE++QMDVKT FLHGDLDKEIYMEQP+GF  KGK
Sbjct: 857  DFDEIFSPVVKMSSIRVVLGLAASLDLEIQQMDVKTAFLHGDLDKEIYMEQPEGFVLKGK 916

Query: 121  GHLMCKLKKSLYGLKQAPRQWYKKF-----KNVSRMDNLKKQLSKSFAMKE--------- 180
               +CKLKKSLYGLKQAPRQWYKKF     +NVSR+DNLKKQLSKSFAMK+         
Sbjct: 917  EDYVCKLKKSLYGLKQAPRQWYKKFESVMGENVSRIDNLKKQLSKSFAMKDLGPVKRILG 976

Query: 181  -----------------QYIEKVLERFKMSQSKLVSSPLPSHFKLISKQSPSTEKEKEDM 240
                             QYIEKVL +F MS++K+VSSPL SHFKL S+ +PST+KEKEDM
Sbjct: 977  IRIERDRASKKLCMLQKQYIEKVLAKFNMSKAKVVSSPLASHFKLSSRHNPSTDKEKEDM 1036

Query: 241  SKVLYASTVGSLMYVMVCTRPDIAHAVGVVSRFMFNPGKQRWEAVKCIMRYLRGTSILKL 300
             +VLYAS VGSL+YVMVC RPDIA+AVGVVSRF+ NPG+  WEAVK IMRYLRG S LKL
Sbjct: 1037 RRVLYASVVGSLIYVMVCIRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGISKLKL 1096

Query: 301  TFEDGKPVLAGYTDSDMAGGLDSRKSTFGYLMTFAGGAVSWQSRLQKCVALST 323
            TF  GKP+L GYTDSDMAG +D+R+ST  YLMTF+GGAVSWQSRLQKCVALST
Sbjct: 1097 TFGSGKPILVGYTDSDMAGDVDNRRSTSSYLMTFSGGAVSWQSRLQKCVALST 1149

[Close]
BLAST of CSPI06G17420 vs. NCBI nr
Match: gi|147836424|emb|CAN77602.1| (hypothetical protein VITISV_024474 [Vitis vinifera])

HSP 1 Score: 494.6 bits (1272), Expect = 1.3e-136
Identity = 257/348 (73.85%), Postives = 286/348 (82.18%), Query Frame = 1 

Query: 1    MKDEMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGI 60
            M+DEMESLH NH+FELVKLPKGK ALKN+W+Y++K EEHTS+PRYKARLVVKGF+QKKGI
Sbjct: 729  MQDEMESLHENHSFELVKLPKGKRALKNRWVYRVKQEEHTSQPRYKARLVVKGFNQKKGI 788

Query: 61   DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTDFLHGDLDKEIYMEQPKGFEQKGK 120
            DFDEIF PVVKMSSIRVVLGLAASLDLE++QMDVKT FLHG+LDKEIYMEQP+GF  KGK
Sbjct: 789  DFDEIFFPVVKMSSIRVVLGLAASLDLEIQQMDVKTAFLHGNLDKEIYMEQPEGFVLKGK 848

Query: 121  GHLMCKLKKSLYGLKQAPRQWYKKFKNVSRMDNLKKQLSKSFAMK--------------- 180
               +CKLKKSLYGLKQAPRQW     NVSR+DNLKKQLSKSFAMK               
Sbjct: 849  EDYVCKLKKSLYGLKQAPRQW-----NVSRIDNLKKQLSKSFAMKDLGPVKRILGIRIER 908

Query: 181  -----------EQYIEKVLERFKMSQSKLVSSPLPSHFKLISKQSPSTEKEKEDMSKVLY 240
                       EQYIE VL RF MS++K+VSSPL SHFKL S+ SPST+KEKEDM +V Y
Sbjct: 909  DRASKKLCMLQEQYIENVLARFNMSKAKVVSSPLASHFKLSSRHSPSTDKEKEDMRRVPY 968

Query: 241  ASTVGSLMYVMVCTRPDIAHAVGVVSRFMFNPGKQRWEAVKCIMRYLRGTSILKLTFEDG 300
            AS VGSLMY MVCTRPDIA+A+GVVSRF+ NPG+  WEAVK IMRYLRGTS LKLTF  G
Sbjct: 969  ASAVGSLMYAMVCTRPDIAYAIGVVSRFLSNPGRHHWEAVKWIMRYLRGTSKLKLTFGSG 1028

Query: 301  KPVLAGYTDSDMAGGLDSRKSTFGYLMTFAGGAVSWQSRLQKCVALST 323
            KP+L GYTDSDMAG +D+R+ T GYLMTF+GGAVSWQSRLQKCVALST
Sbjct: 1029 KPILVGYTDSDMAGDVDNRRXTSGYLMTFSGGAVSWQSRLQKCVALST 1071

[Close]
BLAST of CSPI06G17420 vs. NCBI nr
Match: gi|147776056|emb|CAN69911.1| (hypothetical protein VITISV_027081 [Vitis vinifera])

HSP 1 Score: 437.2 bits (1123), Expect = 2.6e-119
Identity = 233/351 (66.38%), Postives = 268/351 (76.35%), Query Frame = 1 

Query: 1    MKDEMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGI 60
            M+DEMESLH NH FELVKLPKGK ALK +W+Y++K EEHTS+P YKARL+VKGF+QKKG 
Sbjct: 698  MQDEMESLHVNHYFELVKLPKGKRALKXRWVYRVKQEEHTSQPXYKARLIVKGFNQKKGX 757

Query: 61   DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTDFLHGDLDKEIYMEQPKGFEQKGK 120
            DFDEIF+PVVKMSSIRVVLGLAASLDLE++QMDVKT FLHGDL KEIYMEQP+GF+    
Sbjct: 758  DFDEIFSPVVKMSSIRVVLGLAASLDLEIQQMDVKTAFLHGDLXKEIYMEQPEGFKFSDD 817

Query: 121  GHLMCKLKKS---LYGLKQAPRQWYKKFKNVSRMDNLKKQLSKSFAMK------------ 180
              ++  L      + G            +NVSR+DNLKKQLSKSFAMK            
Sbjct: 818  DFVILLLYVDDILIVG------------RNVSRIDNLKKQLSKSFAMKDLGPVKRILGIR 877

Query: 181  --------------EQYIEKVLERFKMSQSKLVSSPLPSHFKLISKQSPSTEKEKEDMSK 240
                          EQYIEK+L RF MS++K+VSSPL SHFKL S+ +PST+KEKEDM +
Sbjct: 878  IERDRAXKKLCMLQEQYIEKMLARFNMSKAKVVSSPLASHFKLSSRHNPSTDKEKEDMRR 937

Query: 241  VLYASTVGSLMYVMVCTRPDIAHAVGVVSRFMFNPGKQRWEAVKCIMRYLRGTSILKLTF 300
            V YAS VGSLMYVMVCTRPDIA+A+GVV RF+ NPG+  WEAVK IMRYLRGTS LKLTF
Sbjct: 938  VSYASAVGSLMYVMVCTRPDIAYAIGVVIRFLSNPGRHHWEAVKWIMRYLRGTSKLKLTF 997

Query: 301  EDGKPVLAGYTDSDMAGGLDSRKSTFGYLMTFAGGAVSWQSRLQKCVALST 323
              GKP+L GYTDSDMAG +D+R+ST GYLMTF+GG VSWQSR QKCVALST
Sbjct: 998  GGGKPILVGYTDSDMAGDVDNRRSTLGYLMTFSGGTVSWQSRQQKCVALST 1036

[Close]
BLAST of CSPI06G17420 vs. NCBI nr
Match: gi|353685495|gb|AER13172.1| (putative gag/pol polyprotein [Phaseolus vulgaris])

HSP 1 Score: 430.3 bits (1105), Expect = 3.1e-117
Identity = 227/390 (58.21%), Postives = 276/390 (70.77%), Query Frame = 1 

Query: 1    MKDEMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGI 60
            M+DEM+SLH NHTF+LVKLPK K AL+N+WIY++K E +++ PRYKARLVVKGF Q+KGI
Sbjct: 774  MQDEMKSLHDNHTFDLVKLPKDKKALENRWIYRVKQESNSTSPRYKARLVVKGFRQRKGI 833

Query: 61   DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTDFLHGDLDKEIYMEQPKGFEQKGK 120
            DF+EIF+PVVKMSSIR+VL LAA+LDLEVEQMDVKT FLHGDL++EIYM+QP GF  +GK
Sbjct: 834  DFNEIFSPVVKMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVEGK 893

Query: 121  GHLMCKLKKSLYGLKQAPRQWYKKF----------------------------------- 180
               +C+L+KSLYGLKQAPRQWYKKF                                   
Sbjct: 894  EDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYV 953

Query: 181  -------KNVSRMDNLKKQLSKSFAMK--------------------------EQYIEKV 240
                   K++S ++ LKKQLS+SFAMK                          E Y+++V
Sbjct: 954  DDILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRV 1013

Query: 241  LERFKMSQSKLVSSPLPSHFKLISKQSPSTEKEKEDMSKVLYASTVGSLMYVMVCTRPDI 300
            L+RF+M  +K+VS+PL +HFKL +KQSPS E EK DM ++ YAS VGSLMY MVCTRPDI
Sbjct: 1014 LQRFQMENAKVVSTPLATHFKLSTKQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDI 1073

Query: 301  AHAVGVVSRFMFNPGKQRWEAVKCIMRYLRGTSILKLTFEDGKPVLAGYTDSDMAGGLDS 323
            AH VG VSRFM NPG++ W AVK I+RYLRGT+ L+L F   KP L GYTDSDM G +DS
Sbjct: 1074 AHVVGTVSRFMSNPGREHWNAVKWILRYLRGTTCLRLCFGGDKPTLVGYTDSDMGGDIDS 1133

[Close]
BLAST of CSPI06G17420 vs. NCBI nr
Match: gi|1167523|dbj|BAA11674.1| (unnamed protein product [Nicotiana tabacum])

HSP 1 Score: 421.4 bits (1082), Expect = 1.5e-114
Identity = 230/390 (58.97%), Postives = 278/390 (71.28%), Query Frame = 1 

Query: 1    MKDEMESLHANHTFELVKLPKGKTALKNKWIYKIKHEEHTSKPRYKARLVVKGFSQKKGI 60
            M+DE++SLH N TFELVKLPKGK ALKNKW++K+KH+EH S PR+KARLVVKGF+Q+KGI
Sbjct: 831  MQDEIKSLHENKTFELVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLVVKGFNQRKGI 890

Query: 61   DFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTDFLHGDLDKEIYMEQPKGFEQKGK 120
            DFDEIF+PVVKM+SIR VLGLAASL+LEVEQMDVKT FLHGDL++EIYMEQP GF+QKGK
Sbjct: 891  DFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEEEIYMEQPDGFQQKGK 950

Query: 121  GHLMCKLKKSLY--------------------GLKQAPRQ---WYKKF------------ 180
               +C+L+KSLY                    G K+       + +KF            
Sbjct: 951  EDYVCRLRKSLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFIILLLYV 1010

Query: 181  -------KNVSRMDNLKKQLSKSFAMK--------------------------EQYIEKV 240
                   +NVSR+++LK+QLSK FAMK                          E+YIEKV
Sbjct: 1011 DDMLIVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDREAKKLWLSQEKYIEKV 1070

Query: 241  LERFKMSQSKLVSSPLPSHFKLISKQSPSTEKEKEDMSKVLYASTVGSLMYVMVCTRPDI 300
            L+RF M ++K VS PL +HF+L +KQSPST+ E+  M ++ YAS VGSLMY MVCTRPDI
Sbjct: 1071 LQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYASAVGSLMYAMVCTRPDI 1130

Query: 301  AHAVGVVSRFMFNPGKQRWEAVKCIMRYLRGTSILKLTFEDGKPVLAGYTDSDMAGGLDS 323
            AHAVGVVSRF+ NPGK+ W+AVK I+RYLRGTS L L F +  PVL GYTD+DMAG +DS
Sbjct: 1131 AHAVGVVSRFLSNPGKEHWDAVKWILRYLRGTSKLCLCFGEDNPVLVGYTDADMAGDVDS 1190

The following BLAST results are available for this feature:
BLAST of CSPI06G17420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC2.9e-5467.30Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME4.6e-2844.06Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
M810_ARATH4.6e-1231.18Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0... [more]
M820_ARATH1.5e-1040.23Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0... [more]
YC21B_YEAST8.5e-0629.13Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
BLAST of CSPI06G17420 vs. TrEMBL
Match NameE-valueIdentityDescription
A5C3L0_VITVI1.3e-13873.37Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007384 PE=4 SV=1[more]
A5C540_VITVI9.4e-13773.85Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024474 PE=4 SV=1[more]
A5BAF2_VITVI1.8e-11966.38Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027081 PE=4 SV=1[more]
G8DCY4_PHAVU2.2e-11758.21Putative gag/pol polyprotein OS=Phaseolus vulgaris PE=4 SV=1[more]
Q9ZRJ0_TOBAC1.0e-11458.97Retrotransposon Tto1 DNA OS=Nicotiana tabacum PE=4 SV=1[more]
BLAST of CSPI06G17420 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.12.3e-3345.64 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00810.12.6e-1331.18ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
ATMG00820.18.4e-1240.23ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)[more]
BLAST of CSPI06G17420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147816208|emb|CAN66323.1|1.9e-13873.37hypothetical protein VITISV_007384 [Vitis vinifera][more]
gi|147836424|emb|CAN77602.1|1.3e-13673.85hypothetical protein VITISV_024474 [Vitis vinifera][more]
gi|147776056|emb|CAN69911.1|2.6e-11966.38hypothetical protein VITISV_027081 [Vitis vinifera][more]
gi|353685495|gb|AER13172.1|3.1e-11758.21putative gag/pol polyprotein [Phaseolus vulgaris][more]
gi|1167523|dbj|BAA11674.1|1.5e-11458.97unnamed protein product [Nicotiana tabacum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G17420.1CSPI06G17420.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 11..156
score: 8.4
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..322
score: 9.5E
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 12..322
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G17420Watermelon (97103) v2cpiwmbB490
CSPI06G17420Watermelon (97103) v2cpiwmbB496
CSPI06G17420Wax gourdcpiwgoB541
CSPI06G17420Wax gourdcpiwgoB563
CSPI06G17420Wild cucumber (PI 183967)cpicpiB135
CSPI06G17420Cucumber (Gy14) v1cgycpiB065
CSPI06G17420Cucumber (Gy14) v1cgycpiB390
CSPI06G17420Cucurbita maxima (Rimu)cmacpiB382
CSPI06G17420Cucurbita maxima (Rimu)cmacpiB862
CSPI06G17420Cucurbita maxima (Rimu)cmacpiB924
CSPI06G17420Cucurbita moschata (Rifu)cmocpiB260
CSPI06G17420Cucurbita moschata (Rifu)cmocpiB371
CSPI06G17420Cucurbita moschata (Rifu)cmocpiB373
CSPI06G17420Cucurbita moschata (Rifu)cmocpiB904
CSPI06G17420Cucumber (Chinese Long) v2cpicuB293
CSPI06G17420Cucumber (Chinese Long) v2cpicuB313
CSPI06G17420Melon (DHL92) v3.5.1cpimeB435
CSPI06G17420Melon (DHL92) v3.5.1cpimeB500
CSPI06G17420Watermelon (Charleston Gray)cpiwcgB499
CSPI06G17420Watermelon (Charleston Gray)cpiwcgB504
CSPI06G17420Watermelon (97103) v1cpiwmB514
CSPI06G17420Watermelon (97103) v1cpiwmB557
CSPI06G17420Cucurbita pepo (Zucchini)cpecpiB153
CSPI06G17420Cucurbita pepo (Zucchini)cpecpiB325
CSPI06G17420Cucurbita pepo (Zucchini)cpecpiB628
CSPI06G17420Bottle gourd (USVL1VR-Ls)cpilsiB405
CSPI06G17420Bottle gourd (USVL1VR-Ls)cpilsiB471
CSPI06G17420Melon (DHL92) v3.6.1cpimedB434
CSPI06G17420Melon (DHL92) v3.6.1cpimedB486
CSPI06G17420Cucumber (Gy14) v2cgybcpiB149
CSPI06G17420Cucumber (Gy14) v2cgybcpiB287
CSPI06G17420Silver-seed gourdcarcpiB0083
CSPI06G17420Silver-seed gourdcarcpiB0311
CSPI06G17420Silver-seed gourdcarcpiB0739
CSPI06G17420Cucumber (Chinese Long) v3cpicucB344
CSPI06G17420Cucumber (Chinese Long) v3cpicucB355
CSPI06G17420Cucumber (Chinese Long) v3cpicucB365