CSPI06G17130 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G17130
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionBeta-D-xylosidase
LocationChr6 : 15449466 .. 15450011 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCTAAGACCCGACCCGACAACCAGCTATCCGGGTCGAACCAACCGGTTCTACAAGGGTCCGGTCATATTCCCATTCGGGTTCGGTTTAAGCTACTAAAAATTCTCCCCCTCCATTTTGGACGCCCCAACAAAAATCTCACTCTCTTTCTCAAGTTTCTCCTCCAATTCCTCCGCCGGAATCAAAGTCTCTCACACTGACTGCGCCCCGTCTTCGATCTCTCCATTCTGATCGACGTCAAGAACACCGGAACCGTCGACGGATCTCACACCACTATCGTCTTCTCAACCGCTCCAAACCAGATCTGGTCGTACTTGATCGGATTCGAAAAGGTCCATATCATGGCCTGGATCTTGAAGCGAGTTCGAATCGAAATTATGTTAAAATTACAGAGAAGTAATTAAAAAGGTAAATTGATTGTAAATTAAAAAAAAAAAATCAAATAGGTTGAAGAAGAAAATTGGAAGTAATTGTGATTATAAGATGTTTGGTATCGAAAAGTAAGATTGTGCCTCAAACGCAGCAAATTTGCGAGGGGCTATT

mRNA sequence

ATGGGCCTAAGACCCGACCCGACAACCAGCTATCCGGGTCGAACCAACCGGTTCTACAAGGGTCCGGTCATATTCCCATTCGGGTTCGTTTCTCCTCCAATTCCTCCGCCGGAATCAAAGTCTCTCACACTGACTGCGCCCCGTCTTCGATCTCTCCATTCTGATCGACGTCAAGAACACCGGAACCGTCGACGGATCTCACACCACTATCGTCTTCTCAACCGCTCCAAACCAGATCTGGTCGTACTTGATCGGATTCGAAAAGGTCCATATCATGGCCTGGATCTTGAAGCGAGTTCGAATCGAAATTATGTTAAAATTACAGAGAAGTAA

Coding sequence (CDS)

ATGGGCCTAAGACCCGACCCGACAACCAGCTATCCGGGTCGAACCAACCGGTTCTACAAGGGTCCGGTCATATTCCCATTCGGGTTCGTTTCTCCTCCAATTCCTCCGCCGGAATCAAAGTCTCTCACACTGACTGCGCCCCGTCTTCGATCTCTCCATTCTGATCGACGTCAAGAACACCGGAACCGTCGACGGATCTCACACCACTATCGTCTTCTCAACCGCTCCAAACCAGATCTGGTCGTACTTGATCGGATTCGAAAAGGTCCATATCATGGCCTGGATCTTGAAGCGAGTTCGAATCGAAATTATGTTAAAATTACAGAGAAGTAA
Homology
[Close]
BLAST of CSPI06G17130 vs. TrEMBL
Match: A0A0A0KCY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G310490 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 51/121 (42.15%), Postives = 63/121 (52.07%), Query Frame = 1 

Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGFVSPPIPPPESKSLTLTAPRLRSLHSDRRQ-- 60
           MGLRPDPTTSYPGRT RFYKGPVIFPFGF S             ++  +   H+D     
Sbjct: 1   MGLRPDPTTSYPGRTKRFYKGPVIFPFGFSSN------------SSAGINVFHTDCASVF 60

Query: 61  ------EHRNRRRIS-HHYRLLNRSKPDLV--VLDRIRKGPYHGLDLEASSNRNYVKITE 111
                 + +N   +   H  ++  + P+ +   L    K       LEASSNRNYVKITE
Sbjct: 61  DLSILIDVKNTGTVDGSHTTIVFSTAPNQIWSYLIGFEKVHIMAWILEASSNRNYVKITE 109

[Close]
BLAST of CSPI06G17130 vs. TrEMBL
Match: A0A0A0KHZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G309980 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-07
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 1 

Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGF 30
           MGLRPDP+T YPGRT RFYKGPV+FPFGF
Sbjct: 597 MGLRPDPSTGYPGRTYRFYKGPVVFPFGF 625

[Close]
BLAST of CSPI06G17130 vs. TrEMBL
Match: A0A068TTX0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00025710001 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1 

Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGF 30
           MG+RPDP+  YPGRT RFYKGPV+FPFGF
Sbjct: 593 MGMRPDPSRGYPGRTYRFYKGPVVFPFGF 621

[Close]
BLAST of CSPI06G17130 vs. NCBI nr
Match: gi|700192189|gb|KGN47393.1| (hypothetical protein Csa_6G310490 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 51/121 (42.15%), Postives = 63/121 (52.07%), Query Frame = 1 

Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGFVSPPIPPPESKSLTLTAPRLRSLHSDRRQ-- 60
           MGLRPDPTTSYPGRT RFYKGPVIFPFGF S             ++  +   H+D     
Sbjct: 1   MGLRPDPTTSYPGRTKRFYKGPVIFPFGFSSN------------SSAGINVFHTDCASVF 60

Query: 61  ------EHRNRRRIS-HHYRLLNRSKPDLV--VLDRIRKGPYHGLDLEASSNRNYVKITE 111
                 + +N   +   H  ++  + P+ +   L    K       LEASSNRNYVKITE
Sbjct: 61  DLSILIDVKNTGTVDGSHTTIVFSTAPNQIWSYLIGFEKVHIMAWILEASSNRNYVKITE 109

[Close]
BLAST of CSPI06G17130 vs. NCBI nr
Match: gi|659117006|ref|XP_008458374.1| (PREDICTED: LOW QUALITY PROTEIN: beta-D-xylosidase 1-like [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-07
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 1 

Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGF 30
           MGLRPDP+T YPGRT RFYKGPV+FPFGF
Sbjct: 594 MGLRPDPSTGYPGRTYRFYKGPVVFPFGF 622

[Close]
BLAST of CSPI06G17130 vs. NCBI nr
Match: gi|449466797|ref|XP_004151112.1| (PREDICTED: beta-D-xylosidase 1-like [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-07
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 1 

Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGF 30
           MGLRPDP+T YPGRT RFYKGPV+FPFGF
Sbjct: 597 MGLRPDPSTGYPGRTYRFYKGPVVFPFGF 625

[Close]
BLAST of CSPI06G17130 vs. NCBI nr
Match: gi|661897076|emb|CDO98788.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-06
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1 

Query: 1   MGLRPDPTTSYPGRTNRFYKGPVIFPFGF 30
           MG+RPDP+  YPGRT RFYKGPV+FPFGF
Sbjct: 593 MGMRPDPSRGYPGRTYRFYKGPVVFPFGF 621

The following BLAST results are available for this feature:
BLAST of CSPI06G17130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G17130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCY2_CUCSA1.3e-1042.15Uncharacterized protein OS=Cucumis sativus GN=Csa_6G310490 PE=4 SV=1[more]
A0A0A0KHZ3_CUCSA4.0e-0786.21Uncharacterized protein OS=Cucumis sativus GN=Csa_6G309980 PE=4 SV=1[more]
A0A068TTX0_COFCA3.4e-0679.31Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00025710001 PE=4 SV=1[more]
BLAST of CSPI06G17130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G17130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192189|gb|KGN47393.1|1.9e-1042.15hypothetical protein Csa_6G310490 [Cucumis sativus][more]
gi|659117006|ref|XP_008458374.1|5.8e-0786.21PREDICTED: LOW QUALITY PROTEIN: beta-D-xylosidase 1-like [Cucumis melo][more]
gi|449466797|ref|XP_004151112.1|5.8e-0786.21PREDICTED: beta-D-xylosidase 1-like [Cucumis sativus][more]
gi|661897076|emb|CDO98788.1|4.9e-0679.31unnamed protein product [Coffea canephora][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G17130.1CSPI06G17130.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G17130Csa6G310490Cucumber (Chinese Long) v2cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G17130Melon (DHL92) v3.6.1cpimedB434
CSPI06G17130Melon (DHL92) v3.6.1cpimedB486
CSPI06G17130Cucumber (Gy14) v2cgybcpiB149
CSPI06G17130Cucumber (Gy14) v2cgybcpiB287
CSPI06G17130Silver-seed gourdcarcpiB0082
CSPI06G17130Silver-seed gourdcarcpiB0083
CSPI06G17130Silver-seed gourdcarcpiB0311
CSPI06G17130Silver-seed gourdcarcpiB0739
CSPI06G17130Cucumber (Chinese Long) v3cpicucB344
CSPI06G17130Cucumber (Chinese Long) v3cpicucB355
CSPI06G17130Cucumber (Chinese Long) v3cpicucB365
CSPI06G17130Watermelon (97103) v2cpiwmbB490
CSPI06G17130Watermelon (97103) v2cpiwmbB496
CSPI06G17130Wax gourdcpiwgoB551
CSPI06G17130Wax gourdcpiwgoB563
CSPI06G17130Wild cucumber (PI 183967)cpicpiB135
CSPI06G17130Cucumber (Gy14) v1cgycpiB490
CSPI06G17130Cucumber (Gy14) v1cgycpiB390
CSPI06G17130Cucurbita maxima (Rimu)cmacpiB382
CSPI06G17130Cucurbita maxima (Rimu)cmacpiB862
CSPI06G17130Cucurbita maxima (Rimu)cmacpiB924
CSPI06G17130Cucurbita moschata (Rifu)cmocpiB260
CSPI06G17130Cucurbita moschata (Rifu)cmocpiB371
CSPI06G17130Cucurbita moschata (Rifu)cmocpiB904
CSPI06G17130Cucumber (Chinese Long) v2cpicuB293
CSPI06G17130Melon (DHL92) v3.5.1cpimeB435
CSPI06G17130Melon (DHL92) v3.5.1cpimeB461
CSPI06G17130Melon (DHL92) v3.5.1cpimeB500
CSPI06G17130Watermelon (Charleston Gray)cpiwcgB437
CSPI06G17130Watermelon (Charleston Gray)cpiwcgB499
CSPI06G17130Watermelon (Charleston Gray)cpiwcgB504
CSPI06G17130Watermelon (97103) v1cpiwmB514
CSPI06G17130Watermelon (97103) v1cpiwmB557
CSPI06G17130Cucurbita pepo (Zucchini)cpecpiB153
CSPI06G17130Cucurbita pepo (Zucchini)cpecpiB325
CSPI06G17130Cucurbita pepo (Zucchini)cpecpiB628
CSPI06G17130Bottle gourd (USVL1VR-Ls)cpilsiB405
CSPI06G17130Bottle gourd (USVL1VR-Ls)cpilsiB471