CSPI06G15750 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G15750
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Non-LTR retroelement reverse transcriptase-like protein
Location	Chr6 : 14131151 .. 14132788 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCCATTATGATTAATGGATCGTTGGAAGAGTTTTTCCATGGAAGGAAAGGTCTTAGACAAGGTGATCCTTTATTCTGGTTCTTATTTGTGATGGTCATGGAGGTGCTATCTCGCATGTTGAACAGCCCGCCTCAGAATTTTCAATTCCACCAGTTTTCTGAGAAGGTTAGGTTAACTCATCTTACTTTTGCAGATGATCTGATGATCTTTTGTGTTGCTGATAATTATTCTATGAGTTTCATAAAAGAGACTAGTCAAAGGTTTGGTGAGCTATTGGGGTTGTTTGCTAATCTTAGTAAAAGCTCTATTTTTCTTATGGAGGTTAATCGTGTGGAAGCTTCTCAACTAGCTGCGAACATGGGTTTTACCATTGGTCACCTCCCTATTCGCTATCTTGGTCTTCCTGTTCTCTCAGGAAGGTTACGGAGCTCTGATTGTGATCCCCTTATTCAGCAAATTACCAGTCGTATTCGATCTTGGTGTGCTAGAGTGTTATCTTTTGCAGGTAGACTTCAGCTTCTTCGCTCAGTTCTTAGGAGTCTTTAGGTTTATTGGGCTAGTGTGTTCGTGCTTCTTGTGAAAGTCCACAGAGACGTTGATAATATTTTGAGGTCTTATCTGTGGAGAGGTAAGGAGGAGGGTAGAGGTGGAGCAAAAGTTTCCTAGGATGAGGTTTATCTTCCTTTTGATGAAGGAGGTCTTGCTATTCGTGATGGATCGTCTTGGAATATAGCAAGCACGATGAAGATCTTATGGTTGCTGCTAGTTAAATCTTGTAGTTTGTGCGTTGCTTGGGTGGAAGCTTATATCCTTAAAGAGAGATCGATGCTGGGGTTGGACGATCTTGGTGTTTTAGGGCCATCTTGCGTAAGTGGGATATCCTTAAAGATCATGTTAAGATGGAGATGGGCGATGGCAGGAGGTGTAGAGTGTGGTTGGATCCATGGATTCAAGGTGGCTCGATTATCCAGCGGTTTGGGGAAAGGGTGATCTATGATGCGGGTAGTCGGCAGGATGCGAGGCTTGTGGATTTCATGGGTCTGGATTGTGAATGGAGGTGGCTGCTTGTTTCTTTGGATTTGATGGACATTTGGGATAGGATTCGGGAAGTTAGGTCGTGGCCGAGTGTTGAGGATAAGTGAGTCTTGGTGCTGGGTAGTCATGATAGTTTTTCGATAGATAGTGCATGGAAGACTATTCGTCCTCATAGTAGTAGGGTTGACTGGTCGGTTTACTGTAGGGTGGGGGAAATATTCCTAAGCACTCCTTTTGTGCTTGGTTGGCTATCAGGGATAGGTTGGGTACTAGGGATAGGTTAAGTCGGTGGGATAGGTCGATTCTTTTATCTTGTATTCTTTGTGGGGGAAACTCTGAGTCTCGTGATCATTTGTTTTTTTCTTGTCCTTTTGGGTGGAAAATTTTGGTCTAGAATCCTTTTGATTATGTCATCTTCTCATAGGATCAGGTATTAGGGGGGTTGAGTTATCTTGGATTTGCCATCAGGGCATTGAGAAGGGAGTGAGGAAAAAGTTATGGCGTCTTCTCTGGTGTGCTATGATTTATTTCATTTGGCAGGAGCGTAATCATCGTCTTCATGGAGGTACAGTTCGTGGGTCTATGGTTATTTTCTAG

mRNA sequence

ATGTTCTCCATTATGATTAATGGATCGTTGGAAGAGTTTTTCCATGGAAGGAAAGGTCTTAGACAAGGTGATCCTTTATTCTGGTTCTTATTTGTGATGGTCATGGAGGTGCTATCTCGCATGTTGAACAGCCCGCCTCAGAATTTTCAATTCCACCAGTTTTCTGAGAAGGTTAGGTTAACTCATCTTACTTTTGCAGATGATCTGATGATCTTTTGTGTTGCTGATAATTATTCTATGAGTTTCATAAAAGAGACTAGTCAAAGGTTTGGTGAGCTATTGGGGTTGTTTGCTAATCTTAGTAAAAGCTCTATTTTTCTTATGGAGGTTAATCGTGTGGAAGCTTCTCAACTAGCTGCGAACATGGGTTTTACCATTGGTCACCTCCCTATTCGCTATCTTGGTCTTCCTGTTCTCTCAGGAAGGTTACGGAGCTCTGATTGTGATCCCCTTATTCAGCAAATTACCAGTCGTATTCGATCTTGGTGTGCTAGAGTGTTATCTTTTGCAGGTAGACTTCAGCTTCTTCGCTCAGATGAGGTTTATCTTCCTTTTGATGAAGGAGGTCTTGCTATTCGTGATGGATCGTCTTGGAATATAGCAAGCACGATGAAGATCTTATGGGCCATCTTGCGTAAGTGGGATATCCTTAAAGATCATGTTAAGATGGAGATGGGCGATGGCAGGAGGTGTAGAGTGTGGTTGGATCCATGGATTCAAGGTGGCTCGATTATCCAGCGGTTTGGGGAAAGGGTGATCTATGATGCGGGTAGTCGGCAGGATGCGAGGCTTGTGGATTTCATGGGTCTGGATTGTGAATGGAGGTGGCTGCTTGTTTCTTTGGATTTGATGGACATTTGGGATAGGATTCGGGAAGTTAGGTCGTGGCCGAGTGTTGAGGATAAGGATAGGTTGGGTACTAGGGATAGGTTAAGTCGGTGGGATAGGTCGATTCTTTTATCTTGTATTCTTTGTGGGGGAAACTCTGAGTCTCGATCAGGTATTAGGGGGGTTGAGTTATCTTGGATTTGCCATCAGGGCATTGAGAAGGGAGTGAGGAAAAAGTTATGGCGTCTTCTCTGGTGTGCTATGATTTATTTCATTTGGCAGGAGCGTAATCATCGTCTTCATGGAGGTACAGTTCGTGGGTCTATGGTTATTTTCTAG

Coding sequence (CDS)

ATGTTCTCCATTATGATTAATGGATCGTTGGAAGAGTTTTTCCATGGAAGGAAAGGTCTTAGACAAGGTGATCCTTTATTCTGGTTCTTATTTGTGATGGTCATGGAGGTGCTATCTCGCATGTTGAACAGCCCGCCTCAGAATTTTCAATTCCACCAGTTTTCTGAGAAGGTTAGGTTAACTCATCTTACTTTTGCAGATGATCTGATGATCTTTTGTGTTGCTGATAATTATTCTATGAGTTTCATAAAAGAGACTAGTCAAAGGTTTGGTGAGCTATTGGGGTTGTTTGCTAATCTTAGTAAAAGCTCTATTTTTCTTATGGAGGTTAATCGTGTGGAAGCTTCTCAACTAGCTGCGAACATGGGTTTTACCATTGGTCACCTCCCTATTCGCTATCTTGGTCTTCCTGTTCTCTCAGGAAGGTTACGGAGCTCTGATTGTGATCCCCTTATTCAGCAAATTACCAGTCGTATTCGATCTTGGTGTGCTAGAGTGTTATCTTTTGCAGGTAGACTTCAGCTTCTTCGCTCAGATGAGGTTTATCTTCCTTTTGATGAAGGAGGTCTTGCTATTCGTGATGGATCGTCTTGGAATATAGCAAGCACGATGAAGATCTTATGGGCCATCTTGCGTAAGTGGGATATCCTTAAAGATCATGTTAAGATGGAGATGGGCGATGGCAGGAGGTGTAGAGTGTGGTTGGATCCATGGATTCAAGGTGGCTCGATTATCCAGCGGTTTGGGGAAAGGGTGATCTATGATGCGGGTAGTCGGCAGGATGCGAGGCTTGTGGATTTCATGGGTCTGGATTGTGAATGGAGGTGGCTGCTTGTTTCTTTGGATTTGATGGACATTTGGGATAGGATTCGGGAAGTTAGGTCGTGGCCGAGTGTTGAGGATAAGGATAGGTTGGGTACTAGGGATAGGTTAAGTCGGTGGGATAGGTCGATTCTTTTATCTTGTATTCTTTGTGGGGGAAACTCTGAGTCTCGATCAGGTATTAGGGGGGTTGAGTTATCTTGGATTTGCCATCAGGGCATTGAGAAGGGAGTGAGGAAAAAGTTATGGCGTCTTCTCTGGTGTGCTATGATTTATTTCATTTGGCAGGAGCGTAATCATCGTCTTCATGGAGGTACAGTTCGTGGGTCTATGGTTATTTTCTAG

Homology

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BLAST of CSPI06G15750 vs. Swiss-Prot
Match: LORF2_HUMAN (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.7e-14
Identity = 52/177 (29.38%), Postives = 87/177 (49.15%), Query Frame = 1


Query: 3   SIMINGSLEEFFHGRKGLRQGDPLFWFLFVMVMEVLSRMLNSPPQNFQFHQFSEKVRLTH 62
           +I++NG   E F  + G RQG PL   LF +V+EVL+R +    +        E+V+L+ 
Sbjct: 640 NIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLS- 699

Query: 63  LTFADDLMIFCVADNYSMSFIKETSQRFGELLGLFANLSKSSIFLMEVNRVEASQLAANM 122
             FADD++++      S   + +    F ++ G   N+ KS  FL   NR   SQ+   +
Sbjct: 700 -LFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMGEL 759

Query: 123 GFTIGHLPIRYLGLPVLSG--RLRSSDCDPLIQQITSRIRSWCARVLSFAGRLQLLR 178
            FTI    I+YLG+ +      L   +  PL+++I      W     S+ GR+ +++
Sbjct: 760 PFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVK 814

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BLAST of CSPI06G15750 vs. Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-09
Identity = 46/177 (25.99%), Postives = 85/177 (48.02%), Query Frame = 1


Query: 3   SIMINGSLEEFFHGRKGLRQGDPLFWFLFVMVMEVLSRMLNSPPQNFQFHQFSEKVRLTH 62
           +I++NG   + F  R G RQG PL   LF +VMEVL+  +         H  SE+++L+ 
Sbjct: 639 NIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIREEKAIKGIHIGSEEIKLS- 698

Query: 63  LTFADDLMIFCVADNYSMSFIKETSQRFGELLGLFANLSKSSIFLMEVNRVEASQLAANM 122
             FADD++++      S + + E  + +  + G   N  KS  F+   N      +  ++
Sbjct: 699 -LFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSI 758

Query: 123 GFTIGHLPIRYLGLPVLSG--RLRSSDCDPLIQQITSRIRSWCARVLSFAGRLQLLR 178
            FT+    ++YLG+ +      L   + + L ++I   +  W     S+ GR+ +++
Sbjct: 759 PFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVK 813

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BLAST of CSPI06G15750 vs. TrEMBL
Match: Q1KUN8_9ROSI (Putative uncharacterized protein OS=Tarenaya spinosa PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.9e-37
Identity = 84/177 (47.46%), Postives = 111/177 (62.71%), Query Frame = 1


Query: 2   FSIMINGSLEEFFHGRKGLRQGDPLFWFLFVMVMEVLSRMLN--SPPQNFQFHQFSEKVR 61
           FS+ ING L  +F GR+GLRQGDPL  +LF+M MEVLSRML+  +       H       
Sbjct: 85  FSVSINGELAGYFKGRRGLRQGDPLSPYLFIMSMEVLSRMLDRCAAESRLSLHPKCHSPV 144

Query: 62  LTHLTFADDLMIFCVADNYSMSFIKETSQRFGELLGLFANLSKSSIFLMEVNRVEASQLA 121
           +THL FADD+MIF   +  S+  +K T   F    GL+ N  K+ IFL  +N  EAS L 
Sbjct: 145 ITHLAFADDIMIFTSGETRSLLEVKNTLDSFSRASGLYLNTEKTEIFLRGLNGTEASTLC 204

Query: 122 ANMGFTIGHLPIRYLGLPVLSGRLRSSDCDPLIQQITSRIRSWCARVLSFAGRLQLL 177
           A +GFT G+LP+RYLG+ +   RL  SD  PL+ ++ ++I SW  R LS+AGRLQL+
Sbjct: 205 AVIGFTRGYLPVRYLGVSLSPVRLTKSDYQPLLDRVKAKINSWTTRYLSYAGRLQLV 261

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BLAST of CSPI06G15750 vs. TrEMBL
Match: F4NCG1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.5e-35
Identity = 78/179 (43.58%), Postives = 115/179 (64.25%), Query Frame = 1


Query: 2   FSIMINGSLEEFFHGRKGLRQGDPLFWFLFVMVMEVLSRMLNS--PPQNFQFHQFSEKVR 61
           +S+++NG   + F  RKGLRQGDP+  FLF + ME LSR L       +F FH   E++ 
Sbjct: 623 YSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERLN 682

Query: 62  LTHLTFADDLMIFCVADNYSMSFIKETSQRFGELLGLFANLSKSSIFLMEVNRVEASQLA 121
           +THL FADDL++FC AD  S+  +    Q+F    GL A+  KS+I+   V+   A +LA
Sbjct: 683 ITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETARELA 742

Query: 122 ANMGFTIGHLPIRYLGLPVLSGRLRSSDCDPLIQQITSRIRSWCARVLSFAGRLQLLRS 179
             +   +G LP RYLG+P+ S +L  + C PL++ IT+R ++W A++LS+AGRLQL++S
Sbjct: 743 DYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKS 801

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BLAST of CSPI06G15750 vs. TrEMBL
Match: F4NCG3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.7e-34
Identity = 83/179 (46.37%), Postives = 114/179 (63.69%), Query Frame = 1


Query: 2   FSIMINGSLEEFFHGRKGLRQGDPLFWFLFVMVMEVLSRMLNSPPQN--FQFHQFSEKVR 61
           +SI++NG     F  +KGLRQGDPL  FLF + ME LSR + +  ++  F FH   E+++
Sbjct: 626 YSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIK 685

Query: 62  LTHLTFADDLMIFCVADNYSMSFIKETSQRFGELLGLFANLSKSSIFLMEVNRVEASQLA 121
           LTHL FADDL++F  AD  S+S I      F +  GL A++ KS I+   V   EA QLA
Sbjct: 686 LTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLA 745

Query: 122 ANMGFTIGHLPIRYLGLPVLSGRLRSSDCDPLIQQITSRIRSWCARVLSFAGRLQLLRS 179
             +   IG LP RYLG+P+ S +L  S C PLI +IT+R + W A +LS+AGRLQL+++
Sbjct: 746 DRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKT 804

[Close]

BLAST of CSPI06G15750 vs. TrEMBL
Match: B2BXQ7_9ROSI (RT6non-ltr OS=Tarenaya spinosa GN=RT6non-ltr PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.7e-34
Identity = 87/215 (40.47%), Postives = 128/215 (59.53%), Query Frame = 1


Query: 1   MFSIMINGSLEEFFHGRKGLRQGDPLFWFLFVMVMEVLSRMLNSPPQ--NFQFHQFSEKV 60
           MFSI ING L   F G++GLRQGDPL  +LF++ MEVLSR L+        Q H      
Sbjct: 1   MFSININGELTGLFKGKRGLRQGDPLSPYLFIIAMEVLSRKLDQAASIGQLQLHSKCANP 60

Query: 61  RLTHLTFADDLMIFCVADNYSMSFIKETSQRFGELLGLFANLSKSSIFLMEVNRVEASQL 120
            LTHL FADDL+IF  A   SM  ++     FG   GL  N  K  +FL  +   E  +L
Sbjct: 61  LLTHLIFADDLVIFSKASRQSMQAVQNCLNWFGRNSGLEVNTGKCEMFLGGLTDSEKQEL 120

Query: 121 AANMGFTIGHLPIRYLGLPVLSGRLRSSDCDPLIQQITSRIRSWCARVLSFAGRLQLLRS 180
           ++ MG T+G+ P++YLGLPV + RL  +D +PL+++I +++ +W +++LS+AG++QL+ S
Sbjct: 121 SSCMGITLGNFPMKYLGLPVNTHRLTKADYEPLLEKIRAKVSNWSSKLLSYAGKIQLV-S 180

Query: 181 DEVYLPFDEGGLAIRDGSSWNIAS--TMKILWAIL 212
             +Y      G+     SSW+  S  T ++ W I+
Sbjct: 181 VVIY------GMV----SSWSQTSTGTARVAWNII 204

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BLAST of CSPI06G15750 vs. TrEMBL
Match: A0A0V0IYZ4_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 8.0e-34
Identity = 76/178 (42.70%), Postives = 114/178 (64.04%), Query Frame = 1


Query: 2   FSIMINGSLEEFFHGRKGLRQGDPLFWFLFVMVMEVLSRMLNS-PPQNFQFHQFSEKVRL 61
           +SIMINGS  + F  ++G+RQGDPL  +LFV+ ME  +R+L S     F+FH    K ++
Sbjct: 272 YSIMINGSPSKPFQAKRGVRQGDPLSPYLFVLAMEYFTRLLKSLRDSKFKFHPRCHKQQI 331

Query: 62  THLTFADDLMIFCVADNYSMSFIKETSQRFGELLGLFANLSKSSIFLMEVNRVEASQLAA 121
             L+FADDL++FC  D  S   + E  Q+F ++ GL AN +KS ++   V++ E   +  
Sbjct: 332 IQLSFADDLLLFCRGDVQSTVLLYECFQQFSQVSGLIANQAKSCVYFGGVSKQEQQLILQ 391

Query: 122 NMGFTIGHLPIRYLGLPVLSGRLRSSDCDPLIQQITSRIRSWCARVLSFAGRLQLLRS 179
           + GFT G+LP RYLG+P+ S +L  S C PL+ ++   I +W  + LS+AGRLQL++S
Sbjct: 392 HTGFTKGNLPFRYLGVPLSSKKLSISQCQPLLDRMLGIINTWTVKFLSYAGRLQLVQS 449

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BLAST of CSPI06G15750 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 67.0 bits (162), Expect = 2.9e-11
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1


Query: 124 FTIGHLPIRYLGLPVLSGRLRSSDCDPLIQQITSRIRSWCARVLSFAGRLQLLRS 179
           F  G LP+RYLGLP+L+ ++ +SD  PL+++I  RI  W AR LSFAGRLQL+ S
Sbjct: 18  FASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 72

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BLAST of CSPI06G15750 vs. TAIR10
Match: AT4G04650.1 (AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 52.0 bits (123), Expect = 9.7e-07
Identity = 33/107 (30.84%), Postives = 48/107 (44.86%), Query Frame = 1


Query: 303 DRLGTRDRLSRWDRSILLSCILCGGNSESRSGI------RGVEL---------------- 362
           +RL TRDRL  W  SI   C+LC  + +SR+ +       GV                  
Sbjct: 152 NRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPAQLM 211

Query: 363 ---SWICHQGIEKGVRKKLWRLLWCAMIYFIWQERNHRLHGGTVRGS 385
              +W+     EK +   + RL + + +Y IW+ERN RLH G  R +
Sbjct: 212 DCLNWLLSPSREKNI-CLIIRLAFHSCVYAIWRERNQRLHSGVSRST 257

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BLAST of CSPI06G15750 vs. NCBI nr
Match: gi|659102432|ref|XP_008452126.1| (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])

HSP 1 Score: 368.2 bits (944), Expect = 1.7e-98
Identity = 213/471 (45.22%), Postives = 257/471 (54.56%), Query Frame = 1


Query: 17  RKGLRQGDPLFWFLFVMVMEVLSRMLNSPPQNFQFHQFSEKVRLTHLTFADDLMIFCVAD 76
           +KG+RQGDPL  FLFVMVMEVLSRMLN  PQ+FQFH   EK                   
Sbjct: 497 KKGVRQGDPLSLFLFVMVMEVLSRMLNKIPQSFQFHHRCEK------------------- 556

Query: 77  NYSMSFIKETSQRFGELLGLFANLSKSSIFLMEVNRVEASQLAANMGFTIGHLPIRYLGL 136
                       RFGEL GLFAN  KSSIF+  VN   AS+LAA MGF  G+LP+RYLGL
Sbjct: 557 ------------RFGELSGLFANPRKSSIFIAGVNNENASRLAACMGFVRGNLPVRYLGL 616

Query: 137 PVLSGRLRSSDCDPLIQQITSRIRSWCARVLSFAGRLQLL-------------------- 196
           P+L+GRLRS+DC PLIQ+ITSRIRS  ARVLSFAGRLQL+                    
Sbjct: 617 PLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAIVFVLPAY 676

Query: 197 -----------------------------RSDEVYLPFDEGGLAIRDGSSWNIASTMKIL 256
                                         S  +++ + E    ++  S W++ S +   
Sbjct: 677 VHNEGGLGIRDGTAWKFASTLKILWLMLTNSGSLWVAWVEA-YVLKGRSLWDVDSRVGRS 736

Query: 257 W---AILRKWDILKDHVKMEMGDGRRCRVWLDPWIQGGSIIQRFGERVIYDAGSRQDARL 316
           W   AILRK + LK HV+M++G+G RCRVWLDPW+Q G+I++R GERV+YDA SR++A L
Sbjct: 737 WCLRAILRKQEKLKQHVRMKVGNGNRCRVWLDPWLQRGAILERVGERVLYDAASRREASL 796

Query: 317 VDFMGLDCEWRWLLVSLDLMDIWDRIR---------------------EVRSWPSVEDKD 376
            +F+G D EW W      +   W+ IR                        +W ++  KD
Sbjct: 797 SNFIGPDGEWLWPRGGFSIASAWEAIRPRGGRVLWDGLLWGGGNIPKHSFCAWLAI--KD 856

Query: 377 RLGTRDRLSRWDRSILLSCILCGGNSESRS--------------------------GIRG 389
           RLGTRDR  RWD S+ LSCILC G  ESR                           G  G
Sbjct: 857 RLGTRDRFHRWDSSVPLSCILCEGGMESRDHLFFSCPFGGDVWSRVLRIMASSHRIGHWG 916

[Close]

BLAST of CSPI06G15750 vs. NCBI nr
Match: gi|659121154|ref|XP_008460525.1| (PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 1.6e-64
Identity = 134/186 (72.04%), Postives = 149/186 (80.11%), Query Frame = 1


Query: 1   MFSIMINGSLEEFFHGRKGLRQGDPLFWFLFVMVMEVLSRMLNSPPQNFQFHQFSEKVRL 60
           MFSIMINGSLE FFHGRKG+RQGDPL  FLFVMVMEVLSRMLN  PQ+F FH   EKV+L
Sbjct: 1   MFSIMINGSLEGFFHGRKGVRQGDPLSTFLFVMVMEVLSRMLNKIPQSFHFHHRCEKVKL 60

Query: 61  THLTFADDLMIFCVADNYSMSFIKETSQRFGELLGLFANLSKSSIFLMEVNRVEASQLAA 120
           THLTFADDLMIFC A+  S+ FI+E  Q+FGEL GLFAN  KSSIF+  VN   AS LA 
Sbjct: 61  THLTFADDLMIFCAANEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAT 120

Query: 121 NMGFTIGHLPIRYLGLPVLSGRLRSSDCDPLIQQITSRIRSWCARVLSFAGRLQL----L 180
            MGF  G+L +RYLGLP+L+GRLRS+D  PLIQ+ITSRIRSW ARVLSFAGRLQL    L
Sbjct: 121 CMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVL 180

Query: 181 RSDEVY 183
           RS +VY
Sbjct: 181 RSFQVY 186

[Close]

BLAST of CSPI06G15750 vs. NCBI nr
Match: gi|659126450|ref|XP_008463188.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 226.5 bits (576), Expect = 8.1e-56
Identity = 118/170 (69.41%), Postives = 136/170 (80.00%), Query Frame = 1


Query: 17  RKGLRQGDPLFWFLFVMVMEVLSRMLNSPPQNFQFHQFSEKVRLTHLTFADDLMIFCVAD 76
           +KG+RQGDPL  FLFVMVMEVLSRMLN  PQ+FQFH   EKV+LTHLTFADDLMIFC AD
Sbjct: 73  KKGVRQGDPLSPFLFVMVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAAD 132

Query: 77  NYSMSFIKETSQRFGELLGLFANLSKSSIFLMEVNRVEASQLAANMGFTIGHLPIRYLGL 136
             S+ FI++  Q+FGEL GLFAN  KSSIF+  VN   AS LAA MGF  G+L +RYLGL
Sbjct: 133 ELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVRYLGL 192

Query: 137 PVLSGRLRSSDCDPLIQQITSRIRSWCARVLSFAGRLQL----LRSDEVY 183
           P+L+GRL S+DC PLIQ+ITS+IRSW ARVLSFAGR+QL    LRS +VY
Sbjct: 193 PLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVY 242

[Close]

BLAST of CSPI06G15750 vs. NCBI nr
Match: gi|731374181|ref|XP_010666883.1| (PREDICTED: uncharacterized protein LOC104884000 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 177.6 bits (449), Expect = 4.3e-41
Identity = 93/236 (39.41%), Postives = 138/236 (58.47%), Query Frame = 1


Query: 2    FSIMINGSLEEFFHGRKGLRQGDPLFWFLFVMVMEVLSRMLN--SPPQNFQFHQFSEKVR 61
            FSIM+NG++  FF  ++GLRQGDP+   LFV+ M+ L+R L      + F+FH   ++++
Sbjct: 1015 FSIMLNGAITGFFGAQRGLRQGDPMSPLLFVVGMDYLARTLQLVHEQEGFKFHSLCKELK 1074

Query: 62   LTHLTFADDLMIFCVADNYSMSFIKETSQRFGELLGLFANLSKSSIFLMEVNRVEASQLA 121
            LTHL FADDL++FC  D  S+ ++ +  Q F +  GL  N  KS I+   VN  +  ++ 
Sbjct: 1075 LTHLCFADDLLLFCNGDFRSIYYLLQGFQMFSDASGLEVNKQKSEIYFAGVNENDMQRVV 1134

Query: 122  ANMGFTIGHLPIRYLGLPVLSGRLRSSDCDPLIQQITSRIRSWCARVLSFAGRLQLLRS- 181
               GF  G LP RYLG+P+ + +L+ SDC+ L+ ++T RI++W +R LSFA R QL+ S 
Sbjct: 1135 DVSGFAKGALPFRYLGVPITTRKLQKSDCNILMSKMTGRIKTWSSRHLSFAARTQLINSM 1194

Query: 182  -----------------DEVYLPFDEGGLAIRDGSSWNIASTMKILWAILRKWDIL 218
                              ++  P   GGLA RD   WNIA+  K+ W+I +K D L
Sbjct: 1195 LSVDWHYNNTKAGAIAWSDLCKPKKAGGLAFRDVLKWNIAAVSKLAWSIAQKKDNL 1250

[Close]

BLAST of CSPI06G15750 vs. NCBI nr
Match: gi|923902634|ref|XP_013721579.1| (PREDICTED: uncharacterized protein LOC106425393 [Brassica napus])

HSP 1 Score: 176.8 bits (447), Expect = 7.4e-41
Identity = 120/429 (27.97%), Postives = 197/429 (45.92%), Query Frame = 1


Query: 2   FSIMINGSLEEFFHGRKGLRQGDPLFWFLFVMVMEVLSRMLNSPPQN--FQFHQFSEKVR 61
           +++  NG++  +F GR+GLRQGDPLF +LFV+ M  LS MLN    +   ++H  + K++
Sbjct: 403 YTLGYNGTINGYFKGRRGLRQGDPLFPYLFVIAMNCLSLMLNKMATDGYMEYHHNNRKIK 462

Query: 62  LTHLTFADDLMIFCVADNYSMSFIKETSQRFGELLGLFANLSKSSIFLMEVNRVEASQLA 121
           LTHL+FADDL+IF      S+  + +T   F     L  +  K+S F   ++  E S + 
Sbjct: 463 LTHLSFADDLLIFIEGSIESVQAVLQTLHEFELRSNLAVSYQKTSFFATCLSEAEISAIQ 522

Query: 122 ANMGFTIGHLPIRYLGLPVLSGRLRSSDCDPLIQQITSRIRSWCARVLSFAGRLQLLRS- 181
            + G   G LP++YLG+P+ + +L  ++C+PL+QQ+ +R  SW A+ LSFAGRL L+++ 
Sbjct: 523 VSTGMKCGTLPMKYLGVPLCTTKLTLANCEPLLQQVKARFSSWPAKALSFAGRLLLIKTG 582

Query: 182 ------------DEVYLPFDEGGLAIRDGSSWNIASTMKILWAILRKWDILKDHVKMEMG 241
                       D V L  + GGL ++    WN A ++K     L +  I    V +   
Sbjct: 583 ETEGHHSARVAWDRVTLTKEHGGLGVKYLLGWNRACSLKT--EELLEVQIHLTTVTLSQE 642

Query: 242 DGRRCRVWLDPWIQGGSIIQRFGERVIYDAGSRQDARLVDFMGLDCEWRWLLVSLDLMDI 301
           +          W+  G    +F    +Y A  + D  +V +  L               +
Sbjct: 643 ENSY------EWVINGKSRDKFSTGSVY-AYLKGDVAIVAWSSL---------------V 702

Query: 302 WDRI----REVRSWPSVEDKDRLGTRDRLSRWDRSILLSCILCGGNSESRS--------- 361
           W       +   +W  ++  ++  T+DRL  W   +   C LC    ESR+         
Sbjct: 703 WSSYGIPRQNFLTWLVIQ--NQCPTKDRLLSWGLQVDPLCPLCNVGQESRNHLFFDCSFT 762

Query: 362 ----GIRGVELSWICHQGIEKGV-----------RKKLWRLLWCAMIYFIWQERNHRLHG 388
                +      +      ++ V            ++L+ L W + IY IW+ERN R+H 
Sbjct: 763 FQICSVMAARCGFQARPNWDETVISLQNFRGNKNLRRLFLLAWQSSIYSIWKERNMRIHQ 805

The following BLAST results are available for this feature:

BLAST of CSPI06G15750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LORF2_HUMAN	7.7e-14	29.38	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1	[more]
LIN1_NYCCO	1.1e-09	25.99	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1	[more]

BLAST of CSPI06G15750 vs. TrEMBL


Match Name	E-value	Identity	Description
Q1KUN8_9ROSI	5.9e-37	47.46	Putative uncharacterized protein OS=Tarenaya spinosa PE=4 SV=1	[more]
F4NCG1_BETVU	2.5e-35	43.58	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1	[more]
F4NCG3_BETVU	2.7e-34	46.37	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1	[more]
B2BXQ7_9ROSI	2.7e-34	40.47	RT6non-ltr OS=Tarenaya spinosa GN=RT6non-ltr PE=4 SV=1	[more]
A0A0V0IYZ4_SOLCH	8.0e-34	42.70	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of CSPI06G15750 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24255.1	2.9e-11	56.36	RNA-directed DNA polymerase (reverse transcriptase)-related family p...	[more]
AT4G04650.1	9.7e-07	30.84	RNA-directed DNA polymerase (reverse transcriptase)-related family p...	[more]

BLAST of CSPI06G15750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102432\|ref\|XP_008452126.1\|	1.7e-98	45.22	PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]	[more]
gi\|659121154\|ref\|XP_008460525.1\|	1.6e-64	72.04	PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucum...	[more]
gi\|659126450\|ref\|XP_008463188.1\|	8.1e-56	69.41	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|731374181\|ref\|XP_010666883.1\|	4.3e-41	39.41	PREDICTED: uncharacterized protein LOC104884000 [Beta vulgaris subsp. vulgaris]	[more]
gi\|923902634\|ref\|XP_013721579.1\|	7.4e-41	27.97	PREDICTED: uncharacterized protein LOC106425393 [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G15750.1	CSPI06G15750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..137 score: 5.5
IPR000477	Reverse transcriptase domain	PROFILE	PS50878	RT_POL	coord: 1..138 score: 11
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 4..171 score: 5.6
None	No IPR available	PANTHER	PTHR19446:SF368	SUBFAMILY NOT NAMED	coord: 4..171 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G15750	Cucurbita pepo (Zucchini)	cpecpiB152
CSPI06G15750	Bottle gourd (USVL1VR-Ls)	cpilsiB402
CSPI06G15750	Melon (DHL92) v3.6.1	cpimedB421
CSPI06G15750	Silver-seed gourd	carcpiB0080
CSPI06G15750	Cucumber (Chinese Long) v3	cpicucB319
CSPI06G15750	Watermelon (97103) v2	cpiwmbB503
CSPI06G15750	Wax gourd	cpiwgoB554
CSPI06G15750	Cucurbita maxima (Rimu)	cmacpiB378
CSPI06G15750	Cucurbita moschata (Rifu)	cmocpiB368
CSPI06G15750	Melon (DHL92) v3.5.1	cpimeB425
CSPI06G15750	Watermelon (Charleston Gray)	cpiwcgB480
CSPI06G15750	Watermelon (Charleston Gray)	cpiwcgB511
CSPI06G15750	Watermelon (97103) v1	cpiwmB551
CSPI06G15750	Watermelon (97103) v1	cpiwmB567