CSPI06G15510 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G15510
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionProtein of unknown function (DUF640)
LocationChr6 : 13800476 .. 13804926 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGAAGAAGAAGAAGAAGAAGAAGAATATGTCCGGTGAAGGAGTGGTAGGAGATGGGTCAAGCAAAGAATACGGAGAAGGATCGTCGAAGTCGCCACCAAGGGCAACAACCCCAAGTCGTTACGAGTCACAAAAACGGCGAGATTGGAACACGTTTGGGCAATACTTGAAGAATCAAAGACCAGCAGTGGCACTATCTCAATGCAACTTCAACCATGTATTGGAGTTCTTAAGATACTTGGATCAATTTGGGAAGACAAAAGTTCATGTACAAGGTTGTATGTTTTACGGTCACCCAGAACCACCTTCCCCTTGTACCTGCCCGTTAAAACAAGCTTGGGGTAGCCTTGATGCTTTAATAGGGAGATTAAGGGCGGCTTATGAAGAAAACGGTGGTTCCCCTGAAACTAATCCTTTTGCAACTGCTTCTATAAGGCTTTATTTAAGACAAGTTAGAGAATGTCAAGCTAAAGCAAGAGGAATTCCCTATAAAAAGAAGAAGAAGACCAATAAACAACAACAACCAACAATTAATAATAATACCAATAATCTTCTTATTCATGATTCTACTACTACTAATAATATTTCTTCTTCTTCTTCCTCTTCCTCTTCTTCTTCTTCTTCCATTATGCACTTCTCAACTCCTTGAACAACTCATCACTACTTCAATTTTATGATATCTTCACCAATTTCTTCTCCATCATCACATCAATATTATGGTAATTTTCTTACTTGATCTCTCTTTAATTATTTGTTTTTTGTTTTTTTATTTTTTTCCTATTATGGAATGATTCCATTTTGATATGGTTGATTAAGAAAAGCATGAATTACCATTCCAGTTTTTGTTTTTATTTTCTAAATCTAGATTTGTATGTGTTAATACTAAAATTCATAATCTATATTTGTATGAGTTATATTCTAAAATTTATTATGGTTTGTCTTTCCCTTTAGTAGAAGTATTTGAACTACAAAGTTCATAATCATTAGTTAACTCCGTACATCTATATCGGTTGAGTTATATATGTTTGTTTTTCTATAGTTACTTAAATAAGGCTAGATTTAGTTCTTAATTTTCGTAGAAAACATGGGAGAGTGGAAAATTATTTTTTTCTACCAAAATTTTGTATAATGCAGATGAGATAATACTAATACAACTATTTGATGTTGTTGTTGTTCTTTAATTTGTTTTTTCCTGGAATGATTTTGTACTATAAATATTGATTAATTTAATTATGGTGATCACATTGGTAGAAGTATTTGAGAGAAAAATATAATAAATGTTGCAACAATACTTGTTTGAACACCGTACAGATTCCTAATGTGTTTTCAGTGAATTATTTAGACAACAAATTGCAGTTTTAAATTTGTGATTTCTATAGAGTTCTTTTGAGATTCTTTCTATGTAGATGGTGCACTGGCTAATGGTCTTGTCAGATATATGTAATTCACTTTTCTGTTCTTTTTCTTTTTTTAATCATATCAAATTCATATATACAAATAAAAATAACTTCTTTTCTTTAATAAAAGAAGTGGGGTTAGGATTTTTTTTCAAAAACCAGAAGAATTTTTTTTTTTATCATTTAACTGAATTTTATTAGTAGAATTCCATTCACGAGTTTTTTGTAAATATATATTGTTTGATTTCATAATCAAATTTCAAAACAAAAAGTTCTTCAAAACTACTTCATAATATATATATATTAAATTGGCTTAAAGTTAAAAAAAAAAATTGCAGAAAGAGGTAAGGAAAAATAAAGAAATTCCCAAGTAGAAATAATCTTCACAATTTTAAATTTTACTATTAATCAAAGTTTTAATATTTTTTTTCTTTGTTGTCTTTAAATTTTGAAACTTAAATTTATAACCCTACTTTCACTTTTATATATACATATAATATATATATTTGTTGTTTTCTTCTTTATTTTCACAAACATTTTCAAAATAAGCTGGGTATTGGAATACTAAAAGAAATATTTTAAAAAACTTTCTTTTATACTAAACTAATAATTCAAATTTAGGAGAGTGCTGTAGCACTTAAACAAGCACATTCTTCAAACACTAAAAGTATGATGCTTAAAATTTTGTTAATGGTAAACTTGTTTAATTTATAAAATTCATTACACTTCACTTGATTTTCTTTATATAAGATAAATATTTTGTGGATTTTCCTTTAATTTGATGTTTTAGGAGTAAATAGTTTTTATTTCTTTTTATTTAAAAAAAAAACTCCAAAAATTAATTTGAAGGGTTTTGTTTTAACATGCTTTTTAGGTTAACCCTTTTGTTAATTTCCTCGTCGTTTTCCCTCCCCTCCCACCTGATCAATTATGATTATTTTATTAATTACACCAATTATCAACCACACCTCATAATCATTCTCAATAGAATCTCTCGAGTATTGTCCAGGAAGAGAGTGACCCATTTGGTCATTAAAAAAAGATATCAGTTTGCTTTTCAATTTTATTTAGATTCTTTTAATTAATTTTTCTTAAATAATAAACTTTAACAGTTGAAGTATAACACCTTACCCTAATACTCTATAATAAACTTTAATAATTATCTCAATGTCTTTTTATTTCAAATATATGAGATTTGATTTACTCCGTTTCTATAGTTATCGTATCAATTAGAAAAAATATGAACCTGAGTTTTTCTAAGTAGATTTGTTGGTTTGTTTGAAGTTGGATTTTTGTGGGACAGTAAGTTTTTTTATTCTCCCATTTCATCAAACGTCATATGATATATGATTGGTTTCTATGTCTCAAAATTCATATATACCTTTTCCCTATTTTGGGAGAGATCAGTTTAAGTAAAAAGCCTTCTACTTTGTGCTTCCATTTTACTTCATTCTTATGTTTAATTTCAACACAAATATGTCTTTCTTTTGTATAACTTTACCCTAAACTCTCACATGTTCTTGTCGGCCTACCTCATAGGGAAGTCTAGAATTATTATTGTTTTTTCTTCTTATTATTAGTATTATTAGTATTATTATTATTATTATTATTATTATTATTATATTTCAAATTGAATTTTTTTATGTCTTTTTAACTATCTATTTCTTGTAAAGGAAAATGAACCCTTGAATGGAGTGATCAAAATTAAAATTTTATTCATGTGTTCTTCCCAAATGCTTGTTTTTAGCTACCCTTTTATATATTATTTGTTCACTTTCTACACATGCAATTTTCTTTTTATAATTGCATATTATATATTTTATAATTTATATGTATATATTTATGTATTTTTGGGGTTTGTGAGTTACATTACATATATATATTCCAGGGGAAAACTTTTCACAAGACATTCTTGGCTGTCTCTCCTTCTTAGCTTCAATTTCCAAGGATGCCATTTGTCTCTACGTATATATTAATTAAATATATGGAATTTTTCAAGTGAACTATTTTGACCTTTCTCTTTTTCTCTCTCCCTCTAGTTTCTAACCCTATTTTTGCAAAATGTTTTTAGGGAGACAGGACAAAAACTTCTATTAAGTAGCATTATTTTAATTATATTAGTAGAGATATCTTTGGATGACAAACTTTTCTAATGGCTGATTTGAGAAGTTATTGGTGTGAGTTTCAAAATGAGAAGAAGCTAGTATAAAAGTTATTAATTGCATTCCGGAAGGATTGAACCATTTAGGGTTTTTCTTTTTTTATGTATGTTGTATATATATTTGTATTGAAATTGTTTATATCTTGAACTTTCATTGTATGATTATTTTGGTAAACTCTATTACAAATAGTGGAATGTTGATAAGTTGTAATTTGAATCGAACACACACTATATAATTTGAACTGGGGTTTGACATATTTTGGATTATTTGTTTGAAAAAGGTTCTCAACTATATATGGTTGTTCAACTTTCTCCACTAATTTTTAGTGTGGTAATATGTCTTATCTTAGAAATATTCTACCATTTATGCATTTTTTTTAGTATAAAAGTTGTGGATTGTGAAGTTTGTCCTTTAACAAAAGAAGTTGATACCTTGACTATTATGATATGTGGTGTCAATATATTAAGTCTAACTTAAATGAGTTGTTGAAACACTTTACACCGACACTTAACTACCAAATAATTTCTGAAATTTCTTAATTCAACAGCGAATTATTGTTTGTTTTATCTTCGTTTCATTATTATCTTCGTGTAATTTGTTTTTGCATCCTGACTCCATGAATAACTGATTAACCAAATTTAATTTTCAATATTTAAATGCAGGACAAAACCTTTGGAGCAAAAGAATTAGAAAGAACAGAATGAAATGTATTCAAAAGCAGAAATGTATTGAAAAGGCTGAAACTTTGAAGTTGTTTTTTTTCCTCTTTGCCCCCTTCTTTCATTTTTCATCTTTTTCTTTTTTCTTTTTTCCTCTCTCAATGTCACATTTGGGAAAACTATATATTAAGTTTGTGTACACAACTGCTATATACAGCCATATGCATGTCCCC

mRNA sequence

ATGTCCGGTGAAGGAGTGGTAGGAGATGGGTCAAGCAAAGAATACGGAGAAGGATCGTCGAAGTCGCCACCAAGGGCAACAACCCCAAGTCGTTACGAGTCACAAAAACGGCGAGATTGGAACACGTTTGGGCAATACTTGAAGAATCAAAGACCAGCAGTGGCACTATCTCAATGCAACTTCAACCATGTATTGGAGTTCTTAAGATACTTGGATCAATTTGGGAAGACAAAAGTTCATGTACAAGGTTGTATGTTTTACGGTCACCCAGAACCACCTTCCCCTTGTACCTGCCCGTTAAAACAAGCTTGGGGTAGCCTTGATGCTTTAATAGGGAGATTAAGGGCGGCTTATGAAGAAAACGGTGGTTCCCCTGAAACTAATCCTTTTGCAACTGCTTCTATAAGGCTTTATTTAAGACAAGTTAGAGAATGTCAAGCTAAAGCAAGAGGAATTCCCTATAAAAAGAAGAAGAAGACCAATAAACAACAACAACCAACAATTAATAATAATACCAATAATCTTCTTATTCATGATTCTACTACTACTAATAATATTTCTTCTTCTTCTTCCTCTTCCTCTTCTTCTTCTTCTTCCATTATGCACTTCTCAACTCCTTGA

Coding sequence (CDS)

ATGTCCGGTGAAGGAGTGGTAGGAGATGGGTCAAGCAAAGAATACGGAGAAGGATCGTCGAAGTCGCCACCAAGGGCAACAACCCCAAGTCGTTACGAGTCACAAAAACGGCGAGATTGGAACACGTTTGGGCAATACTTGAAGAATCAAAGACCAGCAGTGGCACTATCTCAATGCAACTTCAACCATGTATTGGAGTTCTTAAGATACTTGGATCAATTTGGGAAGACAAAAGTTCATGTACAAGGTTGTATGTTTTACGGTCACCCAGAACCACCTTCCCCTTGTACCTGCCCGTTAAAACAAGCTTGGGGTAGCCTTGATGCTTTAATAGGGAGATTAAGGGCGGCTTATGAAGAAAACGGTGGTTCCCCTGAAACTAATCCTTTTGCAACTGCTTCTATAAGGCTTTATTTAAGACAAGTTAGAGAATGTCAAGCTAAAGCAAGAGGAATTCCCTATAAAAAGAAGAAGAAGACCAATAAACAACAACAACCAACAATTAATAATAATACCAATAATCTTCTTATTCATGATTCTACTACTACTAATAATATTTCTTCTTCTTCTTCCTCTTCCTCTTCTTCTTCTTCTTCCATTATGCACTTCTCAACTCCTTGA
Homology
[Close]
BLAST of CSPI06G15510 vs. Swiss-Prot
Match: LSH10_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=1 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.1e-65
Identity = 131/185 (70.81%), Postives = 143/185 (77.30%), Query Frame = 1 

Query: 13  KEYGEGSSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRYLD 72
           K   E S   PP   TPSRYESQKRRDWNTFGQYLKNQRP V +S C+ NHVL+FLRYLD
Sbjct: 9   KSLMESSGSEPP--VTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLD 68

Query: 73  QFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFAT 132
           QFGKTKVHV GCMFYG PEPP+PCTCPL+QAWGSLDALIGRLRAAYEENGG PETNPFA+
Sbjct: 69  QFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFAS 128

Query: 133 ASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPTINNNTNNLLIHDSTTTNNISSSSSS 192
            +IR+YLR+VRECQAKARGIPYKKKKK  K+  P +     +            SSSSSS
Sbjct: 129 GAIRVYLREVRECQAKARGIPYKKKKK--KKPTPEMGGGRED------------SSSSSS 177

Query: 193 SSSSS 198
           S S S
Sbjct: 189 SFSFS 177

[Close]
BLAST of CSPI06G15510 vs. Swiss-Prot
Match: LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 9.3e-59
Identity = 107/153 (69.93%), Postives = 128/153 (83.66%), Query Frame = 1 

Query: 16  GEGSSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRYLDQFG 75
           G     SPP   TPSRYESQKRRDWNTF QYLKN +P +ALS+C+  HV+EFL+YLDQFG
Sbjct: 18  GPSFVSSPP--ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFG 77

Query: 76  KTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFATASI 135
           KTKVHV  C ++GH +PPSPC+CPLKQAWGSLDALIGRLRAAYEENGG P++NPFA  ++
Sbjct: 78  KTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 137

Query: 136 RLYLRQVRECQAKARGIPYKKKKKTNKQQQPTI 169
           R+YLR+VRE QAKARGIPY+KKK   +++ PT+
Sbjct: 138 RIYLREVRESQAKARGIPYEKKK---RKRPPTV 165

[Close]
BLAST of CSPI06G15510 vs. Swiss-Prot
Match: G1L3_ORYSI (Protein G1-like3 OS=Oryza sativa subsp. indica GN=OsI_05696 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-58
Identity = 110/167 (65.87%), Postives = 128/167 (76.65%), Query Frame = 1 

Query: 3   GEGVVGDGSSKEYGEGSSKSPPRAT--TPSRYESQKRRDWNTFGQYLKNQRPAVALSQCN 62
           G G  G G S   G  SS     AT  TPSRYE+QKRRDWNTFGQYL+N RP + L+QC+
Sbjct: 43  GGGGDGAGGSSSAGASSSAGGGAATPQTPSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCS 102

Query: 63  FNHVLEFLRYLDQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEE 122
             HVLEFLRYLDQFGKTKVH   C F+GHP PP+PC CPL+QAWGSLDAL+GRLRAA+EE
Sbjct: 103 GAHVLEFLRYLDQFGKTKVHTAACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEE 162

Query: 123 NGGSPETNPFATASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPT 168
           NGG PE+NPFA  ++RLYLR+VRE QA+ARG+ Y+KKK+   Q   T
Sbjct: 163 NGGRPESNPFAVRAVRLYLREVREHQARARGVSYEKKKRKKPQPADT 209

[Close]
BLAST of CSPI06G15510 vs. Swiss-Prot
Match: G1L3_ORYSJ (Protein G1-like3 OS=Oryza sativa subsp. japonica GN=G1L3 PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-58
Identity = 110/167 (65.87%), Postives = 128/167 (76.65%), Query Frame = 1 

Query: 3   GEGVVGDGSSKEYGEGSSKSPPRAT--TPSRYESQKRRDWNTFGQYLKNQRPAVALSQCN 62
           G G  G G S   G  SS     AT  TPSRYE+QKRRDWNTFGQYL+N RP + L+QC+
Sbjct: 43  GGGGDGAGGSSSAGASSSAGGGAATPQTPSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCS 102

Query: 63  FNHVLEFLRYLDQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEE 122
             HVLEFLRYLDQFGKTKVH   C F+GHP PP+PC CPL+QAWGSLDAL+GRLRAA+EE
Sbjct: 103 GAHVLEFLRYLDQFGKTKVHTAACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEE 162

Query: 123 NGGSPETNPFATASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPT 168
           NGG PE+NPFA  ++RLYLR+VRE QA+ARG+ Y+KKK+   Q   T
Sbjct: 163 NGGRPESNPFAVRAVRLYLREVREHQARARGVSYEKKKRKKPQPADT 209

[Close]
BLAST of CSPI06G15510 vs. Swiss-Prot
Match: G1L4_ORYSI (Protein G1-like4 OS=Oryza sativa subsp. indica GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.6e-58
Identity = 109/177 (61.58%), Postives = 132/177 (74.58%), Query Frame = 1 

Query: 2   SGEGVVGDGSSKEYGEGSSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNF 61
           SG G  G G S       S       +PSRYE+QKRRDWNTFGQYL+N RP ++L+QC+ 
Sbjct: 12  SGGGNGGGGGSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSG 71

Query: 62  NHVLEFLRYLDQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEEN 121
            HVLEFLRYLDQFGKTKVH   C F+GHP PP+PC CPL+QAWGSLDAL+GRLRAA+EEN
Sbjct: 72  AHVLEFLRYLDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEN 131

Query: 122 GGSPETNPFATASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPTINNNTNNLLIH 179
           GG PE+NPFA  ++RLYLR+VRE QA+ARG+ Y+KKK+   QQQ     +++ L  H
Sbjct: 132 GGRPESNPFAARAVRLYLREVREHQARARGVSYEKKKRKKPQQQQLQGGDSSGLHGH 188

[Close]
BLAST of CSPI06G15510 vs. TrEMBL
Match: A0A0A0KFP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G236080 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 5.2e-109
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 1 

Query: 1   MSGEGVVGDGSSKEYGEGSSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCN 60
           MSGEGVVGDGSSKEYGEGSSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCN
Sbjct: 1   MSGEGVVGDGSSKEYGEGSSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCN 60

Query: 61  FNHVLEFLRYLDQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEE 120
           FNHVLEFLRYLDQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEE
Sbjct: 61  FNHVLEFLRYLDQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEE 120

Query: 121 NGGSPETNPFATASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPTINNNTNNLLIHDS 180
           NGGSPETNPFATASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPTINNNTNNLLIHDS
Sbjct: 121 NGGSPETNPFATASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPTINNNTNNLLIHDS 180

Query: 181 TTTNNISSSSSSSSSSSSSIMHFSTP 207
           TTTNNI SSSSSSSSSSSSIMHFSTP
Sbjct: 181 TTTNNI-SSSSSSSSSSSSIMHFSTP 205

[Close]
BLAST of CSPI06G15510 vs. TrEMBL
Match: F6H4Z7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02160 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.2e-68
Identity = 123/149 (82.55%), Postives = 138/149 (92.62%), Query Frame = 1 

Query: 13  KEYGEGSSKSP--PRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRY 72
           K+  EGSS+SP   ++ TPSRYESQKRRDWNTFGQYLKNQRP V LSQCN NHVL+FLRY
Sbjct: 7   KDLAEGSSRSPGDQQSVTPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRY 66

Query: 73  LDQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPF 132
           LDQFGKTKVH+QGCMF+G PEPP+PCTCPL+QAWGSLDAL+GRLRAAYEENGGSPETNPF
Sbjct: 67  LDQFGKTKVHLQGCMFFGQPEPPAPCTCPLRQAWGSLDALVGRLRAAYEENGGSPETNPF 126

Query: 133 ATASIRLYLRQVRECQAKARGIPYKKKKK 160
           A+ +IR+YLR+VRECQ+KARGIPYKKKKK
Sbjct: 127 ASGAIRIYLREVRECQSKARGIPYKKKKK 155

[Close]
BLAST of CSPI06G15510 vs. TrEMBL
Match: A5C9K6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034969 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.2e-68
Identity = 123/149 (82.55%), Postives = 138/149 (92.62%), Query Frame = 1 

Query: 13  KEYGEGSSKSP--PRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRY 72
           K+  EGSS+SP   ++ TPSRYESQKRRDWNTFGQYLKNQRP V LSQCN NHVL+FLRY
Sbjct: 7   KDLAEGSSRSPGDQQSVTPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRY 66

Query: 73  LDQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPF 132
           LDQFGKTKVH+QGCMF+G PEPP+PCTCPL+QAWGSLDAL+GRLRAAYEENGGSPETNPF
Sbjct: 67  LDQFGKTKVHLQGCMFFGQPEPPAPCTCPLRQAWGSLDALVGRLRAAYEENGGSPETNPF 126

Query: 133 ATASIRLYLRQVRECQAKARGIPYKKKKK 160
           A+ +IR+YLR+VRECQ+KARGIPYKKKKK
Sbjct: 127 ASGAIRIYLREVRECQSKARGIPYKKKKK 155

[Close]
BLAST of CSPI06G15510 vs. TrEMBL
Match: W9RWI7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010344 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.5e-68
Identity = 128/159 (80.50%), Postives = 137/159 (86.16%), Query Frame = 1 

Query: 13  KEYGEGSSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRYLD 72
           K + EGS    P   TPSRYESQKRRDWNTFGQYLKNQRP V LSQCN NHVL+FLRYLD
Sbjct: 7   KGFAEGSGSDQPTPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYLD 66

Query: 73  QFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFAT 132
           QFGKTKVHVQGCMFYG PEPP+PCTCPL+QAWGSLDALIGRLRAAYEENGG PETNPFA+
Sbjct: 67  QFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGFPETNPFAS 126

Query: 133 ASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPTINNN 172
            +IR+YLR+VRECQAKARGIPYKKKKK  K  Q T  N+
Sbjct: 127 GAIRVYLREVRECQAKARGIPYKKKKK--KPDQITKGND 163

[Close]
BLAST of CSPI06G15510 vs. TrEMBL
Match: M1BTS7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020442 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.5e-68
Identity = 124/148 (83.78%), Postives = 138/148 (93.24%), Query Frame = 1 

Query: 13  KEYGEGSSKSP-PRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRYL 72
           KE  EGSS+SP  +  TPSRYESQKRRDWNTFGQYL+NQRP V++SQCN NHVLEFLRYL
Sbjct: 8   KELVEGSSRSPGDQPATPSRYESQKRRDWNTFGQYLRNQRPPVSMSQCNSNHVLEFLRYL 67

Query: 73  DQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFA 132
           DQFGKTKVH+QGC+FYG PEPP+PCTCPL+QAWGSLDALIGRLRAAYEENGGSPETNPFA
Sbjct: 68  DQFGKTKVHLQGCIFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFA 127

Query: 133 TASIRLYLRQVRECQAKARGIPYKKKKK 160
           + +IR+YLR+V+ECQAKARGIPYKKKKK
Sbjct: 128 SGAIRVYLREVKECQAKARGIPYKKKKK 155

[Close]
BLAST of CSPI06G15510 vs. TAIR10
Match: AT2G42610.1 (AT2G42610.1 Protein of unknown function (DUF640))

HSP 1 Score: 248.8 bits (634), Expect = 2.9e-66
Identity = 131/185 (70.81%), Postives = 143/185 (77.30%), Query Frame = 1 

Query: 13  KEYGEGSSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRYLD 72
           K   E S   PP   TPSRYESQKRRDWNTFGQYLKNQRP V +S C+ NHVL+FLRYLD
Sbjct: 9   KSLMESSGSEPP--VTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLD 68

Query: 73  QFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFAT 132
           QFGKTKVHV GCMFYG PEPP+PCTCPL+QAWGSLDALIGRLRAAYEENGG PETNPFA+
Sbjct: 69  QFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFAS 128

Query: 133 ASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPTINNNTNNLLIHDSTTTNNISSSSSS 192
            +IR+YLR+VRECQAKARGIPYKKKKK  K+  P +     +            SSSSSS
Sbjct: 129 GAIRVYLREVRECQAKARGIPYKKKKK--KKPTPEMGGGRED------------SSSSSS 177

Query: 193 SSSSS 198
           S S S
Sbjct: 189 SFSFS 177

[Close]
BLAST of CSPI06G15510 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 228.0 bits (580), Expect = 5.2e-60
Identity = 107/153 (69.93%), Postives = 128/153 (83.66%), Query Frame = 1 

Query: 16  GEGSSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRYLDQFG 75
           G     SPP   TPSRYESQKRRDWNTF QYLKN +P +ALS+C+  HV+EFL+YLDQFG
Sbjct: 18  GPSFVSSPP--ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFG 77

Query: 76  KTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFATASI 135
           KTKVHV  C ++GH +PPSPC+CPLKQAWGSLDALIGRLRAAYEENGG P++NPFA  ++
Sbjct: 78  KTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 137

Query: 136 RLYLRQVRECQAKARGIPYKKKKKTNKQQQPTI 169
           R+YLR+VRE QAKARGIPY+KKK   +++ PT+
Sbjct: 138 RIYLREVRESQAKARGIPYEKKK---RKRPPTV 165

[Close]
BLAST of CSPI06G15510 vs. TAIR10
Match: AT4G18610.1 (AT4G18610.1 Protein of unknown function (DUF640))

HSP 1 Score: 221.1 bits (562), Expect = 6.4e-58
Identity = 104/148 (70.27%), Postives = 123/148 (83.11%), Query Frame = 1 

Query: 23  PPRATTP-SRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRYLDQFGKTKVHV 82
           PP+   P SRYESQKRRDWNTF QYLK+Q P + +SQ ++ HVL FLRYLDQFGKTKVH 
Sbjct: 28  PPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHH 87

Query: 83  QGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEEN-GGSPETNPFATASIRLYLR 142
           Q C+F+G P+PP PCTCPLKQAWGSLDALIGRLRAAYEE+ GGSP+TNPFA  SIR++LR
Sbjct: 88  QACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLR 147

Query: 143 QVRECQAKARGIPYKKKKKTNKQQQPTI 169
           +VRE QAKARGIPY+KKK+   + +  +
Sbjct: 148 EVRESQAKARGIPYRKKKRRKTKNEVVV 175

[Close]
BLAST of CSPI06G15510 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-57
Identity = 103/149 (69.13%), Postives = 122/149 (81.88%), Query Frame = 1 

Query: 30  SRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRYLDQFGKTKVHVQGCMFYGH 89
           SRYE+QKRRDWNTFGQYL+N RP ++LS+C+  HVLEFLRYLDQFGKTKVH   C F+GH
Sbjct: 47  SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGH 106

Query: 90  PEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFATASIRLYLRQVRECQAKA 149
           P PP+PC CPL+QAWGSLDALIGRLRAA+EENGGSPETNPF   ++RLYLR+VR+ QAKA
Sbjct: 107 PNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKA 166

Query: 150 RGIPYKKKKKTN-----KQQQPTINNNTN 174
           RGI Y+KKK+          QP I+++ N
Sbjct: 167 RGISYEKKKRKRPPPPLPPAQPAISSSPN 195

[Close]
BLAST of CSPI06G15510 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 219.5 bits (558), Expect = 1.9e-57
Identity = 104/156 (66.67%), Postives = 129/156 (82.69%), Query Frame = 1 

Query: 19  SSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRYLDQFGKTK 78
           SS S P A + SRYE+QKRRDWNTFGQYL+N RP ++LS+C+  HVLEFLRYLDQFGKTK
Sbjct: 43  SSSSSPSANS-SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTK 102

Query: 79  VHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFATASIRLY 138
           VH   C FYGHP PP+PC CPL+QAWGSLDALIGRLRAA+EENGG PETNPF   ++RLY
Sbjct: 103 VHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLY 162

Query: 139 LRQVRECQAKARGIPYKKKKKTNKQQQPTINNNTNN 175
           LR+VR+ Q+KARG+ Y+KKK+  K+  P+ + ++++
Sbjct: 163 LREVRDMQSKARGVSYEKKKR--KRPLPSSSTSSSS 195

[Close]
BLAST of CSPI06G15510 vs. NCBI nr
Match: gi|778714159|ref|XP_004150559.2| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis sativus])

HSP 1 Score: 401.7 bits (1031), Expect = 7.5e-109
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 1 

Query: 1   MSGEGVVGDGSSKEYGEGSSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCN 60
           MSGEGVVGDGSSKEYGEGSSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCN
Sbjct: 1   MSGEGVVGDGSSKEYGEGSSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCN 60

Query: 61  FNHVLEFLRYLDQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEE 120
           FNHVLEFLRYLDQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEE
Sbjct: 61  FNHVLEFLRYLDQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEE 120

Query: 121 NGGSPETNPFATASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPTINNNTNNLLIHDS 180
           NGGSPETNPFATASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPTINNNTNNLLIHDS
Sbjct: 121 NGGSPETNPFATASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPTINNNTNNLLIHDS 180

Query: 181 TTTNNISSSSSSSSSSSSSIMHFSTP 207
           TTTNNI SSSSSSSSSSSSIMHFSTP
Sbjct: 181 TTTNNI-SSSSSSSSSSSSIMHFSTP 205

[Close]
BLAST of CSPI06G15510 vs. NCBI nr
Match: gi|659094776|ref|XP_008448236.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 370.2 bits (949), Expect = 2.4e-99
Identity = 188/206 (91.26%), Postives = 193/206 (93.69%), Query Frame = 1 

Query: 1   MSGEGVVGDGSSKEYGEGSSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCN 60
           MSGEGVVGD SSKEYGEGSS SPP ATTPSRYESQKRRDWNTFGQYLKNQRP VALSQCN
Sbjct: 1   MSGEGVVGDRSSKEYGEGSSNSPPTATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCN 60

Query: 61  FNHVLEFLRYLDQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEE 120
           FNHVLEFLRYLDQFGKTKVHVQGCMFYG PEPP+PCTCPLKQAWGSLDALIGRLRAAYEE
Sbjct: 61  FNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE 120

Query: 121 NGGSPETNPFATASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPTINNNTNNLLIHDS 180
           NGGSPETNPFA+ASIR+YLR+VRECQAKARGIPYKKKKK+NKQQQPT NNNTNNLLI DS
Sbjct: 121 NGGSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKQQQPTNNNNTNNLLIDDS 180

Query: 181 TTTNNISSSSSSSSSSSSSIMHFSTP 207
           TTTNNI      SSSSSSSIMHFSTP
Sbjct: 181 TTTNNI------SSSSSSSIMHFSTP 200

[Close]
BLAST of CSPI06G15510 vs. NCBI nr
Match: gi|147784987|emb|CAN66524.1| (hypothetical protein VITISV_034969 [Vitis vinifera])

HSP 1 Score: 267.7 bits (683), Expect = 1.7e-68
Identity = 123/149 (82.55%), Postives = 138/149 (92.62%), Query Frame = 1 

Query: 13  KEYGEGSSKSP--PRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRY 72
           K+  EGSS+SP   ++ TPSRYESQKRRDWNTFGQYLKNQRP V LSQCN NHVL+FLRY
Sbjct: 7   KDLAEGSSRSPGDQQSVTPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRY 66

Query: 73  LDQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPF 132
           LDQFGKTKVH+QGCMF+G PEPP+PCTCPL+QAWGSLDAL+GRLRAAYEENGGSPETNPF
Sbjct: 67  LDQFGKTKVHLQGCMFFGQPEPPAPCTCPLRQAWGSLDALVGRLRAAYEENGGSPETNPF 126

Query: 133 ATASIRLYLRQVRECQAKARGIPYKKKKK 160
           A+ +IR+YLR+VRECQ+KARGIPYKKKKK
Sbjct: 127 ASGAIRIYLREVRECQSKARGIPYKKKKK 155

[Close]
BLAST of CSPI06G15510 vs. NCBI nr
Match: gi|225446615|ref|XP_002280666.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Vitis vinifera])

HSP 1 Score: 267.7 bits (683), Expect = 1.7e-68
Identity = 123/149 (82.55%), Postives = 138/149 (92.62%), Query Frame = 1 

Query: 13  KEYGEGSSKSP--PRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRY 72
           K+  EGSS+SP   ++ TPSRYESQKRRDWNTFGQYLKNQRP V LSQCN NHVL+FLRY
Sbjct: 7   KDLAEGSSRSPGDQQSVTPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRY 66

Query: 73  LDQFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPF 132
           LDQFGKTKVH+QGCMF+G PEPP+PCTCPL+QAWGSLDAL+GRLRAAYEENGGSPETNPF
Sbjct: 67  LDQFGKTKVHLQGCMFFGQPEPPAPCTCPLRQAWGSLDALVGRLRAAYEENGGSPETNPF 126

Query: 133 ATASIRLYLRQVRECQAKARGIPYKKKKK 160
           A+ +IR+YLR+VRECQ+KARGIPYKKKKK
Sbjct: 127 ASGAIRIYLREVRECQSKARGIPYKKKKK 155

[Close]
BLAST of CSPI06G15510 vs. NCBI nr
Match: gi|703129555|ref|XP_010104392.1| (hypothetical protein L484_010344 [Morus notabilis])

HSP 1 Score: 267.3 bits (682), Expect = 2.2e-68
Identity = 128/159 (80.50%), Postives = 137/159 (86.16%), Query Frame = 1 

Query: 13  KEYGEGSSKSPPRATTPSRYESQKRRDWNTFGQYLKNQRPAVALSQCNFNHVLEFLRYLD 72
           K + EGS    P   TPSRYESQKRRDWNTFGQYLKNQRP V LSQCN NHVL+FLRYLD
Sbjct: 7   KGFAEGSGSDQPTPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYLD 66

Query: 73  QFGKTKVHVQGCMFYGHPEPPSPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFAT 132
           QFGKTKVHVQGCMFYG PEPP+PCTCPL+QAWGSLDALIGRLRAAYEENGG PETNPFA+
Sbjct: 67  QFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGFPETNPFAS 126

Query: 133 ASIRLYLRQVRECQAKARGIPYKKKKKTNKQQQPTINNN 172
            +IR+YLR+VRECQAKARGIPYKKKKK  K  Q T  N+
Sbjct: 127 GAIRVYLREVRECQAKARGIPYKKKKK--KPDQITKGND 163

The following BLAST results are available for this feature:
BLAST of CSPI06G15510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSH10_ARATH5.1e-6570.81Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=... [more]
LSH6_ARATH9.3e-5969.93Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 ... [more]
G1L3_ORYSI1.2e-5865.87Protein G1-like3 OS=Oryza sativa subsp. indica GN=OsI_05696 PE=3 SV=1[more]
G1L3_ORYSJ1.2e-5865.87Protein G1-like3 OS=Oryza sativa subsp. japonica GN=G1L3 PE=1 SV=1[more]
G1L4_ORYSI1.6e-5861.58Protein G1-like4 OS=Oryza sativa subsp. indica GN=OsI_16643 PE=3 SV=1[more]
BLAST of CSPI06G15510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFP9_CUCSA5.2e-10999.51Uncharacterized protein OS=Cucumis sativus GN=Csa_6G236080 PE=4 SV=1[more]
F6H4Z7_VITVI1.2e-6882.55Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02160 PE=4 SV=... [more]
A5C9K6_VITVI1.2e-6882.55Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034969 PE=4 SV=1[more]
W9RWI7_9ROSA1.5e-6880.50Uncharacterized protein OS=Morus notabilis GN=L484_010344 PE=4 SV=1[more]
M1BTS7_SOLTU1.5e-6883.78Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020442 PE=4 SV=1[more]
BLAST of CSPI06G15510 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42610.12.9e-6670.81 Protein of unknown function (DUF640)[more]
AT1G07090.15.2e-6069.93 Protein of unknown function (DUF640)[more]
AT4G18610.16.4e-5870.27 Protein of unknown function (DUF640)[more]
AT3G23290.21.1e-5769.13 Protein of unknown function (DUF640)[more]
AT2G31160.11.9e-5766.67 Protein of unknown function (DUF640)[more]
BLAST of CSPI06G15510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778714159|ref|XP_004150559.2|7.5e-10999.51PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis sativus][more]
gi|659094776|ref|XP_008448236.1|2.4e-9991.26PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo][more]
gi|147784987|emb|CAN66524.1|1.7e-6882.55hypothetical protein VITISV_034969 [Vitis vinifera][more]
gi|225446615|ref|XP_002280666.1|1.7e-6882.55PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Vitis vinifera][more]
gi|703129555|ref|XP_010104392.1|2.2e-6880.50hypothetical protein L484_010344 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006936ALOG_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009299 mRNA transcription
biological_process GO:0009416 response to light stimulus
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G15510.1CSPI06G15510.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006936ALOG domainPFAMPF04852DUF640coord: 25..144
score: 2.3
IPR006936ALOG domainPROFILEPS51697ALOGcoord: 31..158
score: 75
NoneNo IPR availablePANTHERPTHR31165FAMILY NOT NAMEDcoord: 9..165
score: 2.7E
NoneNo IPR availablePANTHERPTHR31165:SF10PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATEDcoord: 9..165
score: 2.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G15510Csa6G236080Cucumber (Chinese Long) v2cpicuB314
CSPI06G15510CsaV3_6G018670Cucumber (Chinese Long) v3cpicucB370
CSPI06G15510CsGy6G014990Cucumber (Gy14) v2cgybcpiB293
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G15510Watermelon (Charleston Gray)cpiwcgB480
CSPI06G15510Watermelon (97103) v1cpiwmB551
CSPI06G15510Watermelon (97103) v2cpiwmbB471