CSPI06G15150 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G15150
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCation/H(+) antiporter 15
LocationChr6 : 13322736 .. 13323602 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCTTTAAGGATTTTTGATTTTCCGAAGAGTAATCAAGAATGTCGAATGCTAATGCTTTCTCTGGATTTCAACAATTGTTCTTCAATCCAAAAAATGGGAAACCTTTGATTTGCTCAAACTTCTCTACAAATTACATGAAAGAAACCACTCTTCTTTCTTCTCTTTTCTCTCTCATTTCCTCCTCCACCACCCATTTCCTTCTTCCCAACCTCTAACTCAAACCCAATGTCCCCATTTCAAGATTCCTCTCTCGATCTTTCCCCATCCCGTTCCGCCATGGAAGTCCGGATGGAAATGGACTTTCCTTTTACCTGTCATCCTTCCAATCCAATCAACTTTACAGGCATTTGGCTCCTTCATGACTTTCTTTCTTTTTCCCTCCCTCTCCTCCTCTTGCATCCTTCCCTTGCCTCCATTTTAACTCGCTTCCTCGCCTTCTTTCTCAAGCGCTGTGCTCAACCCTCCTTTATTTCGCAGATTCTTCTAACTCTCTTTCTCACGTTCTCTCTTTTTTATTTGACTTGTATACTTTTTGCCTCTCATTGTTGCTTGTTCTGATGATAATTCTATGTTTTCCATTGCCCTCTTTAATGGGTCTTGTCTAGATTTATGATTATTTATGTAGTTTATTGTGGGCAATTTTATCTAAATAGTTTAGTTTGAATGGGTTTGCTTATATCTATATGAGTGTTGAGTTGTGAGGAGTGTTATGATGTTCTTAAGTTTCATTTCTTCTTAAAATCAGGATTTGCTTGACTTGGGTATGAGTATTCAGTATCCAAAGAATGTCCAATGCAATTTTCAATACAATAATGGTTACATAGTCTGTTGAACATTCAAGTTGTACTTTAACTTGACAATGCCG

mRNA sequence

ATGTCCCCATTTCAAGATTCCTCTCTCGATCTTTCCCCATCCCGTTCCGCCATGGAAGTCCGGATGGAAATGGACTTTCCTTTTACCTGTCATCCTTCCAATCCAATCAACTTTACAGGCATTTGGCTCCTTCATGACTTTCTTTCTTTTTCCCTCCCTCTCCTCCTCTTGCATCCTTCCCTTGCCTCCATTTTAACTCGCTTCCTCGCCTTCTTTCTCAAGCGCTGTGCTCAACCCTCCTTTATTTCGCAGATTCTTCTAACTCTCTTTCTCACGTTCTCTCTTTTTTATTTGACTTGTATACTTTTTGCCTCTCATTGTTGCTTGTTCTGA

Coding sequence (CDS)

ATGTCCCCATTTCAAGATTCCTCTCTCGATCTTTCCCCATCCCGTTCCGCCATGGAAGTCCGGATGGAAATGGACTTTCCTTTTACCTGTCATCCTTCCAATCCAATCAACTTTACAGGCATTTGGCTCCTTCATGACTTTCTTTCTTTTTCCCTCCCTCTCCTCCTCTTGCATCCTTCCCTTGCCTCCATTTTAACTCGCTTCCTCGCCTTCTTTCTCAAGCGCTGTGCTCAACCCTCCTTTATTTCGCAGATTCTTCTAACTCTCTTTCTCACGTTCTCTCTTTTTTATTTGACTTGTATACTTTTTGCCTCTCATTGTTGCTTGTTCTGA
Homology
[Close]
BLAST of CSPI06G15150 vs. TrEMBL
Match: W9RI53_9ROSA (Cation/H(+) antiporter 15 OS=Morus notabilis GN=L484_011137 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.8e-06
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 23 EMDFPFTCHPSNPINFTGIWLLHDFLSFSLPLLLLHPSLASILTRFLAFFLKRCAQPSFI 82
          E+   + CH  + IN +G+W   D L+FS+PLLLL  SL SI TR ++F LK   QPS +
Sbjct: 10 EVATSYICHAIDHINSSGLWFGDDPLAFSVPLLLLQLSLISIFTRSISFLLKPFGQPSIV 69

Query: 83 SQIL 87
          SQIL
Sbjct: 70 SQIL 73

[Close]
BLAST of CSPI06G15150 vs. NCBI nr
Match: gi|659127946|ref|XP_008463971.1| (PREDICTED: cation/H(+) antiporter 15-like [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-28
Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 1 

Query: 1  MSPFQDSSLDLSPSRSAMEVRMEMDFPFTCHPSNPINFTGIWLLHDFLSFSLPLLLLHPS 60
          MSP Q+SSLDLSPS SAME RME  FPF CHPSN IN  GIWL  DFLSFSLPLLLL  S
Sbjct: 1  MSPIQESSLDLSPSHSAMEARMEEGFPFICHPSNRINSRGIWLRDDFLSFSLPLLLLQLS 60

Query: 61 LASILTRFLAFFLKRCAQPSFISQILLTLFL 92
          L+SILTRFL+FFLKRCAQPSFISQIL  + L
Sbjct: 61 LSSILTRFLSFFLKRCAQPSFISQILAGIIL 91

[Close]
BLAST of CSPI06G15150 vs. NCBI nr
Match: gi|703109947|ref|XP_010099439.1| (Cation/H(+) antiporter 15 [Morus notabilis])

HSP 1 Score: 58.5 bits (140), Expect = 8.4e-06
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 23 EMDFPFTCHPSNPINFTGIWLLHDFLSFSLPLLLLHPSLASILTRFLAFFLKRCAQPSFI 82
          E+   + CH  + IN +G+W   D L+FS+PLLLL  SL SI TR ++F LK   QPS +
Sbjct: 10 EVATSYICHAIDHINSSGLWFGDDPLAFSVPLLLLQLSLISIFTRSISFLLKPFGQPSIV 69

Query: 83 SQIL 87
          SQIL
Sbjct: 70 SQIL 73

The following BLAST results are available for this feature:
BLAST of CSPI06G15150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G15150 vs. TrEMBL
Match NameE-valueIdentityDescription
W9RI53_9ROSA5.8e-0650.00Cation/H(+) antiporter 15 OS=Morus notabilis GN=L484_011137 PE=4 SV=1[more]
BLAST of CSPI06G15150 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G15150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659127946|ref|XP_008463971.1|2.7e-2878.02PREDICTED: cation/H(+) antiporter 15-like [Cucumis melo][more]
gi|703109947|ref|XP_010099439.1|8.4e-0650.00Cation/H(+) antiporter 15 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G15150.1CSPI06G15150.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32468FAMILY NOT NAMEDcoord: 23..86
score: 1.4
NoneNo IPR availablePANTHERPTHR32468:SF12CATION/H(+) ANTIPORTER 26-RELATEDcoord: 23..86
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G15150MELO3C025687.2Melon (DHL92) v3.6.1cpimedB422
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G15150Cucurbita maxima (Rimu)cmacpiB564
CSPI06G15150Cucurbita maxima (Rimu)cmacpiB630
CSPI06G15150Cucurbita moschata (Rifu)cmocpiB622
CSPI06G15150Cucumber (Chinese Long) v2cpicuB314
CSPI06G15150Melon (DHL92) v3.5.1cpimeB427
CSPI06G15150Watermelon (Charleston Gray)cpiwcgB466
CSPI06G15150Watermelon (97103) v1cpiwmB537
CSPI06G15150Cucurbita pepo (Zucchini)cpecpiB766
CSPI06G15150Bottle gourd (USVL1VR-Ls)cpilsiB422
CSPI06G15150Cucumber (Gy14) v2cgybcpiB293
CSPI06G15150Cucumber (Chinese Long) v3cpicucB370
CSPI06G15150Watermelon (97103) v2cpiwmbB460
CSPI06G15150Wax gourdcpiwgoB616