CSPI06G14060 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G14060
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 12410220 .. 12410695 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAGAATCCAAAACAAAATCACCCTGAAACAGAACAGAAACCAACAATGTAGAAGAGAAAGCGAAAACCAGCTGGGAGAATCAAAGAAACAATCCCTAATTAAAACGTAAAATGAACAAGAATCAACGCACTGACTGCTTCAACGGCTATTCCTTCAAAAATTTGCGAACAGAATTCCAGAGAAAGCAAGAATCAGGTCCAGTAATAAAAACGGTGGAAGATATTTTTGAGGAGTGTGATGAAAGTGAAGGTGGAGAGGGATTGAATGGAGAACAAAGACGAAAAAGGGAATGAGGACAAAGAAAAAAGGAAGACGTAATTGGAAGTTTGCCGAGAAAATATCAGAGAAGTGGGAGAGGAAAAGGGTAGTAGTAATGGAAGTGATTGAGGATCACATGGAAATGAATGGATGGATCCAAGAGAGATGGGAGAAATCGGCGGGGGAAGAATCTCGGGGTTTGGAATATGGAGTTTAG

mRNA sequence

ATGAACAAGAATCAACGCACTGACTGCTTCAACGGCTATTCCTTCAAAAATTTGCGAACAGAATTCCAGAGAAAGCAAGAATCAGGTCCAGTAATAAAAACGGTGGAAGATATTTTTGAGGAGTGTGATGAAAGTGAAGAGAAGTGGGAGAGGAAAAGGGTAGTAGTAATGGAAGTGATTGAGGATCACATGGAAATGAATGGATGGATCCAAGAGAGATGGGAGAAATCGGCGGGGGAAGAATCTCGGGGTTTGGAATATGGAGTTTAG

Coding sequence (CDS)

ATGAACAAGAATCAACGCACTGACTGCTTCAACGGCTATTCCTTCAAAAATTTGCGAACAGAATTCCAGAGAAAGCAAGAATCAGGTCCAGTAATAAAAACGGTGGAAGATATTTTTGAGGAGTGTGATGAAAGTGAAGAGAAGTGGGAGAGGAAAAGGGTAGTAGTAATGGAAGTGATTGAGGATCACATGGAAATGAATGGATGGATCCAAGAGAGATGGGAGAAATCGGCGGGGGAAGAATCTCGGGGTTTGGAATATGGAGTTTAG
Homology
[Close]
BLAST of CSPI06G14060 vs. TrEMBL
Match: A0A0A0KC68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188020 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.3e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MNKNQRTDCFNGYSFKNLRTEFQRKQESGPVIKTVEDIFEECDESEEKWERKRVVVMEVI 60
          MNKNQRTDCFNGYSFKNLRTEFQRKQESGPVIKTVEDIFEECDESEEKWERKRVVVMEVI
Sbjct: 1  MNKNQRTDCFNGYSFKNLRTEFQRKQESGPVIKTVEDIFEECDESEEKWERKRVVVMEVI 60

Query: 61 EDHMEMNGWIQERWEKSAGEESRGLEYGV 90
          EDHMEMNGWIQERWEKSAGEESRGLEYGV
Sbjct: 61 EDHMEMNGWIQERWEKSAGEESRGLEYGV 89

[Close]
BLAST of CSPI06G14060 vs. NCBI nr
Match: gi|700191904|gb|KGN47108.1| (hypothetical protein Csa_6G188020 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 4.8e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MNKNQRTDCFNGYSFKNLRTEFQRKQESGPVIKTVEDIFEECDESEEKWERKRVVVMEVI 60
          MNKNQRTDCFNGYSFKNLRTEFQRKQESGPVIKTVEDIFEECDESEEKWERKRVVVMEVI
Sbjct: 1  MNKNQRTDCFNGYSFKNLRTEFQRKQESGPVIKTVEDIFEECDESEEKWERKRVVVMEVI 60

Query: 61 EDHMEMNGWIQERWEKSAGEESRGLEYGV 90
          EDHMEMNGWIQERWEKSAGEESRGLEYGV
Sbjct: 61 EDHMEMNGWIQERWEKSAGEESRGLEYGV 89

The following BLAST results are available for this feature:
BLAST of CSPI06G14060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G14060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KC68_CUCSA3.3e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188020 PE=4 SV=1[more]
BLAST of CSPI06G14060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G14060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191904|gb|KGN47108.1|4.8e-44100.00hypothetical protein Csa_6G188020 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G14060.1CSPI06G14060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G14060Csa6G188020Cucumber (Chinese Long) v2cpicuB314
CSPI06G14060CsaV3_6G016460Cucumber (Chinese Long) v3cpicucB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G14060Silver-seed gourdcarcpiB0189
CSPI06G14060Silver-seed gourdcarcpiB0373
CSPI06G14060Silver-seed gourdcarcpiB0416
CSPI06G14060Silver-seed gourdcarcpiB0551
CSPI06G14060Silver-seed gourdcarcpiB1039
CSPI06G14060Cucumber (Chinese Long) v3cpicucB360
CSPI06G14060Watermelon (97103) v2cpiwmbB451
CSPI06G14060Watermelon (97103) v2cpiwmbB510
CSPI06G14060Wax gourdcpiwgoB610
CSPI06G14060Wax gourdcpiwgoB648
CSPI06G14060Wild cucumber (PI 183967)cpicpiB184
CSPI06G14060Cucumber (Gy14) v1cgycpiB205
CSPI06G14060Cucurbita maxima (Rimu)cmacpiB230
CSPI06G14060Cucurbita maxima (Rimu)cmacpiB559
CSPI06G14060Cucurbita maxima (Rimu)cmacpiB622
CSPI06G14060Cucurbita maxima (Rimu)cmacpiB858
CSPI06G14060Cucurbita moschata (Rifu)cmocpiB217
CSPI06G14060Cucurbita moschata (Rifu)cmocpiB548
CSPI06G14060Cucurbita moschata (Rifu)cmocpiB615
CSPI06G14060Cucurbita moschata (Rifu)cmocpiB841
CSPI06G14060Cucumber (Chinese Long) v2cpicuB311
CSPI06G14060Melon (DHL92) v3.5.1cpimeB434
CSPI06G14060Watermelon (Charleston Gray)cpiwcgB458
CSPI06G14060Watermelon (Charleston Gray)cpiwcgB519
CSPI06G14060Watermelon (97103) v1cpiwmB507
CSPI06G14060Watermelon (97103) v1cpiwmB530
CSPI06G14060Cucurbita pepo (Zucchini)cpecpiB292
CSPI06G14060Cucurbita pepo (Zucchini)cpecpiB630
CSPI06G14060Cucurbita pepo (Zucchini)cpecpiB755
CSPI06G14060Cucurbita pepo (Zucchini)cpecpiB882
CSPI06G14060Bottle gourd (USVL1VR-Ls)cpilsiB416
CSPI06G14060Melon (DHL92) v3.6.1cpimedB432
CSPI06G14060Cucumber (Gy14) v2cgybcpiB041
CSPI06G14060Cucumber (Gy14) v2cgybcpiB288