CSPI06G13970 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G13970
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	josephin protein-related
Location	Chr6 : 12353158 .. 12353995 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCATGCGTGCAAAGCTTTCAATATTCCCTGTTTATCTTGACATCCGCATAAAGTTCATTATGTCTTTAGCTGTTGGATCAAATATTCAACGGTTGAGATTGTTTGATTAATAAAGTGTTAGCCATTATATTGAATTGAATGACCCTCACTCTTGTTCGTTGCTTGATTGAGATTTAATACACAAAAACAAACAGAGCCTTGTTGAGTTTGCTTAAGAAAGCTTGGTGGGCAGGCTGCATTTTTCAATCTCTCTTTTCCCTGCTTTACTTTTTCTTCCATTTGGTATTCCATTTCATTTTAATCTCTCTCTCTCTCTCTTTCTTTCTCTCACTCTTGGCTCAGACCTTTCTTCTAATTCCATGACGACAACATTGGAGCAGAAGGTTAAGAAACCGAACTCATCCAGCAACAACAGAACTGGGAGAAGCACTTTTCAAAAGTGTAGATTTCCATCCCCCAAATCGCTTAAAAGACTGCAATTCTCTCCACTGTGCTTTCTAAAGCACCTAGCTGATAAAGTGACTCGAGCTTTGCATTTCATGGCTATGAAGAGAAATCGACCCCTTCAAAAACAACATGTTCCAGCGGCCGTGCCCGTTGCGAGTTCGAAGGCAGTTCAGGTACCTGCCACCATCGATTCACATAGAACAGAGGCTGTGGAGGACTGCATCAAGTACATCAACGCTTCCACTTAGCTCACACCAAATTCTTGTAAGATTTTCTCCTGACAAATGCGTATATATGTGGGGTTTTTGTGGGTTTTAATGTCTGATATCATATTGTTGCGGATCATGAATTATGATGCAATATGTTCTTGTTTAGATGAAAAAAACGTC

mRNA sequence

ATGACGACAACATTGGAGCAGAAGGTTAAGAAACCGAACTCATCCAGCAACAACAGAACTGGGAGAAGCACTTTTCAAAAGTGTAGATTTCCATCCCCCAAATCGCTTAAAAGACTGCAATTCTCTCCACTGTGCTTTCTAAAGCACCTAGCTGATAAAGTGACTCGAGCTTTGCATTTCATGGCTATGAAGAGAAATCGACCCCTTCAAAAACAACATGTTCCAGCGGCCGTGCCCGTTGCGAGTTCGAAGGCAGTTCAGGTACCTGCCACCATCGATTCACATAGAACAGAGGCTGTGGAGGACTGCATCAAGTACATCAACGCTTCCACTTAG

Coding sequence (CDS)

ATGACGACAACATTGGAGCAGAAGGTTAAGAAACCGAACTCATCCAGCAACAACAGAACTGGGAGAAGCACTTTTCAAAAGTGTAGATTTCCATCCCCCAAATCGCTTAAAAGACTGCAATTCTCTCCACTGTGCTTTCTAAAGCACCTAGCTGATAAAGTGACTCGAGCTTTGCATTTCATGGCTATGAAGAGAAATCGACCCCTTCAAAAACAACATGTTCCAGCGGCCGTGCCCGTTGCGAGTTCGAAGGCAGTTCAGGTACCTGCCACCATCGATTCACATAGAACAGAGGCTGTGGAGGACTGCATCAAGTACATCAACGCTTCCACTTAG

Homology

[Close]

BLAST of CSPI06G13970 vs. TrEMBL
Match: A0A0A0KE45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187920 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 7.6e-54
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 1   MTTTLEQKVKKPNSSSNNRTGRSTFQKCRFPSPKSLKRLQFSPLCFLKHLADKVTRALHF 60
           MTTTLEQKVKKPNSSSNNRTGRSTFQKCRFPSPKSLKRLQFSPLCFLKHLADKVTRALHF
Sbjct: 1   MTTTLEQKVKKPNSSSNNRTGRSTFQKCRFPSPKSLKRLQFSPLCFLKHLADKVTRALHF 60

Query: 61  MAMKRNRPLQKQHVPAAVPVASSKAVQVPATIDSHRTEAVEDCIKYINAST 112
           MAMKRNRPLQKQHVPAAVPVASSKAVQVPATIDSHRTEAVEDCIKYINAST
Sbjct: 61  MAMKRNRPLQKQHVPAAVPVASSKAVQVPATIDSHRTEAVEDCIKYINAST 111

[Close]

BLAST of CSPI06G13970 vs. NCBI nr
Match: gi|700191895|gb|KGN47099.1| (hypothetical protein Csa_6G187920 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 1   MTTTLEQKVKKPNSSSNNRTGRSTFQKCRFPSPKSLKRLQFSPLCFLKHLADKVTRALHF 60
           MTTTLEQKVKKPNSSSNNRTGRSTFQKCRFPSPKSLKRLQFSPLCFLKHLADKVTRALHF
Sbjct: 1   MTTTLEQKVKKPNSSSNNRTGRSTFQKCRFPSPKSLKRLQFSPLCFLKHLADKVTRALHF 60

Query: 61  MAMKRNRPLQKQHVPAAVPVASSKAVQVPATIDSHRTEAVEDCIKYINAST 112
           MAMKRNRPLQKQHVPAAVPVASSKAVQVPATIDSHRTEAVEDCIKYINAST
Sbjct: 61  MAMKRNRPLQKQHVPAAVPVASSKAVQVPATIDSHRTEAVEDCIKYINAST 111

[Close]

BLAST of CSPI06G13970 vs. NCBI nr
Match: gi|659128310|ref|XP_008464147.1| (PREDICTED: josephin-like protein [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 2.9e-46
Identity = 103/111 (92.79%), Postives = 106/111 (95.50%), Query Frame = 1


Query: 2   TTTLEQKVKKPNSSSNN-RTGRSTFQKCRFPSPKSLKRLQFSPLCFLKHLADKVTRALHF 61
           TTTLEQKVKKPNSSSNN RTGRSTFQKCRF SPKSLK LQFSPLCFLKHLADKVTRALHF
Sbjct: 189 TTTLEQKVKKPNSSSNNNRTGRSTFQKCRFRSPKSLKGLQFSPLCFLKHLADKVTRALHF 248

Query: 62  MAMKRNRPLQKQHVPAAVPVASSKAVQVPATIDSHRTEAVEDCIKYINAST 112
           MAMKRNRPLQKQ VP AVP+ASSKA+QVPAT+DSHRTEAVEDCIKYINAST
Sbjct: 249 MAMKRNRPLQKQPVP-AVPLASSKAIQVPATVDSHRTEAVEDCIKYINAST 298

The following BLAST results are available for this feature:

BLAST of CSPI06G13970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G13970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE45_CUCSA	7.6e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187920 PE=4 SV=1	[more]

BLAST of CSPI06G13970 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G13970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191895\|gb\|KGN47099.1\|	1.1e-53	100.00	hypothetical protein Csa_6G187920 [Cucumis sativus]	[more]
gi\|659128310\|ref\|XP_008464147.1\|	2.9e-46	92.79	PREDICTED: josephin-like protein [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006508	proteolysis
biological_process	GO:0016579	protein deubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008242	omega peptidase activity
molecular_function	GO:0004843	thiol-dependent ubiquitin-specific protease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G13970.1	CSPI06G13970.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G13970	Cla013348	Watermelon (97103) v1	cpiwmB530
CSPI06G13970	Csa6G187920	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G13970	MELO3C025866	Melon (DHL92) v3.5.1	cpimeB434
CSPI06G13970	MELO3C025866.2	Melon (DHL92) v3.6.1	cpimedB432
CSPI06G13970	CsaV3_6G016360	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G13970	Cla97C02G045710	Watermelon (97103) v2	cpiwmbB451
CSPI06G13970	Bhi10G000620	Wax gourd	cpiwgoB610
CSPI06G13970	Cucsa.139110	Cucumber (Gy14) v1	cgycpiB205
CSPI06G13970	CmaCh20G003580	Cucurbita maxima (Rimu)	cmacpiB559
CSPI06G13970	CmaCh02G007570	Cucurbita maxima (Rimu)	cmacpiB622
CSPI06G13970	CmoCh20G003870	Cucurbita moschata (Rifu)	cmocpiB548
CSPI06G13970	CmoCh02G007630	Cucurbita moschata (Rifu)	cmocpiB615
CSPI06G13970	Cp4.1LG05g09520	Cucurbita pepo (Zucchini)	cpecpiB755
CSPI06G13970	CsGy6G013860	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G13970	Carg23843	Silver-seed gourd	carcpiB0551
CSPI06G13970	Carg03354	Silver-seed gourd	carcpiB0373

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G13970	Wild cucumber (PI 183967)	cpicpiB184
CSPI06G13970	Cucurbita maxima (Rimu)	cmacpiB230
CSPI06G13970	Cucurbita maxima (Rimu)	cmacpiB858
CSPI06G13970	Cucurbita moschata (Rifu)	cmocpiB217
CSPI06G13970	Cucurbita moschata (Rifu)	cmocpiB841
CSPI06G13970	Cucumber (Chinese Long) v2	cpicuB311
CSPI06G13970	Watermelon (Charleston Gray)	cpiwcgB458
CSPI06G13970	Watermelon (Charleston Gray)	cpiwcgB519
CSPI06G13970	Watermelon (97103) v1	cpiwmB507
CSPI06G13970	Cucurbita pepo (Zucchini)	cpecpiB292
CSPI06G13970	Cucurbita pepo (Zucchini)	cpecpiB630
CSPI06G13970	Cucurbita pepo (Zucchini)	cpecpiB882
CSPI06G13970	Bottle gourd (USVL1VR-Ls)	cpilsiB416
CSPI06G13970	Cucumber (Gy14) v2	cgybcpiB041
CSPI06G13970	Silver-seed gourd	carcpiB0189
CSPI06G13970	Silver-seed gourd	carcpiB0416
CSPI06G13970	Silver-seed gourd	carcpiB1039
CSPI06G13970	Cucumber (Chinese Long) v3	cpicucB360
CSPI06G13970	Watermelon (97103) v2	cpiwmbB510
CSPI06G13970	Wax gourd	cpiwgoB648