CSPI06G13640 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G13640
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionGDSL esterase/lipase
LocationChr6 : 12118828 .. 12119125 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTGTTTCTATTGATGAAGAAGCGTTTACAGTATGGTTATCTATCTCTCCTACGTTCTTTGTTTGACACATTATATTTTGAGAGATCTTAAGTCTGGGTTTTTGAATTGTAGTTCTGATAACGGCAAACGATACAATCTCTGCAGGAATCCTTGCGTTTCAAATCCACTAAATGAGCTCGAGAGGACTAACAATGTTGTTGGTGCTTATTCCAAGGCTTGCATTGTTGTTGCAAAAGAATGTGGGGTTTCCGTTATTGATATTTGGACTAAGATGCATCAAGTTCCCGACTGA

mRNA sequence

ATGAATTTGTTTCTATTGATGAAGAAGCGTTTACATTCTGATAACGGCAAACGATACAATCTCTGCAGGAATCCTTGCGTTTCAAATCCACTAAATGAGCTCGAGAGGACTAACAATGTTGTTGGTGCTTATTCCAAGGCTTGCATTGTTGTTGCAAAAGAATGTGGGGTTTCCGTTATTGATATTTGGACTAAGATGCATCAAGTTCCCGACTGA

Coding sequence (CDS)

ATGAATTTGTTTCTATTGATGAAGAAGCGTTTACATTCTGATAACGGCAAACGATACAATCTCTGCAGGAATCCTTGCGTTTCAAATCCACTAAATGAGCTCGAGAGGACTAACAATGTTGTTGGTGCTTATTCCAAGGCTTGCATTGTTGTTGCAAAAGAATGTGGGGTTTCCGTTATTGATATTTGGACTAAGATGCATCAAGTTCCCGACTGA
Homology
[Close]
BLAST of CSPI06G13640 vs. Swiss-Prot
Match: GDL84_ARATH (GDSL esterase/lipase At5g45920 OS=Arabidopsis thaliana GN=At5g45920 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-09
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1 

Query: 23  RNPCVSNPLNELERTNNVVGAYSKACIVVAKECGVSVIDIWTKMHQVPD 72
           R P + N     ERTN V G Y+KACI VA+EC +SV D+W+KM Q+P+
Sbjct: 133 RYPYIENTTGLPERTNEVAGLYAKACIAVAEECQISVTDLWSKMQQIPN 181

[Close]
BLAST of CSPI06G13640 vs. TrEMBL
Match: A0A0A0KF93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G182160 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.1e-29
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1 

Query: 7  MKKRLHSDNGKRYNLCRNPCVSNPLNELERTNNVVGAYSKACIVVAKECGVSVIDIWTKM 66
          MKKRLHSDN KRYNL RNPCVSNPLNELERTNNVVGAYSKAC+VVAKECGVSVIDIWTKM
Sbjct: 1  MKKRLHSDNDKRYNLYRNPCVSNPLNELERTNNVVGAYSKACVVVAKECGVSVIDIWTKM 60

Query: 67 HQVPD 72
          HQVPD
Sbjct: 61 HQVPD 65

[Close]
BLAST of CSPI06G13640 vs. TrEMBL
Match: A0A0A0KI83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G518920 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.4e-14
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1 

Query: 23  RNPCVSNPLNELERTNNVVGAYSKACIVVAKECGVSVIDIWTKMHQVP 71
           +NP VSNP+NE ERTN+  GAY+KACI VAKECGVSVIDIWTKM QVP
Sbjct: 132 QNPYVSNPVNEPERTNDAAGAYAKACIAVAKECGVSVIDIWTKMQQVP 179

[Close]
BLAST of CSPI06G13640 vs. TrEMBL
Match: W9RZP0_9ROSA (GDSL esterase/lipase OS=Morus notabilis GN=L484_006152 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-10
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1 

Query: 23  RNPCVSNPLNELERTNNVVGAYSKACIVVAKECGVSVIDIWTKMHQVPD 72
           R+P + NP NE ERTN   GAY+KAC+ +A ECG+ VID+WTKM Q PD
Sbjct: 136 RHPYIENPSNEPERTNEAAGAYAKACVKLAGECGIPVIDLWTKMQQFPD 184

[Close]
BLAST of CSPI06G13640 vs. TrEMBL
Match: A0A0B2QBE0_GLYSO (GDSL esterase/lipase OS=Glycine soja GN=glysoja_036105 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-09
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 1 

Query: 22  CRNPCVSNPLNELERTNNVVGAYSKACIVVAKECGVSVIDIWTKMHQVPD 72
           CR P V NP    ERTN   G Y++ACI VA ECG+ V+D+WTKM Q PD
Sbjct: 135 CRYPYVENPQGLPERTNEAAGEYARACIAVAGECGIPVVDLWTKMQQYPD 184

[Close]
BLAST of CSPI06G13640 vs. TrEMBL
Match: I1MEQ3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G080500 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-09
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 1 

Query: 22  CRNPCVSNPLNELERTNNVVGAYSKACIVVAKECGVSVIDIWTKMHQVPD 72
           CR P V NP    ERTN   G Y++ACI VA ECG+ V+D+WTKM Q PD
Sbjct: 135 CRYPYVENPQGLPERTNEAAGEYARACIAVAGECGIPVVDLWTKMQQYPD 184

[Close]
BLAST of CSPI06G13640 vs. TAIR10
Match: AT5G45920.1 (AT5G45920.1 SGNH hydrolase-type esterase superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-10
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1 

Query: 23  RNPCVSNPLNELERTNNVVGAYSKACIVVAKECGVSVIDIWTKMHQVPD 72
           R P + N     ERTN V G Y+KACI VA+EC +SV D+W+KM Q+P+
Sbjct: 133 RYPYIENTTGLPERTNEVAGLYAKACIAVAEECQISVTDLWSKMQQIPN 181

[Close]
BLAST of CSPI06G13640 vs. NCBI nr
Match: gi|700191858|gb|KGN47062.1| (hypothetical protein Csa_6G182160 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-28
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1 

Query: 7  MKKRLHSDNGKRYNLCRNPCVSNPLNELERTNNVVGAYSKACIVVAKECGVSVIDIWTKM 66
          MKKRLHSDN KRYNL RNPCVSNPLNELERTNNVVGAYSKAC+VVAKECGVSVIDIWTKM
Sbjct: 1  MKKRLHSDNDKRYNLYRNPCVSNPLNELERTNNVVGAYSKACVVVAKECGVSVIDIWTKM 60

Query: 67 HQVPD 72
          HQVPD
Sbjct: 61 HQVPD 65

[Close]
BLAST of CSPI06G13640 vs. NCBI nr
Match: gi|778722173|ref|XP_011658420.1| (PREDICTED: GDSL esterase/lipase At5g45920-like [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 5.1e-20
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 

Query: 24  NPCVSNPLNELERTNNVVGAYSKACIVVAKECGVSVIDIWTKMHQVPD 72
           NPCVSNPLNELERTNNVVGAYSKAC+VVAKECGVSVIDIWTKMHQVPD
Sbjct: 72  NPCVSNPLNELERTNNVVGAYSKACVVVAKECGVSVIDIWTKMHQVPD 119

[Close]
BLAST of CSPI06G13640 vs. NCBI nr
Match: gi|449433770|ref|XP_004134670.1| (PREDICTED: GDSL esterase/lipase At5g45920 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 9.2e-14
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1 

Query: 23  RNPCVSNPLNELERTNNVVGAYSKACIVVAKECGVSVIDIWTKMHQVP 71
           +NP VSNP+NE ERTN+  GAY+KACI VAKECGVSVIDIWTKM QVP
Sbjct: 132 QNPYVSNPVNEPERTNDAAGAYAKACIAVAKECGVSVIDIWTKMQQVP 179

[Close]
BLAST of CSPI06G13640 vs. NCBI nr
Match: gi|659078519|ref|XP_008439764.1| (PREDICTED: GDSL esterase/lipase At5g45920 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 6.0e-13
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 23  RNPCVSNPLNELERTNNVVGAYSKACIVVAKECGVSVIDIWTKMHQVP 71
           +NP V NPLNE ERTN+  GAY+ ACI VAKECGVSVIDIWTKM QVP
Sbjct: 132 QNPYVPNPLNEPERTNDAAGAYANACIAVAKECGVSVIDIWTKMQQVP 179

[Close]
BLAST of CSPI06G13640 vs. NCBI nr
Match: gi|703145029|ref|XP_010108429.1| (GDSL esterase/lipase [Morus notabilis])

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-10
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1 

Query: 23  RNPCVSNPLNELERTNNVVGAYSKACIVVAKECGVSVIDIWTKMHQVPD 72
           R+P + NP NE ERTN   GAY+KAC+ +A ECG+ VID+WTKM Q PD
Sbjct: 136 RHPYIENPSNEPERTNEAAGAYAKACVKLAGECGIPVIDLWTKMQQFPD 184

The following BLAST results are available for this feature:
BLAST of CSPI06G13640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GDL84_ARATH4.0e-0953.06GDSL esterase/lipase At5g45920 OS=Arabidopsis thaliana GN=At5g45920 PE=2 SV=1[more]
BLAST of CSPI06G13640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF93_CUCSA7.1e-2995.38Uncharacterized protein OS=Cucumis sativus GN=Csa_6G182160 PE=4 SV=1[more]
A0A0A0KI83_CUCSA6.4e-1479.17Uncharacterized protein OS=Cucumis sativus GN=Csa_6G518920 PE=4 SV=1[more]
W9RZP0_9ROSA1.9e-1061.22GDSL esterase/lipase OS=Morus notabilis GN=L484_006152 PE=4 SV=1[more]
A0A0B2QBE0_GLYSO2.1e-0958.00GDSL esterase/lipase OS=Glycine soja GN=glysoja_036105 PE=4 SV=1[more]
I1MEQ3_SOYBN2.1e-0958.00Uncharacterized protein OS=Glycine max GN=GLYMA_15G080500 PE=4 SV=1[more]
BLAST of CSPI06G13640 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G45920.12.3e-1053.06 SGNH hydrolase-type esterase superfamily protein[more]
BLAST of CSPI06G13640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191858|gb|KGN47062.1|1.0e-2895.38hypothetical protein Csa_6G182160 [Cucumis sativus][more]
gi|778722173|ref|XP_011658420.1|5.1e-2097.92PREDICTED: GDSL esterase/lipase At5g45920-like [Cucumis sativus][more]
gi|449433770|ref|XP_004134670.1|9.2e-1479.17PREDICTED: GDSL esterase/lipase At5g45920 [Cucumis sativus][more]
gi|659078519|ref|XP_008439764.1|6.0e-1377.08PREDICTED: GDSL esterase/lipase At5g45920 [Cucumis melo][more]
gi|703145029|ref|XP_010108429.1|2.8e-1061.22GDSL esterase/lipase [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G13640.1CSPI06G13640.1mRNA