CSPI06G12940 (gene) Wild cucumber (PI 183967)

NameCSPI06G12940
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 11369697 .. 11369990 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGGTGGAATCTTCACGCGACTAGGGTAGGCAAAGAAGGCTTCATCGTATGCGATGATTTTCGAAAGACTTTAAAAAATAACTTTTACCCTCATTCTTTCTATGACAAGAAGAGAAGCAAGTTCATAAATTTGCATGGCAACATGGCTGTCGCAGAGTATGAGAAACGATTTACTAAGTTGGCCAAGTATGTCTTAGCCTTTGTAGTCGATGAGATGGACAAGTTCAAGCAGTTTGAAGAAGACTTGAAGATCAAAATTAAGATGTCGATCACAACCAGTATGGATTAG

mRNA sequence

ATGGTTGGGTGGAATCTTCACGCGACTAGGGTAGGCAAAGAAGGCTTCATCGTATGCGATGATTTTCGAAAGACTTTAAAAAATAACTTTTACCCTCATTCTTTCTATGACAAGAAGAGAAGCAAGTTCATAAATTTGCATGGCAACATGGCTGTCGCAGAGTATGAGAAACGATTTACTAAGTTGGCCAAGTATGTCTTAGCCTTTGTAGTCGATGAGATGGACAAGTTCAAGCAGTTTGAAGAAGACTTGAAGATCAAAATTAAGATGTCGATCACAACCAGTATGGATTAG

Coding sequence (CDS)

ATGGTTGGGTGGAATCTTCACGCGACTAGGGTAGGCAAAGAAGGCTTCATCGTATGCGATGATTTTCGAAAGACTTTAAAAAATAACTTTTACCCTCATTCTTTCTATGACAAGAAGAGAAGCAAGTTCATAAATTTGCATGGCAACATGGCTGTCGCAGAGTATGAGAAACGATTTACTAAGTTGGCCAAGTATGTCTTAGCCTTTGTAGTCGATGAGATGGACAAGTTCAAGCAGTTTGAAGAAGACTTGAAGATCAAAATTAAGATGTCGATCACAACCAGTATGGATTAG
BLAST of CSPI06G12940 vs. TrEMBL
Match: M5XAA1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb013312mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-07
Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 1

Query: 8   ATRVGKEG--FIVCDDFRKTLKNNFYPHSFYDKKRSKFINL-HGNMAVAEYEKRFTKLAK 67
           A ++G E    I  ++F++     FYPHS+   K+S+F+ L  G+M+V EYE +F KL++
Sbjct: 46  AVKIGYENPAAIKWEEFQRVFSEQFYPHSYRHAKKSEFLYLKQGSMSVVEYEHKFNKLSR 105

Query: 68  YVLAFVVDEMDKFKQFEEDLKIKIKMSITTS 96
           +    V  E D+ ++FEE L  KI+  +T +
Sbjct: 106 FAPELVATEDDRCRRFEEGLCWKIQAVVTAN 136

BLAST of CSPI06G12940 vs. TrEMBL
Match: M5Y283_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019381mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-07
Identity = 29/94 (30.85%), Postives = 55/94 (58.51%), Query Frame = 1

Query: 3   GWNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINLH-GNMAVAEYEKRFTK 62
           GW            +  ++F++   + FYPHS+ ++K+S+F++L  G+M+V EYE +F +
Sbjct: 135 GWKAVRRGYANPAALTWEEFQRVFFDQFYPHSYKNEKKSEFLHLRQGSMSVLEYEHKFNE 194

Query: 63  LAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTS 96
           L+++    V  E D+  +FEE L + I+  +T +
Sbjct: 195 LSRFAPELVTTEEDRCTRFEEGLWLDIQAVVTAN 228

BLAST of CSPI06G12940 vs. NCBI nr
Match: gi|659111571|ref|XP_008455797.1| (PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 9.0e-20
Identity = 51/95 (53.68%), Postives = 70/95 (73.68%), Query Frame = 1

Query: 4   WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINL-HGNMAVAEYEKRFTKL 63
           W  HA RVG   +++ ++FRK L++ FYP SF D+KR KF++L  G+M V EYEK FT+L
Sbjct: 49  WTFHAARVGGTKYVMWEEFRKALRDKFYPCSFCDEKRKKFMSLLQGDMTVIEYEKIFTEL 108

Query: 64  AKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD 98
           AKY L FV+DE+DK KQF E L+I+I+  IT S++
Sbjct: 109 AKYTLDFVIDEVDKCKQFGEGLRIEIRAPITASIN 143

BLAST of CSPI06G12940 vs. NCBI nr
Match: gi|659098594|ref|XP_008450217.1| (PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-15
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 1

Query: 4   WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINL-HGNMAVAEYEKRFTKL 63
           W L+A RVG    ++ + FRK  +  FYPH F D KR +F+NL  GNM +AEYE +F +L
Sbjct: 111 WILYAARVGGVNIVMWEGFRKGFQEKFYPHLFVDTKRKEFLNLKQGNMTIAEYENKFIEL 170

Query: 64  AKYVLAFVVDEMDKFKQFEEDL 85
            KYV++F++DE DK K FEE L
Sbjct: 171 VKYVISFIMDEEDKCKCFEEGL 192

BLAST of CSPI06G12940 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-10
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 1

Query: 4   WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINLH-GNMAVAEYEKRFTKL 63
           W    +R      I  ++F+K     +YP S+ D KRS+F  L  G+M +AEYEK++ KL
Sbjct: 128 WRTFESRYHDTNEISWNEFKKAFYEKYYPRSYKDAKRSEFFRLVLGSMTIAEYEKKYIKL 187

Query: 64  AKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD 98
           +KY  + + DE+D+ K+FE+ L+ +I+  +T S +
Sbjct: 188 SKYATSMIEDEIDRCKRFEDGLREEIRTPVTASSE 222

BLAST of CSPI06G12940 vs. NCBI nr
Match: gi|659131051|ref|XP_008465483.1| (PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 9.3e-09
Identity = 33/92 (35.87%), Postives = 53/92 (57.61%), Query Frame = 1

Query: 4   WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINL-HGNMAVAEYEKRFTKL 63
           W L         F+    F++  +  FYPH F D+KR +F+ L  G+  VA+Y K+F +L
Sbjct: 43  WTLCVAITEGVEFVTWRYFQREFQKKFYPHLFVDEKRREFLRLVQGDETVAQYGKKFMEL 102

Query: 64  AKYVLAFVVDEMDKFKQFEEDLKIKIKMSITT 95
           A+Y + F+++E DK   FE+ L+  I+  +TT
Sbjct: 103 ARYAITFIMNEEDKCMHFEDGLRTSIRALVTT 134

BLAST of CSPI06G12940 vs. NCBI nr
Match: gi|985461745|ref|XP_015388537.1| (PREDICTED: uncharacterized protein LOC107178182 [Citrus sinensis])

HSP 1 Score: 62.4 bits (150), Expect = 5.1e-07
Identity = 32/75 (42.67%), Postives = 51/75 (68.00%), Query Frame = 1

Query: 22  FRKTLKNNFYPHSFYDKKRSKFINL-HGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQF 81
           FRK   ++++P  + D KRS+F  L  G+M V EYEK+F  L+K+ ++ V DE ++ +QF
Sbjct: 42  FRKEFYDHYFPVVYQDIKRSEFPRLVQGSMTVEEYEKKFIDLSKFAISTVDDERERCRQF 101

Query: 82  EEDLKIKIKMSITTS 96
           EE L+ +I+ +IT S
Sbjct: 102 EEGLRFEIRTTITAS 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
M5XAA1_PRUPE4.7e-0736.26Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb013312mg PE=4 S... [more]
M5Y283_PRUPE4.7e-0730.85Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019381mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659111571|ref|XP_008455797.1|9.0e-2053.68PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo][more]
gi|659098594|ref|XP_008450217.1|5.1e-1551.22PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo][more]
gi|659116534|ref|XP_008458118.1|1.7e-1036.84PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|659131051|ref|XP_008465483.1|9.3e-0935.87PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo][more]
gi|985461745|ref|XP_015388537.1|5.1e-0742.67PREDICTED: uncharacterized protein LOC107178182 [Citrus sinensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G12940.1CSPI06G12940.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 20..80
score: 7.

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G12940CsaV3_6G015420Cucumber (Chinese Long) v3cpicucB364
The following gene(s) are paralogous to this gene:

None