CSPI06G10560 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G10560
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2
LocationChr6 : 9173888 .. 9174292 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAGAATAGACGGAATGGGCTCCGTTACATGGGAGGAGTTCGATAAAGTGTTTCAGAACAAGTTCTACCATCATTCCTTTTGCGATGCAAAGATGAATGAATTTATAAGTTTAGTTCAAGGCGACATGACCATTGCAAAATATGAGAAAATGTTTACTAAATTGGCTCAGTACACATTAGTCTTCGTGTTTGACGAGACAGACAAATGTAAGCATTTTGAGGACAAATTAAAGGGAAAAATCATAACATCAATGACGGCCAGCATGAACTGGTCAAATTTTGCTAAAGTAGTTGAAGCTGTCGTGCGAGTTAAGAGAAGCTTGGCAAAGGAAGAGAAAAACAAGAATGCAAAGGAAGGCTCAAACATTCAAAATGTTAGTAACATACGAGGTGGTGAGTGA

mRNA sequence

ATGACGAGAATAGACGGAATGGGCTCCGTTACATGGGAGGAGTTCGATAAAGTGTTTCAGAACAAGTTCTACCATCATTCCTTTTGCGATGCAAAGATGAATGAATTTATAAGTTTAGTTCAAGGCGACATGACCATTGCAAAATATGAGAAAATGTTTACTAAATTGGCTCAGTACACATTAGTCTTCGTGTTTGACGAGACAGACAAATGTAAGCATTTTGAGGACAAATTAAAGGGAAAAATCATAACATCAATGACGGCCAGCATGAACTGGTCAAATTTTGCTAAAGTAGTTGAAGCTGTCGTGCGAGTTAAGAGAAGCTTGGCAAAGGAAGAGAAAAACAAGAATGCAAAGGAAGGCTCAAACATTCAAAATGTTAGTAACATACGAGGTGGTGAGTGA

Coding sequence (CDS)

ATGACGAGAATAGACGGAATGGGCTCCGTTACATGGGAGGAGTTCGATAAAGTGTTTCAGAACAAGTTCTACCATCATTCCTTTTGCGATGCAAAGATGAATGAATTTATAAGTTTAGTTCAAGGCGACATGACCATTGCAAAATATGAGAAAATGTTTACTAAATTGGCTCAGTACACATTAGTCTTCGTGTTTGACGAGACAGACAAATGTAAGCATTTTGAGGACAAATTAAAGGGAAAAATCATAACATCAATGACGGCCAGCATGAACTGGTCAAATTTTGCTAAAGTAGTTGAAGCTGTCGTGCGAGTTAAGAGAAGCTTGGCAAAGGAAGAGAAAAACAAGAATGCAAAGGAAGGCTCAAACATTCAAAATGTTAGTAACATACGAGGTGGTGAGTGA
Homology
[Close]
BLAST of CSPI06G10560 vs. TrEMBL
Match: M5XAA1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb013312mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-12
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 9   SVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDET 68
           ++ WEEF +VF  +FY HS+  AK +EF+ L QG M++ +YE  F KL+++    V  E 
Sbjct: 56  AIKWEEFQRVFSEQFYPHSYRHAKKSEFLYLKQGSMSVVEYEHKFNKLSRFAPELVATED 115

Query: 69  DKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRVKRSLA 111
           D+C+ FE+ L  KI   +TA+  + N   + +A  RV R L+
Sbjct: 116 DRCRRFEEGLCWKIQAVVTAN-TYPNMRALAQAAERVSRKLS 156

[Close]
BLAST of CSPI06G10560 vs. TrEMBL
Match: M5XSR7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.6e-11
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 1 

Query: 9   SVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDET 68
           ++ WEEF +VF + FY  S+  AK +EF+ L QG M++ +YE  F +L+++    V  E 
Sbjct: 143 AINWEEFQRVFSDPFYPPSYKQAKKSEFLYLKQGSMSVVEYEHKFNELSRFAPELVATEE 202

Query: 69  DKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRVKRSL 110
           D+C+ FE+ L  +I   +TA+  + N   + +A  RV R L
Sbjct: 203 DRCRRFEEGLWWEIQAVVTAN-TYPNMRALAQAAARVSRKL 242

[Close]
BLAST of CSPI06G10560 vs. TrEMBL
Match: M5VK25_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 1 

Query: 9   SVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDET 68
           ++ WEEF +VF  +FY  S+  AK +EF+ L QG M++ +YE  F +L+++    V  E 
Sbjct: 143 AINWEEFQRVFSEQFYPPSYRHAKKSEFLYLKQGSMSVMEYEHKFNELSRFAPELVATEE 202

Query: 69  DKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRVKRSL 110
           D+C+ FE+ L  +I   +TA+  + N   +  AV RV R L
Sbjct: 203 DRCRRFEEGLWWEIQAVITAN-TYPNMRALAHAVERVSRKL 242

[Close]
BLAST of CSPI06G10560 vs. TrEMBL
Match: W9SDR5_9ROSA (Retrovirus-related Pol polyprotein from transposon 297 OS=Morus notabilis GN=L484_022002 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.6e-10
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 1 

Query: 3   RIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLV 62
           RID  G +TWE+FD +F  +++  S+ D K  EF+SL+QGDM++ +YE  F  L+++   
Sbjct: 110 RIDVAG-LTWEQFDTLFNEQYFPQSYRDEKALEFMSLLQGDMSVREYEAKFNDLSRFAPS 169

Query: 63  FVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRVKR 108
            V  E  +C  FE  LK  +  S+ A +   NF  +V A  RV++
Sbjct: 170 LVESEHLRCLKFEKGLKNSLRRSLVA-LRIQNFRDLVAAATRVEQ 212

[Close]
BLAST of CSPI06G10560 vs. TrEMBL
Match: W9QKF9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019698 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-09
Identity = 41/131 (31.30%), Postives = 72/131 (54.96%), Query Frame = 1 

Query: 3   RIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLV 62
           R+D +G +TWE+F+ +F  +++  S+ + K  EF+SL+QGDM+I +YE  F  L+++   
Sbjct: 30  RMDVIG-LTWEQFETLFNEQYFPQSYKEEKALEFMSLLQGDMSIREYEAKFNDLSRFAPS 89

Query: 63  FVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRVKRSLAKEEKNKNAKEGS 122
            V  E  +C  FE  LK  +  S+ A +   NF  +V A  RV++      ++K      
Sbjct: 90  LVESEHMRCLKFEKGLKNSVRRSLVA-LRLRNFQDLVAAATRVEQDNLAYHQSKKVTGQV 149

Query: 123 NIQNVSNIRGG 134
           ++    ++ GG
Sbjct: 150 SVSGRPSVSGG 158

[Close]
BLAST of CSPI06G10560 vs. NCBI nr
Match: gi|659111571|ref|XP_008455797.1| (PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 1 

Query: 3   RIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLV 62
           R+ G   V WEEF K  ++KFY  SFCD K  +F+SL+QGDMT+ +YEK+FT+LA+YTL 
Sbjct: 55  RVGGTKYVMWEEFRKALRDKFYPCSFCDEKRKKFMSLLQGDMTVIEYEKIFTELAKYTLD 114

Query: 63  FVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVV 104
           FV DE DKCK F + L+ +I   +TAS+NWS+F+K+V+  +
Sbjct: 115 FVIDEVDKCKQFGEGLRIEIRAPITASINWSDFSKLVDVAM 155

[Close]
BLAST of CSPI06G10560 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 5.9e-22
Identity = 60/127 (47.24%), Postives = 81/127 (63.78%), Query Frame = 1 

Query: 2   TRIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTL 61
           +R      ++W EF K F  K+Y  S+ DAK +EF  LV G MTIA+YEK + KL++Y  
Sbjct: 133 SRYHDTNEISWNEFKKAFYEKYYPRSYKDAKRSEFFRLVLGSMTIAEYEKKYIKLSKYAT 192

Query: 62  VFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRVKRSLAKEEKNKNAKEG 121
             + DE D+CK FED L+ +I T +TAS  W  F+K+VE  VRV++SLA   + KN KE 
Sbjct: 193 SMIEDEIDRCKRFEDGLREEIRTPVTASSEWKEFSKLVETAVRVEKSLA---ERKNEKEV 252

Query: 122 SNIQNVS 129
           S  +NVS
Sbjct: 253 S--RNVS 254

[Close]
BLAST of CSPI06G10560 vs. NCBI nr
Match: gi|659131051|ref|XP_008465483.1| (PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = 1 

Query: 5   DGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFV 64
           +G+  VTW  F + FQ KFY H F D K  EF+ LVQGD T+A+Y K F +LA+Y + F+
Sbjct: 51  EGVEFVTWRYFQREFQKKFYPHLFVDEKRREFLRLVQGDETVAQYGKKFMELARYAITFI 110

Query: 65  FDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRVKRSLAKEEKNK 117
            +E DKC HFED L+  I   +T      +F+K+VEA +R+++ L +E++ K
Sbjct: 111 MNEEDKCMHFEDGLRTSIRALVTTCAGSLDFSKLVEAAIRIEKCLVEEDEEK 162

[Close]
BLAST of CSPI06G10560 vs. NCBI nr
Match: gi|659118041|ref|XP_008458920.1| (PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 3.4e-17
Identity = 44/126 (34.92%), Postives = 82/126 (65.08%), Query Frame = 1 

Query: 9   SVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDET 68
           ++ W+ F  +F+ K+Y  ++C+AK +EF+ L QG +++A+YE+ +T+L++Y  + +  E+
Sbjct: 36  TLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQGSLSMAEYERKYTELSRYAGMIMASES 95

Query: 69  DKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRVKRSLAKEEKNKNAKEGSNIQNVS 128
           D+C  FE  L+ +I T +TA   W+NF+++VE  +RV++S+ +E+       G  +   S
Sbjct: 96  DRCHRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIVEEKSAMELSRG--VSTTS 155

Query: 129 NIRGGE 135
            IRG E
Sbjct: 156 GIRGPE 159

[Close]
BLAST of CSPI06G10560 vs. NCBI nr
Match: gi|659133542|ref|XP_008466780.1| (PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-15
Identity = 42/120 (35.00%), Postives = 76/120 (63.33%), Query Frame = 1 

Query: 15  FDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHF 74
           F  +F+ K+Y  ++C+AK +EF+ L QG + + +YE  +T+L++Y  + V  E+D+C+ F
Sbjct: 47  FRGIFEEKYYPTTYCEAKRDEFLELKQGSLLVVEYEMKYTELSRYAEMIVASESDRCRRF 106

Query: 75  EDKLKGKIITSMTASMNWSNFAKVVEAVVRVKRSLAKEEKNKNAKEGSNIQNVSNIRGGE 134
           E  L+ ++ T +TA   W+NF+++VE  +RV++S+ +E+       G  +   S IRG E
Sbjct: 107 ERGLRFELRTPVTAIAKWTNFSQLVETALRVEQSIVEEKSAMELSRG--VSTTSGIRGRE 164

The following BLAST results are available for this feature:
BLAST of CSPI06G10560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G10560 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XAA1_PRUPE1.3e-1239.22Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb013312mg PE=4 S... [more]
M5XSR7_PRUPE9.6e-1136.63Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1[more]
M5VK25_PRUPE1.2e-1037.62Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1[more]
W9SDR5_9ROSA3.6e-1038.10Retrovirus-related Pol polyprotein from transposon 297 OS=Morus notabilis GN=L48... [more]
W9QKF9_9ROSA1.8e-0931.30Uncharacterized protein OS=Morus notabilis GN=L484_019698 PE=4 SV=1[more]
BLAST of CSPI06G10560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G10560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111571|ref|XP_008455797.1|1.4e-2353.47PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo][more]
gi|659116534|ref|XP_008458118.1|5.9e-2247.24PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|659131051|ref|XP_008465483.1|1.1e-2044.64PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo][more]
gi|659118041|ref|XP_008458920.1|3.4e-1734.92PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo][more]
gi|659133542|ref|XP_008466780.1|2.4e-1535.00PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G10560.1CSPI06G10560.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 9..74
score: 2.