CSPI06G10520 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G10520
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
Location	Chr6 : 9161919 .. 9162469 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACATATTAATATTAATTGATTATTTAGTTTATTTATACGCCGTCGCGTCGCTGGTTGCCTCATCAACATTGCCTTCTACTTTTCTTTTCATTTTCCCTCGAAACACTCTCTAATTCTTTCTTCTTTCTTCTTTTTCTTTTTTTTCATTATGAAGAAATCAGGTTTCATCGCCGCCTCCGTCGCCGCCGCATCCGCCTCCGCCGCCGTCGCCTCCCCTTCTTCCTCTACCCTTGTTTGCAACCCTAAAGTTCTATTCCCTCGCCAGGTAACCCTTCTAAACCAACGATTCATCATTTTTCCCTCTTTAAAAACATCCTTCCTTTAAGATCTTGAACCCTCAATTTTTTTGTTTGATCCTGTAAATTTCTTGCCTTTTGAGATTTGGGAAGTTTTAATTACGCAGGAGGGAAAGGAAGGAGAGAACTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCATCATCGTCTTCCACCGATAAATTTGCTCCTAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCATAGATGA

mRNA sequence

ATGAAGAAATCAGGTTTCATCGCCGCCTCCGTCGCCGCCGCATCCGCCTCCGCCGCCGTCGCCTCCCCTTCTTCCTCTACCCTTGTTTGCAACCCTAAAGTTCTATTCCCTCGCCAGGAGGGAAAGGAAGGAGAGAACTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCATCATCGTCTTCCACCGATAAATTTGCTCCTAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCATAGATGA

Coding sequence (CDS)

ATGAAGAAATCAGGTTTCATCGCCGCCTCCGTCGCCGCCGCATCCGCCTCCGCCGCCGTCGCCTCCCCTTCTTCCTCTACCCTTGTTTGCAACCCTAAAGTTCTATTCCCTCGCCAGGAGGGAAAGGAAGGAGAGAACTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCATCATCGTCTTCCACCGATAAATTTGCTCCTAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCATAGATGA

Homology

[Close]

BLAST of CSPI06G10520 vs. TrEMBL
Match: E0CTD2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-11
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSSSSS 60
          MKKSGF AASVAAASA+A +++PSSS  +CN K+   R E   G++  +S S  SSS   
Sbjct: 1  MKKSGFFAASVAAASATA-ISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQRSSS--- 60

Query: 61 SSSSSTDKFAPKFDGLRFIETLVTAHR 88
                D+FAP+FDGLRFIETLVTAHR
Sbjct: 61 -----ADRFAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of CSPI06G10520 vs. TrEMBL
Match: A0A061EAV9_THECC (Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative OS=Theobroma cacao GN=TCM_008102 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-09
Identity = 49/89 (55.06%), Postives = 56/89 (62.92%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASA--AVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSSS 60
          MKKSG  AASVAAASA+A  A +SPSS    CN    F  ++ KE E           SS
Sbjct: 1  MKKSGLFAASVAAASATAISASSSPSSPNFACNSNFQFSSEDKKEHE-----------SS 60

Query: 61 SSSSSSSTDKFAPKFDGLRFIETLVTAHR 88
          +   S S DKFAP+FDGLRFIETL+TAHR
Sbjct: 61 AIKKSPSKDKFAPRFDGLRFIETLITAHR 78

[Close]

BLAST of CSPI06G10520 vs. TrEMBL
Match: A0A059DGL2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01816 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-09
Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = 1


Query: 1   MKKSGFIAASVAAASASAAVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSSSSS 60
           MKKSG  A S AAASA+A  +S SS    C  K+ FP QE           SS+  ++SS
Sbjct: 51  MKKSGLFAVSAAAASATAIASSSSSLNFSCTSKLQFPNQE---------HVSSTEQAASS 110

Query: 61  SSSSSTDKFAPKFDGLRFIETLVTAHR 88
            +S S DKFAP+FDGLRFIETLVTAHR
Sbjct: 111 QNSGSADKFAPRFDGLRFIETLVTAHR 128

[Close]

BLAST of CSPI06G10520 vs. TrEMBL
Match: A0A0B0PU40_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_13129 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 45/87 (51.72%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSSSSS 60
          MKKSG  AASV AASASA      SS+  CN       +E KE ENS++   +       
Sbjct: 1  MKKSGLFAASVVAASASA------SSSFTCNSNFQLSSEEKKEHENSANKKPAP------ 60

Query: 61 SSSSSTDKFAPKFDGLRFIETLVTAHR 88
               T+KFAP+FDGLRFIETLVTAHR
Sbjct: 61 -----TEKFAPRFDGLRFIETLVTAHR 70

[Close]

BLAST of CSPI06G10520 vs. TrEMBL
Match: A0A0D2TNR4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G128900 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 45/87 (51.72%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSSSSS 60
          MKKSG  AASV AASASA      SS   CN       +E KE ENS+++  +       
Sbjct: 1  MKKSGLFAASVVAASASA------SSNFTCNSNFQLSSEEKKEHENSANTKPAP------ 60

Query: 61 SSSSSTDKFAPKFDGLRFIETLVTAHR 88
               T+KFAP+FDGLRFIETLVTAHR
Sbjct: 61 -----TEKFAPRFDGLRFIETLVTAHR 70

[Close]

BLAST of CSPI06G10520 vs. TAIR10
Match: AT4G28290.1 (AT4G28290.1 unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 6.8e-09
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVC--NPKVLFPRQEGKEGENSSSSSSSSSSSS 60
          MKK+G IAAS++ A+++ A+++ S++T V   +P+    RQE KE +     SS      
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNTSVSFSSPESNLSRQEAKEKQRKKKGSSEDGGD- 60

Query: 61 SSSSSSSTDKFAPKFDGLRFIETLVTAHR 88
                  +KFAP+FDGLRFIETLVTAHR
Sbjct: 61 --------EKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of CSPI06G10520 vs. NCBI nr
Match: gi|778712862|ref|XP_004139940.2| (PREDICTED: cell wall integrity and stress response component 1 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 6.6e-30
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSSSSS 60
          MKKSGFIAASVAAASASAAVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSS SS
Sbjct: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSS-SS 60

Query: 61 SSSSSTDKFAPKFDGLRFIETLVTAHR 88
          SSSSSTDKFAPKFDGLRFIETLVTAHR
Sbjct: 61 SSSSSTDKFAPKFDGLRFIETLVTAHR 86

[Close]

BLAST of CSPI06G10520 vs. NCBI nr
Match: gi|659095137|ref|XP_008448419.1| (PREDICTED: uncharacterized protein LOC103490624 [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 7.1e-24
Identity = 72/87 (82.76%), Postives = 72/87 (82.76%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSSSSS 60
          MKKSGFIAASVAAASASAAVASPSSSTLVCN KV FPRQEGKEGEN             S
Sbjct: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNSKVQFPRQEGKEGEN-------------S 60

Query: 61 SSSSSTDKFAPKFDGLRFIETLVTAHR 88
          SSSSSTDKFAPKFDGLRFIETLVTAHR
Sbjct: 61 SSSSSTDKFAPKFDGLRFIETLVTAHR 74

[Close]

BLAST of CSPI06G10520 vs. NCBI nr
Match: gi|225446347|ref|XP_002272559.1| (PREDICTED: uncharacterized protein LOC100262522 [Vitis vinifera])

HSP 1 Score: 74.7 bits (182), Expect = 8.9e-11
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSSSSS 60
          MKKSGF AASVAAASA+A +++PSSS  +CN K+   R E   G++  +S S  SSS   
Sbjct: 1  MKKSGFFAASVAAASATA-ISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQRSSS--- 60

Query: 61 SSSSSTDKFAPKFDGLRFIETLVTAHR 88
                D+FAP+FDGLRFIETLVTAHR
Sbjct: 61 -----ADRFAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of CSPI06G10520 vs. NCBI nr
Match: gi|694428850|ref|XP_009341971.1| (PREDICTED: uncharacterized protein LOC103933998 [Pyrus x bretschneideri])

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-09
Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSSSSS 60
          MKK GF+AASVAAASA+A  A+ SSS+ V +  + F  QE     N   SS+S       
Sbjct: 1  MKKPGFLAASVAAASATALSATSSSSSFVSDSTMRFSHQEAGVKRNQEKSSAS------- 60

Query: 61 SSSSSTDKFAPKFDGLRFIETLVTAHR 88
               T+KFAPKFDGLRFIETLVTAHR
Sbjct: 61 -----TEKFAPKFDGLRFIETLVTAHR 75

[Close]

BLAST of CSPI06G10520 vs. NCBI nr
Match: gi|590690744|ref|XP_007043592.1| (Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao])

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-09
Identity = 49/89 (55.06%), Postives = 56/89 (62.92%), Query Frame = 1


Query: 1  MKKSGFIAASVAAASASA--AVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSSS 60
          MKKSG  AASVAAASA+A  A +SPSS    CN    F  ++ KE E           SS
Sbjct: 1  MKKSGLFAASVAAASATAISASSSPSSPNFACNSNFQFSSEDKKEHE-----------SS 60

Query: 61 SSSSSSSTDKFAPKFDGLRFIETLVTAHR 88
          +   S S DKFAP+FDGLRFIETL+TAHR
Sbjct: 61 AIKKSPSKDKFAPRFDGLRFIETLITAHR 78

The following BLAST results are available for this feature:

BLAST of CSPI06G10520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G10520 vs. TrEMBL


Match Name	E-value	Identity	Description
E0CTD2_VITVI	6.2e-11	57.47	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03790 PE=4 SV=...	[more]
A0A061EAV9_THECC	3.4e-09	55.06	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative OS=Theobroma cacao G...	[more]
A0A059DGL2_EUCGR	3.4e-09	55.17	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01816 PE=4 SV=1	[more]
A0A0B0PU40_GOSAR	1.9e-07	51.72	Uncharacterized protein OS=Gossypium arboreum GN=F383_13129 PE=4 SV=1	[more]
A0A0D2TNR4_GOSRA	1.9e-07	51.72	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G128900 PE=4 SV=1	[more]

BLAST of CSPI06G10520 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28290.1	6.8e-09	44.94	unknown protein	[more]

BLAST of CSPI06G10520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778712862\|ref\|XP_004139940.2\|	6.6e-30	98.85	PREDICTED: cell wall integrity and stress response component 1 [Cucumis sativus]	[more]
gi\|659095137\|ref\|XP_008448419.1\|	7.1e-24	82.76	PREDICTED: uncharacterized protein LOC103490624 [Cucumis melo]	[more]
gi\|225446347\|ref\|XP_002272559.1\|	8.9e-11	57.47	PREDICTED: uncharacterized protein LOC100262522 [Vitis vinifera]	[more]
gi\|694428850\|ref\|XP_009341971.1\|	2.9e-09	55.17	PREDICTED: uncharacterized protein LOC103933998 [Pyrus x bretschneideri]	[more]
gi\|590690744\|ref\|XP_007043592.1\|	4.9e-09	55.06	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G10520.1	CSPI06G10520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34683	FAMILY NOT NAMED	coord: 1..87 score: 1.7
None	No IPR available	PANTHER	PTHR34683:SF2	SUBFAMILY NOT NAMED	coord: 1..87 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G10520	CsaV3_7G004410	Cucumber (Chinese Long) v3	cpicucB379
CSPI06G10520	Cucsa.119040	Cucumber (Gy14) v1	cgycpiB156
CSPI06G10520	CmoCh20G002170	Cucurbita moschata (Rifu)	cmocpiB563
CSPI06G10520	Carg13585	Silver-seed gourd	carcpiB0032

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G10520	Melon (DHL92) v3.6.1	cpimedB436
CSPI06G10520	Melon (DHL92) v3.6.1	cpimedB451
CSPI06G10520	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G10520	Cucumber (Gy14) v2	cgybcpiB330
CSPI06G10520	Silver-seed gourd	carcpiB0452
CSPI06G10520	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G10520	Watermelon (97103) v2	cpiwmbB467
CSPI06G10520	Wax gourd	cpiwgoB574
CSPI06G10520	Wax gourd	cpiwgoB604
CSPI06G10520	Wild cucumber (PI 183967)	cpicpiB191
CSPI06G10520	Cucumber (Gy14) v1	cgycpiB218
CSPI06G10520	Cucurbita maxima (Rimu)	cmacpiB574
CSPI06G10520	Cucurbita maxima (Rimu)	cmacpiB626
CSPI06G10520	Cucurbita moschata (Rifu)	cmocpiB619
CSPI06G10520	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G10520	Cucumber (Chinese Long) v2	cpicuB322
CSPI06G10520	Melon (DHL92) v3.5.1	cpimeB438
CSPI06G10520	Melon (DHL92) v3.5.1	cpimeB458
CSPI06G10520	Watermelon (Charleston Gray)	cpiwcgB474
CSPI06G10520	Watermelon (97103) v1	cpiwmB545
CSPI06G10520	Cucurbita pepo (Zucchini)	cpecpiB290
CSPI06G10520	Cucurbita pepo (Zucchini)	cpecpiB760
CSPI06G10520	Bottle gourd (USVL1VR-Ls)	cpilsiB421
CSPI06G10520	Bottle gourd (USVL1VR-Ls)	cpilsiB434