CSPI06G09720 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G09720
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 8333335 .. 8333580 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGGAGAGCCATGTGGAATTCAAACGTTCAGTTATGAAGGTCATACAATTTCTTCAATGCTCGTTCATCAAATTACCATGAAAATGTATTCGAATTTGCTCAGGAGAATAAAAAGTGGACGCAAAATGTTTAAGAAGATGAGGGATATAGTGCGTAATGCCTTGCAGATAGACACATGGATCACAGTTATGGTTTCTCAAGGGTCCAAACCAAAACTACAAATCACCGTTTGGGACTAA

mRNA sequence

ATGGAGAAGGGAGAGCCATGTGGAATTCAAACGTTCAGTTATGAAGGTCATACAATTTCTTCAATGCTCGTTCATCAAATTACCATGAAAATGTATTCGAATTTGCTCAGGAGAATAAAAAGTGGACGCAAAATGTTTAAGAAGATGAGGGATATAGTGCGTAATGCCTTGCAGATAGACACATGGATCACAGTTATGGTTTCTCAAGGGTCCAAACCAAAACTACAAATCACCGTTTGGGACTAA

Coding sequence (CDS)

ATGGAGAAGGGAGAGCCATGTGGAATTCAAACGTTCAGTTATGAAGGTCATACAATTTCTTCAATGCTCGTTCATCAAATTACCATGAAAATGTATTCGAATTTGCTCAGGAGAATAAAAAGTGGACGCAAAATGTTTAAGAAGATGAGGGATATAGTGCGTAATGCCTTGCAGATAGACACATGGATCACAGTTATGGTTTCTCAAGGGTCCAAACCAAAACTACAAATCACCGTTTGGGACTAA
Homology
[Close]
BLAST of CSPI06G09720 vs. TrEMBL
Match: A0A0A0KFY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118875 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 9.5e-38
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 1  MEKGEPCGIQTFSYEGHTISSMLVHQITMKMYSNLLRRIKSGRKMFKKMRDIVRNALQID 60
          MEKGEPCGIQTFSYEGHTISSMLVHQITMKMYSNLLRRIKSGRKMFKKMRD VRNALQID
Sbjct: 1  MEKGEPCGIQTFSYEGHTISSMLVHQITMKMYSNLLRRIKSGRKMFKKMRDRVRNALQID 60

Query: 61 TWITVMVSQGSKPKLQITVWD 82
          TWIT+MVSQGSKPKLQITVWD
Sbjct: 61 TWITIMVSQGSKPKLQITVWD 81

[Close]
BLAST of CSPI06G09720 vs. NCBI nr
Match: gi|700191457|gb|KGN46661.1| (hypothetical protein Csa_6G118875 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-37
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 1  MEKGEPCGIQTFSYEGHTISSMLVHQITMKMYSNLLRRIKSGRKMFKKMRDIVRNALQID 60
          MEKGEPCGIQTFSYEGHTISSMLVHQITMKMYSNLLRRIKSGRKMFKKMRD VRNALQID
Sbjct: 1  MEKGEPCGIQTFSYEGHTISSMLVHQITMKMYSNLLRRIKSGRKMFKKMRDRVRNALQID 60

Query: 61 TWITVMVSQGSKPKLQITVWD 82
          TWIT+MVSQGSKPKLQITVWD
Sbjct: 61 TWITIMVSQGSKPKLQITVWD 81

The following BLAST results are available for this feature:
BLAST of CSPI06G09720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G09720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFY9_CUCSA9.5e-3897.53Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118875 PE=4 SV=1[more]
BLAST of CSPI06G09720 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G09720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191457|gb|KGN46661.1|1.4e-3797.53hypothetical protein Csa_6G118875 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G09720.1CSPI06G09720.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G09720Cucumber (Chinese Long) v3cpicucB364
CSPI06G09720Watermelon (97103) v2cpiwmbB455
CSPI06G09720Watermelon (97103) v2cpiwmbB470
CSPI06G09720Cucumber (Gy14) v1cgycpiB156
CSPI06G09720Cucurbita maxima (Rimu)cmacpiB561
CSPI06G09720Cucurbita maxima (Rimu)cmacpiB640
CSPI06G09720Cucurbita moschata (Rifu)cmocpiB551
CSPI06G09720Cucurbita moschata (Rifu)cmocpiB632
CSPI06G09720Cucumber (Chinese Long) v2cpicuB314
CSPI06G09720Melon (DHL92) v3.5.1cpimeB419
CSPI06G09720Watermelon (Charleston Gray)cpiwcgB479
CSPI06G09720Watermelon (97103) v1cpiwmB458
CSPI06G09720Cucurbita pepo (Zucchini)cpecpiB294
CSPI06G09720Cucurbita pepo (Zucchini)cpecpiB748
CSPI06G09720Bottle gourd (USVL1VR-Ls)cpilsiB411
CSPI06G09720Melon (DHL92) v3.6.1cpimedB414
CSPI06G09720Cucumber (Gy14) v2cgybcpiB288
CSPI06G09720Silver-seed gourdcarcpiB0381
CSPI06G09720Silver-seed gourdcarcpiB0891