CSPI06G08960 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G08960
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 7528239 .. 7529339 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAATCATCTTTTACACACTGCCACTCCATTCTTTCTCTGTCCTATAAAATCCACTCTGCTTCGTCATTCTTCCATCCCATCCTTTCTTTCTCTTCTTCAATTCCTTCTCCTTTTCCACAAGGATTTAGCAATGGCTACTGCTGAGGTAAATTTGGCTTCCGATAACTATGCATAATGTTTCTCTCTCTCTGCTTTTTTTTTCTTTAAATTAATCATAATTAAAAATCATATAACTATGTTTCTCGATACATTTGAACTTCTTTTATATATGGATATGTGAAATTCTTTTTAAATATTTTGAATAAATTTGGAACTGGGTCATTGTTCTTTTCAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTGGAGGTACCACCGCCCAAGGTTGAGGAAGAAGAAGCTCCGCCTCCGGTGGAAGAAGATCCGCCAGCGGAGGAGGTGGCAAAAGAAGAAGACGTCACGGATCCACCAGCAGTGGAAGAGACAGAAACTCCGGTTGAAGTTGAAACCAAGGAAGTAGTAGTAGAAGAAGAGGCAAAGGAAGAGAAGAATGAAGAAGAAGAAGTAGTAGAAGAAGAGGAAAAGGAAGAGAATAAAACAGAAGAGGCAGCTGAGGTTGTGGTGGAGGAAGAGACGAAAGCACCGGTGGAGGAGGCAGAGGAGAAGGCCGTGGAAGTGGTGGACGAGAAGCCTGCAGAAGAAGCAGAAGAGAAGGCAGAAGAAGAGGTTGAAGCAGAGAAGGTTGAGTAATTAAAACCTGAATACATATTATTGGGTGTAATATGAAAAAAGTGAATGGAGGGTGGTTTGAGAAATTTGGTAACTTTAAATTGTAGAGCGTTTTGTTTTTGTGATATGAAAAGTGGTTGATTGAATGGGGATTGGAATGGAGTGTAGTAAGCTATAAAAGGAGTATAGGGATTGGGGAACTTTGTATTTCTGTTTCTTGGATGTCTGTTCACAGTTGCAAATTTTTTCTTTTTTGCTAGTTTGTTTATTATAATAACTTGCAAGTTATAATATCTATATATATATATACTTGTTTCTTTTTTTAAAAAAACAATATATTATTATTT

mRNA sequence

ATGGCTACTGCTGAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTGGAGGTACCACCGCCCAAGGTTGAGGAAGAAGAAGCTCCGCCTCCGGTGGAAGAAGATCCGCCAGCGGAGGAGGTGGCAAAAGAAGAAGACGTCACGGATCCACCAGCAGTGGAAGAGACAGAAACTCCGGTTGAAGTTGAAACCAAGGAAGTAGTAGTAGAAGAAGAGGCAAAGGAAGAGAAGAATGAAGAAGAAGAAGTAGTAGAAGAAGAGGAAAAGGAAGAGAATAAAACAGAAGAGGCAGCTGAGGTTGTGGTGGAGGAAGAGACGAAAGCACCGGTGGAGGAGGCAGAGGAGAAGGCCGTGGAAGTGGTGGACGAGAAGCCTGCAGAAGAAGCAGAAGAGAAGGCAGAAGAAGAGGTTGAAGCAGAGAAGGTTGAGTAA

Coding sequence (CDS)

ATGGCTACTGCTGAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTGGAGGTACCACCGCCCAAGGTTGAGGAAGAAGAAGCTCCGCCTCCGGTGGAAGAAGATCCGCCAGCGGAGGAGGTGGCAAAAGAAGAAGACGTCACGGATCCACCAGCAGTGGAAGAGACAGAAACTCCGGTTGAAGTTGAAACCAAGGAAGTAGTAGTAGAAGAAGAGGCAAAGGAAGAGAAGAATGAAGAAGAAGAAGTAGTAGAAGAAGAGGAAAAGGAAGAGAATAAAACAGAAGAGGCAGCTGAGGTTGTGGTGGAGGAAGAGACGAAAGCACCGGTGGAGGAGGCAGAGGAGAAGGCCGTGGAAGTGGTGGACGAGAAGCCTGCAGAAGAAGCAGAAGAGAAGGCAGAAGAAGAGGTTGAAGCAGAGAAGGTTGAGTAA

Homology

[Close]

BLAST of CSPI06G08960 vs. TrEMBL
Match: A0A0A0KAS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G109780 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.4e-50
Identity = 145/150 (96.67%), Postives = 145/150 (96.67%), Query Frame = 1


Query: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
           MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV
Sbjct: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60

Query: 61  EETETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA 120
           EE ETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA
Sbjct: 61  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA 120

Query: 121 EEKAVEVVDEKPAEEAEEKAEEEVEAEKVE 151
           EEKAVEV   KPAEEAEEKAEEEV AEKVE
Sbjct: 121 EEKAVEV---KPAEEAEEKAEEEVGAEKVE 147

[Close]

BLAST of CSPI06G08960 vs. NCBI nr
Match: gi|449445437|ref|XP_004140479.1| (PREDICTED: fibrous sheath CABYR-binding protein-like [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 3.4e-50
Identity = 145/150 (96.67%), Postives = 145/150 (96.67%), Query Frame = 1


Query: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
           MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV
Sbjct: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60

Query: 61  EETETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA 120
           EE ETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA
Sbjct: 61  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA 120

Query: 121 EEKAVEVVDEKPAEEAEEKAEEEVEAEKVE 151
           EEKAVEV   KPAEEAEEKAEEEV AEKVE
Sbjct: 121 EEKAVEV---KPAEEAEEKAEEEVGAEKVE 147

[Close]

BLAST of CSPI06G08960 vs. NCBI nr
Match: gi|659111901|ref|XP_008455963.1| (PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 4.1e-40
Identity = 132/156 (84.62%), Postives = 137/156 (87.82%), Query Frame = 1


Query: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
           MATAEVVTP+TA+PEEATEVVEVEVP PKVEEEEAPPPVE DPPAEEVAKEEDVTDPPA+
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKA----- 120
           EETETPVE ETKEVVVEEE+KEEKN EEEVVEEEEKEE KTEEAAE  V EETKA     
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKN-EEEVVEEEEKEEKKTEEAAEGAVLEETKASEAET 120

Query: 121 PV-EEAEEKAVEVVDEKPAEEAEEKAEEEVEAEKVE 151
           PV EE EEKAVEVV+EKP EE EEK EEEVEAEK E
Sbjct: 121 PVEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

The following BLAST results are available for this feature:

BLAST of CSPI06G08960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G08960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAS3_CUCSA	2.4e-50	96.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G109780 PE=4 SV=1	[more]

BLAST of CSPI06G08960 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G08960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445437\|ref\|XP_004140479.1\|	3.4e-50	96.67	PREDICTED: fibrous sheath CABYR-binding protein-like [Cucumis sativus]	[more]
gi\|659111901\|ref\|XP_008455963.1\|	4.1e-40	84.62	PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G08960.1	CSPI06G08960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 117..137 score: -coord: 74..111 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G08960	CsaV3_6G009330	Cucumber (Chinese Long) v3	cpicucB364

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G08960	Cucumber (Gy14) v1	cgycpiB156
CSPI06G08960	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G08960	Cucumber (Gy14) v2	cgybcpiB288