CSPI06G08880 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G08880
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 7462294 .. 7462545 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAATATCAAAGTCCAACACAACTAACACCATTTCAATTCCACCTACCAGATGGAGTAAAAGTCTCCAATTTCCTTATGGTATCGATGACCCTGAAGAAACAAAGAGCAGCAAAACAATTTCTTCCTTGTGCTCTAGAAGATCATGGAGCTCAAGCTAGAGCAAAACAAGCCCAGGGGCACATTGTTGAAATTGCGCATCAGTGGTGGTCTTCATTGGAGTTGACTGCCGAAGTTGACCGCCATTGA

mRNA sequence

ATGAATAAATATCAAAGTCCAACACAACTAACACCATTTCAATTCCACCTACCAGATGGAGTAAAAGTCTCCAATTTCCTTATGGTATCGATGACCCTGAAGAAACAAAGAGCAGCAAAACAATTTCTTCCTTGTGCTCTAGAAGATCATGGAGCTCAAGCTAGAGCAAAACAAGCCCAGGGGCACATTGTTGAAATTGCGCATCAGTGGTGGTCTTCATTGGAGTTGACTGCCGAAGTTGACCGCCATTGA

Coding sequence (CDS)

ATGAATAAATATCAAAGTCCAACACAACTAACACCATTTCAATTCCACCTACCAGATGGAGTAAAAGTCTCCAATTTCCTTATGGTATCGATGACCCTGAAGAAACAAAGAGCAGCAAAACAATTTCTTCCTTGTGCTCTAGAAGATCATGGAGCTCAAGCTAGAGCAAAACAAGCCCAGGGGCACATTGTTGAAATTGCGCATCAGTGGTGGTCTTCATTGGAGTTGACTGCCGAAGTTGACCGCCATTGA

Homology

[Close]

BLAST of CSPI06G08880 vs. TrEMBL
Match: A0A0A0KA43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G109700 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.7e-40
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1  MNKYQSPTQLTPFQFHLPDGVKVSNFLMVSMTLKKQRAAKQFLPCALEDHGAQARAKQAQ 60
          MNKYQSPTQLTPFQFHLPDGVKVSNFLMVSMTLKKQRAAKQFLPCALEDHGAQARAKQAQ
Sbjct: 1  MNKYQSPTQLTPFQFHLPDGVKVSNFLMVSMTLKKQRAAKQFLPCALEDHGAQARAKQAQ 60

Query: 61 GHIVEIAHQWWSSLELTAEVDRH 84
          GHIVEIAHQWWSSLEL AEVDRH
Sbjct: 61 GHIVEIAHQWWSSLELAAEVDRH 83

[Close]

BLAST of CSPI06G08880 vs. NCBI nr
Match: gi|700191371|gb|KGN46575.1| (hypothetical protein Csa_6G109700 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 3.9e-40
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1  MNKYQSPTQLTPFQFHLPDGVKVSNFLMVSMTLKKQRAAKQFLPCALEDHGAQARAKQAQ 60
          MNKYQSPTQLTPFQFHLPDGVKVSNFLMVSMTLKKQRAAKQFLPCALEDHGAQARAKQAQ
Sbjct: 1  MNKYQSPTQLTPFQFHLPDGVKVSNFLMVSMTLKKQRAAKQFLPCALEDHGAQARAKQAQ 60

Query: 61 GHIVEIAHQWWSSLELTAEVDRH 84
          GHIVEIAHQWWSSLEL AEVDRH
Sbjct: 61 GHIVEIAHQWWSSLELAAEVDRH 83

The following BLAST results are available for this feature:

BLAST of CSPI06G08880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G08880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA43_CUCSA	2.7e-40	98.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G109700 PE=4 SV=1	[more]

BLAST of CSPI06G08880 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G08880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191371\|gb\|KGN46575.1\|	3.9e-40	98.80	hypothetical protein Csa_6G109700 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G08880.1	CSPI06G08880.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G08880	Csa6G109700	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G08880	CsaV3_6G009250	Cucumber (Chinese Long) v3	cpicucB364

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G08880	Watermelon (97103) v2	cpiwmbB495
CSPI06G08880	Wax gourd	cpiwgoB549
CSPI06G08880	Cucumber (Gy14) v1	cgycpiB156
CSPI06G08880	Cucurbita maxima (Rimu)	cmacpiB383
CSPI06G08880	Cucurbita maxima (Rimu)	cmacpiB918
CSPI06G08880	Cucurbita moschata (Rifu)	cmocpiB372
CSPI06G08880	Cucurbita moschata (Rifu)	cmocpiB898
CSPI06G08880	Melon (DHL92) v3.5.1	cpimeB436
CSPI06G08880	Watermelon (Charleston Gray)	cpiwcgB503
CSPI06G08880	Watermelon (97103) v1	cpiwmB563
CSPI06G08880	Cucurbita pepo (Zucchini)	cpecpiB154
CSPI06G08880	Cucurbita pepo (Zucchini)	cpecpiB329
CSPI06G08880	Bottle gourd (USVL1VR-Ls)	cpilsiB404
CSPI06G08880	Melon (DHL92) v3.6.1	cpimedB435
CSPI06G08880	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G08880	Silver-seed gourd	carcpiB0593
CSPI06G08880	Silver-seed gourd	carcpiB0637