CSPI06G08770 (gene) Wild cucumber (PI 183967)

NameCSPI06G08770
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionAmaranthin-like lectin
LocationChr6 : 7367242 .. 7368178 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCTCGCTCATCGTGTTGCTTCCAGTAGAGTTTGGACATTTTTGGTATGAAAAGAAACTTTAGAAGGTTATGGAATTAAATTATTGATGTGCAATAAGTTATAACAAAGATGTTCCTATCTAATTATTTTTTGTAGACTAATTATTGCACAAACTTCCAAATATATTACAAACCCAAGTTTTGGTGGATGAATATTCTTGAGTTGATTTGAGTTTGAGTTAAATGGGGTGTTTTTTTAGACTAATTTTAAAATTTTAGTGTATGCTTATAATTCTACCGTATTATATGTACTTGAATCTCTTAAATCTATTATATTATTTGTTCGAACAATGATCAAGAACCAAAATAGGATTGTTGAACCTAATTTGTATGTTATTTTCAGTCTTTGTGATTTTAGTTGTATGGTTGAAAGAAATGTGTTATATATTTTCTTTAATCTGATGTTTTTTCTATAACAATGAAGTGCTCAATTTTTTGTTTTTTGAAGTGGCCGCCACTCAAGATGCTACAAATGACACAAGTGGATACCTTACTCAAACCTTGAGTCTCCCTTATACTAATGAAGTAACTACTACTTGGAACAATACACTTGAGATGAAACTTGGTTTTGGATTAGAATTTAGTGGTGGGATTCCATTAATTACATCTGCAGGCATTATTGTTTCTGGAGAGATTTCGGGATCCTATTCTTGGGGAAAAACTTTGACCAAGAAGACGTCCAAAGAGTCGTCGTACGAAACCATCATGCCACCGAATACTTACGTGAAAGTGAGTTTGATAGCTACCAAGGGTAAGTGTGACATCCCCTTCTCGTACATGCAACGAGATGTTTACTGCGATGGAGCTGTGAAGACTGAAGAACGTGATGATGGGATATACACTGGCCTTAATTGCTACAGTTACAATTATGAAGTTGAAGAGAAGAAGATTTGA

mRNA sequence

ATGACGCTCGCTCATCGTGTTGCTTCCATGGCCGCCACTCAAGATGCTACAAATGACACAAGTGGATACCTTACTCAAACCTTGAGTCTCCCTTATACTAATGAAGTAACTACTACTTGGAACAATACACTTGAGATGAAACTTGGTTTTGGATTAGAATTTAGTGGTGGGATTCCATTAATTACATCTGCAGGCATTATTGTTTCTGGAGAGATTTCGGGATCCTATTCTTGGGGAAAAACTTTGACCAAGAAGACGTCCAAAGAGTCGTCGTACGAAACCATCATGCCACCGAATACTTACGTGAAAGTGAGTTTGATAGCTACCAAGGGTAAGTGTGACATCCCCTTCTCGTACATGCAACGAGATGTTTACTGCGATGGAGCTGTGAAGACTGAAGAACGTGATGATGGGATATACACTGGCCTTAATTGCTACAGTTACAATTATGAAGTTGAAGAGAAGAAGATTTGA

Coding sequence (CDS)

ATGACGCTCGCTCATCGTGTTGCTTCCATGGCCGCCACTCAAGATGCTACAAATGACACAAGTGGATACCTTACTCAAACCTTGAGTCTCCCTTATACTAATGAAGTAACTACTACTTGGAACAATACACTTGAGATGAAACTTGGTTTTGGATTAGAATTTAGTGGTGGGATTCCATTAATTACATCTGCAGGCATTATTGTTTCTGGAGAGATTTCGGGATCCTATTCTTGGGGAAAAACTTTGACCAAGAAGACGTCCAAAGAGTCGTCGTACGAAACCATCATGCCACCGAATACTTACGTGAAAGTGAGTTTGATAGCTACCAAGGGTAAGTGTGACATCCCCTTCTCGTACATGCAACGAGATGTTTACTGCGATGGAGCTGTGAAGACTGAAGAACGTGATGATGGGATATACACTGGCCTTAATTGCTACAGTTACAATTATGAAGTTGAAGAGAAGAAGATTTGA
BLAST of CSPI06G08770 vs. TrEMBL
Match: A0A0A0KCL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108620 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.0e-56
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 1

Query: 46  MKLGFGLEFSGGIPLITSAGIIVSGEISGSYSWGKTLTKKTSKESSYETIMPPNTYVKVS 105
           MKLGFGLEF+GGIPLITSAGIIVSGEISGSYSWG+TLTKKTSKESSYETIMPPNTYVKVS
Sbjct: 1   MKLGFGLEFNGGIPLITSAGIIVSGEISGSYSWGETLTKKTSKESSYETIMPPNTYVKVS 60

Query: 106 LIATKGKCDIPFSYMQRDVYCDGAVKTEERDDGIYTGLNCYSYNYEVEEKKI 158
           LIATKGKCDIPFSYMQRDVYCDGAVKTEERDDGIYTG NCYSYNYEVEEKKI
Sbjct: 61  LIATKGKCDIPFSYMQRDVYCDGAVKTEERDDGIYTGFNCYSYNYEVEEKKI 112

BLAST of CSPI06G08770 vs. TrEMBL
Match: A0A0D9XU75_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-27
Identity = 66/150 (44.00%), Postives = 87/150 (58.00%), Query Frame = 1

Query: 8   ASMAATQDATNDTSGYLTQTLSLPYTNEVTTTWNNTLEMKLGFGLEFSGGIPLITSAGII 67
           A + +T  A N T+     TL+L Y      TW++T+  KL      S GIP+I  A + 
Sbjct: 327 ALIMSTASALNLTTVNNKATLTLDYQETDKRTWDSTVSWKLTAEASISAGIPMIGEASVT 386

Query: 68  VSGEISGSYSWGKTLTKKTSKESSYETIMPPNTYVKVSLIATKGKCDIPFSYMQRDVYCD 127
           V+ E +G Y WG TL K   +   YE  +PP T V VSLIAT+G CD+PFSY Q DV  D
Sbjct: 387 VTNEFNGEYKWGSTLEKIIKQNVQYEATIPPKTRVTVSLIATQGSCDVPFSYKQEDVLYD 446

Query: 128 GAVKTEERDDGIYTGLNCYSYNYEVEEKKI 158
           G   T   +DG+YTG+NCY + YE  E+K+
Sbjct: 447 GRTVTYTMNDGLYTGVNCYDFKYETSEQKM 476

BLAST of CSPI06G08770 vs. TrEMBL
Match: F6HZZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06090 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.8e-27
Identity = 58/145 (40.00%), Postives = 87/145 (60.00%), Query Frame = 1

Query: 13  TQDATNDTSGYLTQTLSLPYTNEVTTTWNNTLEMKLGFGLEFSGGIPLITSAGIIVSGEI 72
           T +A N T    TQ + L YT   ++TW  ++ +KLG  +    G+P I +  + +S E 
Sbjct: 321 TAEAINRTHEPHTQQVKLSYTETKSSTWKGSVSLKLGVKITMESGVPFIANGKLEISSEF 380

Query: 73  SGSYSWGKTLTKKTSKESSYETIMPPNTYVKVSLIATKGKCDIPFSYMQRDVYCDGAVKT 132
           SG+Y WG+T +  T+ E+ Y   +P  T V VS+I TKG CD+PFSY QRD   DG +  
Sbjct: 381 SGAYEWGETESVTTAMETMYNVTVPAMTRVTVSMIGTKGSCDVPFSYTQRDTLTDGKIVV 440

Query: 133 EERDDGIYTGLNCYSYNYEVEEKKI 158
           +  DDG+Y G+NC++  YE +E+ +
Sbjct: 441 DNMDDGVYVGVNCFNVKYETKEENL 465

BLAST of CSPI06G08770 vs. TrEMBL
Match: M0UVK0_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26
Identity = 65/147 (44.22%), Postives = 88/147 (59.86%), Query Frame = 1

Query: 12  ATQDATNDTSGYLTQTLSLPYTNEVTTTWNNTLEMKLGFGLEFSGGIPLI-TSAGIIVSG 71
           AT  A NDTS   T+ L L Y  E  +TW+ TLE+KLG+      G P +   A I +S 
Sbjct: 210 ATTAAVNDTSAENTKRLRLVYEEEEMSTWDATLELKLGYNSTIRAGFPKLGLGAQISISA 269

Query: 72  EISGSYSWGKTLTKKTSKESSYETIMPPNTYVKVSLIATKGKCDIPFSYMQRDVYCDGAV 131
           E  G Y+WG+T+ KK   E  YE  +PP T V V  IAT+   D+PF+Y QRDV  DG V
Sbjct: 270 EFYGEYNWGQTMEKKVRHEVEYEAAVPPRTKVTVMAIATRSTVDVPFTYWQRDVTIDGKV 329

Query: 132 KTEERDDGIYTGLNCYSYNYEVEEKKI 158
           +     DG+YTG+N Y++N++  E+K+
Sbjct: 330 EETLMRDGLYTGINSYNFNFDTVEEKL 356

BLAST of CSPI06G08770 vs. TrEMBL
Match: M0UVJ8_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26
Identity = 65/147 (44.22%), Postives = 88/147 (59.86%), Query Frame = 1

Query: 12  ATQDATNDTSGYLTQTLSLPYTNEVTTTWNNTLEMKLGFGLEFSGGIPLI-TSAGIIVSG 71
           AT  A NDTS   T+ L L Y  E  +TW+ TLE+KLG+      G P +   A I +S 
Sbjct: 356 ATTAAVNDTSAENTKRLRLVYEEEEMSTWDATLELKLGYNSTIRAGFPKLGLGAQISISA 415

Query: 72  EISGSYSWGKTLTKKTSKESSYETIMPPNTYVKVSLIATKGKCDIPFSYMQRDVYCDGAV 131
           E  G Y+WG+T+ KK   E  YE  +PP T V V  IAT+   D+PF+Y QRDV  DG V
Sbjct: 416 EFYGEYNWGQTMEKKVRHEVEYEAAVPPRTKVTVMAIATRSTVDVPFTYWQRDVTIDGKV 475

Query: 132 KTEERDDGIYTGLNCYSYNYEVEEKKI 158
           +     DG+YTG+N Y++N++  E+K+
Sbjct: 476 EETLMRDGLYTGINSYNFNFDTVEEKL 502

BLAST of CSPI06G08770 vs. NCBI nr
Match: gi|659117569|ref|XP_008458670.1| (PREDICTED: uncharacterized protein LOC103497999 [Cucumis melo])

HSP 1 Score: 267.7 bits (683), Expect = 1.3e-68
Identity = 131/148 (88.51%), Postives = 139/148 (93.92%), Query Frame = 1

Query: 10  MAATQDATNDTSGYLTQTLSLPYTNEVTTTWNNTLEMKLGFGLEFSGGIPLITSAGIIVS 69
           +AATQDATNDTSGYLTQTLSL YT+EVT TWNNT+EMKLGFGLEFSGGIPLITSAGI VS
Sbjct: 313 VAATQDATNDTSGYLTQTLSLAYTDEVTNTWNNTIEMKLGFGLEFSGGIPLITSAGITVS 372

Query: 70  GEISGSYSWGKTLTKKTSKESSYETIMPPNTYVKVSLIATKGKCDIPFSYMQRDVYCDGA 129
           GEISGSYSWG+TLTKKTSKESSY+TI+PP T VKVSLIA+KGKCDIPFSYMQRDVY DG 
Sbjct: 373 GEISGSYSWGETLTKKTSKESSYQTIVPPKTRVKVSLIASKGKCDIPFSYMQRDVYSDGT 432

Query: 130 VKTEERDDGIYTGLNCYSYNYEVEEKKI 158
           VK EE DDGIYTGLNCYSYNYEVEE+KI
Sbjct: 433 VKIEEHDDGIYTGLNCYSYNYEVEEQKI 460

BLAST of CSPI06G08770 vs. NCBI nr
Match: gi|700191360|gb|KGN46564.1| (hypothetical protein Csa_6G108620 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.5e-56
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 1

Query: 46  MKLGFGLEFSGGIPLITSAGIIVSGEISGSYSWGKTLTKKTSKESSYETIMPPNTYVKVS 105
           MKLGFGLEF+GGIPLITSAGIIVSGEISGSYSWG+TLTKKTSKESSYETIMPPNTYVKVS
Sbjct: 1   MKLGFGLEFNGGIPLITSAGIIVSGEISGSYSWGETLTKKTSKESSYETIMPPNTYVKVS 60

Query: 106 LIATKGKCDIPFSYMQRDVYCDGAVKTEERDDGIYTGLNCYSYNYEVEEKKI 158
           LIATKGKCDIPFSYMQRDVYCDGAVKTEERDDGIYTG NCYSYNYEVEEKKI
Sbjct: 61  LIATKGKCDIPFSYMQRDVYCDGAVKTEERDDGIYTGFNCYSYNYEVEEKKI 112

BLAST of CSPI06G08770 vs. NCBI nr
Match: gi|659117567|ref|XP_008458669.1| (PREDICTED: uncharacterized protein LOC103497997 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 5.9e-29
Identity = 63/141 (44.68%), Postives = 88/141 (62.41%), Query Frame = 1

Query: 14  QDATNDTSGYLTQTLSLPYTNEVTTTWNNTLEMKLGFGLEFSGGIPLITSAGIIVSGEIS 73
           Q A N +        +  Y  E +  W++T+ MKL + +    GIPLI    I++SGEIS
Sbjct: 318 QGAMNGSDEVNHMDFNFSYEEEESQCWSSTVGMKLAYSMTIEAGIPLIMDTNIVMSGEIS 377

Query: 74  GSYSWGKTLTKKTSKESSYETIMPPNTYVKVSLIATKGKCDIPFSYMQRDVYCDGAVKTE 133
            SY+WG+T  K T K +SY   + P T VKVS + TKG CD+PFSY QRD+  DG  +T 
Sbjct: 378 ESYTWGQTNKKSTPKRTSYSLEVQPRTSVKVSAMLTKGYCDVPFSYTQRDILVDGQTRTT 437

Query: 134 ERDDGIYTGLNCYSYNYEVEE 155
           E DDG++TG NCY+++Y+ E+
Sbjct: 438 EHDDGLFTGFNCYNFHYQSED 458

BLAST of CSPI06G08770 vs. NCBI nr
Match: gi|645281008|ref|XP_008245436.1| (PREDICTED: uncharacterized protein LOC103343557 [Prunus mume])

HSP 1 Score: 132.9 bits (333), Expect = 5.0e-28
Identity = 65/154 (42.21%), Postives = 96/154 (62.34%), Query Frame = 1

Query: 4   AHRVASMAATQDATNDTSGYLTQTLSLPYTNEVTTTWNNTLEMKLGFGLEFSGGIPLITS 63
           + RV SMA T DA N T    T  L L Y +  ++TWN+++ MKLG   +   G+PLI  
Sbjct: 318 SQRVVSMA-TGDAVNRTQEENTIDLRLSYKDSRSSTWNSSVSMKLGLSTKVQTGVPLIAK 377

Query: 64  AGIIVSGEISGSYSWGKTLTKKTSKESSYETIMPPNTYVKVSLIATKGKCDIPFSYMQRD 123
             I +S E +  + WG+T T ++  E+ Y  ++PP + VKVSL+AT+G CD+PFSY QRD
Sbjct: 378 GEIEISTEFATEFQWGETNTSESEVETVYRVVVPPMSMVKVSLMATRGSCDVPFSYTQRD 437

Query: 124 VYCDGAVKTEERDDGIYTGLNCYSYNYEVEEKKI 158
              +G   T+  DDG+YTG+N Y++ YE  ++ +
Sbjct: 438 TLINGTTVTQTMDDGVYTGVNSYNFKYETIQESL 470

BLAST of CSPI06G08770 vs. NCBI nr
Match: gi|225465425|ref|XP_002264858.1| (PREDICTED: uncharacterized protein LOC100241465 [Vitis vinifera])

HSP 1 Score: 129.4 bits (324), Expect = 5.5e-27
Identity = 58/145 (40.00%), Postives = 87/145 (60.00%), Query Frame = 1

Query: 13  TQDATNDTSGYLTQTLSLPYTNEVTTTWNNTLEMKLGFGLEFSGGIPLITSAGIIVSGEI 72
           T +A N T    TQ + L YT   ++TW  ++ +KLG  +    G+P I +  + +S E 
Sbjct: 321 TAEAINRTHEPHTQQVKLSYTETKSSTWKGSVSLKLGVKITMESGVPFIANGKLEISSEF 380

Query: 73  SGSYSWGKTLTKKTSKESSYETIMPPNTYVKVSLIATKGKCDIPFSYMQRDVYCDGAVKT 132
           SG+Y WG+T +  T+ E+ Y   +P  T V VS+I TKG CD+PFSY QRD   DG +  
Sbjct: 381 SGAYEWGETESVTTAMETMYNVTVPAMTRVTVSMIGTKGSCDVPFSYTQRDTLTDGKIVV 440

Query: 133 EERDDGIYTGLNCYSYNYEVEEKKI 158
           +  DDG+Y G+NC++  YE +E+ +
Sbjct: 441 DNMDDGVYVGVNCFNVKYETKEENL 465

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KCL3_CUCSA1.0e-5697.32Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108620 PE=4 SV=1[more]
A0A0D9XU75_9ORYZ1.7e-2744.00Uncharacterized protein OS=Leersia perrieri PE=4 SV=1[more]
F6HZZ6_VITVI3.8e-2740.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06090 PE=4 SV=... [more]
M0UVK0_HORVD1.5e-2644.22Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1[more]
M0UVJ8_HORVD1.5e-2644.22Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659117569|ref|XP_008458670.1|1.3e-6888.51PREDICTED: uncharacterized protein LOC103497999 [Cucumis melo][more]
gi|700191360|gb|KGN46564.1|1.5e-5697.32hypothetical protein Csa_6G108620 [Cucumis sativus][more]
gi|659117567|ref|XP_008458669.1|5.9e-2944.68PREDICTED: uncharacterized protein LOC103497997 [Cucumis melo][more]
gi|645281008|ref|XP_008245436.1|5.0e-2842.21PREDICTED: uncharacterized protein LOC103343557 [Prunus mume][more]
gi|225465425|ref|XP_002264858.1|5.5e-2740.00PREDICTED: uncharacterized protein LOC100241465 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004991Aerolysin-like
IPR023307Aerolysin-like toxin, beta complex domain
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G08770.1CSPI06G08770.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004991Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2PFAMPF03318ETX_MTX2coord: 11..116
score: 2.
IPR023307Aerolysin-like toxin, beta complex domainGENE3DG3DSA:2.170.15.10coord: 10..154
score: 8.6
NoneNo IPR availablePANTHERPTHR39244FAMILY NOT NAMEDcoord: 13..157
score: 5.4
NoneNo IPR availablePANTHERPTHR39244:SF1SUBFAMILY NOT NAMEDcoord: 13..157
score: 5.4
NoneNo IPR availableunknownSSF56973Aerolisin/ETX pore-forming domaincoord: 13..153
score: 3.4

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None