CSPI06G08390 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G08390
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 7065702 .. 7066226 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTCAATCAAACATTATACATTTTGGTGTGTATTTACTTTGCTGATGAGAATGAAGCCCTGAATGCGAAAGAATTGAATCCAGTTGAGGATGAAGAAACCTTGAATAAGGATGAAGCTGGAGTTGCTGAGGAAGAAGGGGTACTAGAGGAAGATGTTCCAGTGGAAGCGGAGGCGAGGGAGAAAGAGAATGGAGAGAAAGTAGAGGAAGTAGAGGAAGTAGAGGAGGAGAAAGAGAAAGAGCCAAAGCCAAAGGAAGAAGAAGGATTAGAGGTTGGATTGGGAAATGGGGAGGAAGAGGAAGTAGGGTTTGAGGAGGAGGAGGAGGAGGAGGAAGATGAAAGAGATAAAGGGAAAGGGGATGATCCAAAGGAAAAGGTGGTGGATCCGAAGGAGAAACCAATAGAGGAAATTAAAATGGAGAAGAAGCTTGAGAGGTGGAAGATCCAAAGCCAAAACCTGACATCTCGATCGATATGTGGTGGAAGGGACTGTGAAGTGAAGGGTTTTAGAAGTTGTTAG

mRNA sequence

ATGGTGGTCAATCAAACATTATACATTTTGGTGTGTATTTACTTTGCTGATGAGAATGAAGCCCTGAATGCGAAAGAATTGAATCCAGTTGAGGATGAAGAAACCTTGAATAAGGATGAAGCTGGAGTTGCTGAGGAAGAAGGGGTACTAGAGGAAGATGTTCCAGTGGAAGCGGAGGCGAGGGAGAAAGAGAATGGAGAGAAAGTAGAGGAAGTAGAGGAAGTAGAGGAGGAGAAAGAGAAAGAGCCAAAGCCAAAGGAAGAAGAAGGATTAGAGGTTGGATTGGGAAATGGGGAGGAAGAGGAAGTAGGGTTTGAGGAGGAGGAGGAGGAGGAGGAAGATGAAAGAGATAAAGGGAAAGGGGATGATCCAAAGGAAAAGGTGGTGGATCCGAAGGAGAAACCAATAGAGGAAATTAAAATGGAGAAGAAGCTTGAGAGGTGGAAGATCCAAAGCCAAAACCTGACATCTCGATCGATATGTGGTGGAAGGGACTGTGAAGTGAAGGGTTTTAGAAGTTGTTAG

Coding sequence (CDS)

ATGGTGGTCAATCAAACATTATACATTTTGGTGTGTATTTACTTTGCTGATGAGAATGAAGCCCTGAATGCGAAAGAATTGAATCCAGTTGAGGATGAAGAAACCTTGAATAAGGATGAAGCTGGAGTTGCTGAGGAAGAAGGGGTACTAGAGGAAGATGTTCCAGTGGAAGCGGAGGCGAGGGAGAAAGAGAATGGAGAGAAAGTAGAGGAAGTAGAGGAAGTAGAGGAGGAGAAAGAGAAAGAGCCAAAGCCAAAGGAAGAAGAAGGATTAGAGGTTGGATTGGGAAATGGGGAGGAAGAGGAAGTAGGGTTTGAGGAGGAGGAGGAGGAGGAGGAAGATGAAAGAGATAAAGGGAAAGGGGATGATCCAAAGGAAAAGGTGGTGGATCCGAAGGAGAAACCAATAGAGGAAATTAAAATGGAGAAGAAGCTTGAGAGGTGGAAGATCCAAAGCCAAAACCTGACATCTCGATCGATATGTGGTGGAAGGGACTGTGAAGTGAAGGGTTTTAGAAGTTGTTAG

Homology

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BLAST of CSPI06G08390 vs. TrEMBL
Match: A0A0A0KDT9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106740 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.0e-49
Identity = 128/142 (90.14%), Postives = 130/142 (91.55%), Query Frame = 1


Query: 1   MVVNQTLYILVCIYFADENEALNAKELNPVEDEETLNKDEAGVAEEEGVLEEDVPVEAEA 60
           MVVNQTLYILVCIYFADENEALNAKELNPVEDEETLNKDEAGVAEEEGVLE+D  VEAEA
Sbjct: 1   MVVNQTLYILVCIYFADENEALNAKELNPVEDEETLNKDEAGVAEEEGVLEKDALVEAEA 60

Query: 61  REKENGEKVEEVEEVEEEKEKEPKPKEEEGLEVGLGNGEEEEVGF-EEEEEEEEDERDKG 120
           REKENGEK   VEEVEEEKEKEPKPKEEEGLEVGLGNGE+EEVGF EEEEEEEEDERDKG
Sbjct: 61  REKENGEK---VEEVEEEKEKEPKPKEEEGLEVGLGNGEDEEVGFEEEEEEEEEDERDKG 120

Query: 121 KGDDPKEKVVDPKEKPIEEIKM 142
           KGDDPKEKV DPK KP   I M
Sbjct: 121 KGDDPKEKVEDPKPKPDISIDM 139

[Close]

BLAST of CSPI06G08390 vs. NCBI nr
Match: gi|778722074|ref|XP_011658400.1| (PREDICTED: major centromere autoantigen B [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 4.3e-49
Identity = 128/142 (90.14%), Postives = 130/142 (91.55%), Query Frame = 1


Query: 1   MVVNQTLYILVCIYFADENEALNAKELNPVEDEETLNKDEAGVAEEEGVLEEDVPVEAEA 60
           MVVNQTLYILVCIYFADENEALNAKELNPVEDEETLNKDEAGVAEEEGVLE+D  VEAEA
Sbjct: 1   MVVNQTLYILVCIYFADENEALNAKELNPVEDEETLNKDEAGVAEEEGVLEKDALVEAEA 60

Query: 61  REKENGEKVEEVEEVEEEKEKEPKPKEEEGLEVGLGNGEEEEVGF-EEEEEEEEDERDKG 120
           REKENGEK   VEEVEEEKEKEPKPKEEEGLEVGLGNGE+EEVGF EEEEEEEEDERDKG
Sbjct: 61  REKENGEK---VEEVEEEKEKEPKPKEEEGLEVGLGNGEDEEVGFEEEEEEEEEDERDKG 120

Query: 121 KGDDPKEKVVDPKEKPIEEIKM 142
           KGDDPKEKV DPK KP   I M
Sbjct: 121 KGDDPKEKVEDPKPKPDISIDM 139

The following BLAST results are available for this feature:

BLAST of CSPI06G08390 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G08390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDT9_CUCSA	3.0e-49	90.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106740 PE=4 SV=1	[more]

BLAST of CSPI06G08390 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G08390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722074\|ref\|XP_011658400.1\|	4.3e-49	90.14	PREDICTED: major centromere autoantigen B [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G08390.1	CSPI06G08390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 58..81 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G08390	Csa6G106740	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G08390	CsGy6G008480	Cucumber (Gy14) v2	cgybcpiB288

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G08390	Cucurbita moschata (Rifu)	cmocpiB911
CSPI06G08390	Watermelon (Charleston Gray)	cpiwcgB503
CSPI06G08390	Watermelon (97103) v1	cpiwmB563
CSPI06G08390	Cucurbita pepo (Zucchini)	cpecpiB154
CSPI06G08390	Cucurbita pepo (Zucchini)	cpecpiB332
CSPI06G08390	Bottle gourd (USVL1VR-Ls)	cpilsiB401
CSPI06G08390	Bottle gourd (USVL1VR-Ls)	cpilsiB404
CSPI06G08390	Silver-seed gourd	carcpiB0097
CSPI06G08390	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G08390	Watermelon (97103) v2	cpiwmbB495
CSPI06G08390	Wax gourd	cpiwgoB539
CSPI06G08390	Cucumber (Gy14) v1	cgycpiB156
CSPI06G08390	Cucurbita maxima (Rimu)	cmacpiB932