CSPI06G05690 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G05690
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrotransposon protein, putative, unclassified
Location	Chr6 : 5112228 .. 5113100 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTATTTCAACAGGTTGATTCTACATGTTCAACAACAAGGTAAAATTAAAGGAGTCTGCTTCAGTAATGAATGCAACCTCACACATCTTCTCTTTGACGATGATATTCTTTTATTTGTTGAAGATAATGATGAATATATAACAAATTTTAGGAATATCATCTTTTTATTTGAAGCGGCATCTCGTCTGAATTTCAATCTATCAAAGTCCACCATATCTCCCATAAATGTCGACAACTGCAGAACTGATGTTGTGTGTAATCTTTGGGGCCTAAAATAATAGTATCTTCCAATTCCTCACCTTGGAGTTCCGTTAGGAGGAAAGCCATCTTCAGCATCATTTTGGGAGAATATCACAGCAAAAATTCATAAGAAATTGAACAACCGGAAATTCTCTTATATCTCAAAAGGGGGGAAAATGACTCTCATTAAATCCACTCTAATCAGTTTGCCCACATATCAACTATCGATATTTAAAGCTCCAGTTGGCATCTGTAAAAAAATTGAAAAATATTGGAGAGATTTCTTATGGAAGAACAAAAATGAAGACAAGCTTACCCACCTCCTTAGATGGTCCAAAGTCACTCTTCCTATTGAAAAAGGTGGTCTTGGTATACATAAAATAACAGATACCAACTTTTCCTTCTTATGCAAATGGCTCTGGAGATTCCATACTGAAGCATATCCCCTCTGGAAAAAAATTATTACTGCTAAATATAATAAGTCCTTCATTGGAGAGCTGCCTGCATATGGAAAATATAGTTCTTCGAAAGCTCCTTGGAGAAATATTATCAAAGGTGTCGAATGCTCAGATCAAATGGACGGTAAACAATGGCGAAAATCTCTCCTTTTGGAAATGAATTTGGTATGA

mRNA sequence

ATGGATTATTTCAACAGGTTGATTCTACATGTTCAACAACAAGCGGCATCTCGTCTGAATTTCAATCTATCAAAGTCCACCATATCTCCCATAAATGTCGACAACTGCAGAACTGATGTTTATCTTCCAATTCCTCACCTTGGAGTTCCGTTAGGAGGAAAGCCATCTTCAGCATCATTTTGGGAGAATATCACAGCAAAAATTCATAAGAAATTGAACAACCGGAAATTCTCTTATATCTCAAAAGGGGGGAAAATGACTCTCATTAAATCCACTCTAATCAGTTTGCCCACATATCAACTATCGATATTTAAAGCTCCAGTTGGCATCTGTAAAAAAATTGAAAAATATTGGAGAGATTTCTTATGGAAGAACAAAAATGAAGACAAGCTTACCCACCTCCTTAGATGGTCCAAAGTCACTCTTCCTATTGAAAAAGGTGGTCTTGGTATACATAAAATAACAGATACCAACTTTTCCTTCTTATGCAAATGGCTCTGGAGATTCCATACTGAAGCATATCCCCTCTGGAAAAAAATTATTACTGCTAAATATAATAAGTCCTTCATTGGAGAGCTGCCTGCATATGGAAAATATAGTTCTTCGAAAGCTCCTTGGAGAAATATTATCAAAGGTGTCGAATGCTCAGATCAAATGGACGGTAAACAATGGCGAAAATCTCTCCTTTTGGAAATGAATTTGGTATGA

Coding sequence (CDS)

ATGGATTATTTCAACAGGTTGATTCTACATGTTCAACAACAAGCGGCATCTCGTCTGAATTTCAATCTATCAAAGTCCACCATATCTCCCATAAATGTCGACAACTGCAGAACTGATGTTTATCTTCCAATTCCTCACCTTGGAGTTCCGTTAGGAGGAAAGCCATCTTCAGCATCATTTTGGGAGAATATCACAGCAAAAATTCATAAGAAATTGAACAACCGGAAATTCTCTTATATCTCAAAAGGGGGGAAAATGACTCTCATTAAATCCACTCTAATCAGTTTGCCCACATATCAACTATCGATATTTAAAGCTCCAGTTGGCATCTGTAAAAAAATTGAAAAATATTGGAGAGATTTCTTATGGAAGAACAAAAATGAAGACAAGCTTACCCACCTCCTTAGATGGTCCAAAGTCACTCTTCCTATTGAAAAAGGTGGTCTTGGTATACATAAAATAACAGATACCAACTTTTCCTTCTTATGCAAATGGCTCTGGAGATTCCATACTGAAGCATATCCCCTCTGGAAAAAAATTATTACTGCTAAATATAATAAGTCCTTCATTGGAGAGCTGCCTGCATATGGAAAATATAGTTCTTCGAAAGCTCCTTGGAGAAATATTATCAAAGGTGTCGAATGCTCAGATCAAATGGACGGTAAACAATGGCGAAAATCTCTCCTTTTGGAAATGAATTTGGTATGA

Homology

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BLAST of CSPI06G05690 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.8e-16
Identity = 49/168 (29.17%), Postives = 86/168 (51.19%), Query Frame = 1


Query: 49  VPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPV 108
           +P+  K  +   +  I  ++  +++  +   +S  G++TL K+ L S+P + +S    P 
Sbjct: 1   MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60

Query: 109 GICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWR 168
            I  ++++  R FLW +  E K  HL++WSKV  P ++GGLG+      N + + K  WR
Sbjct: 61  SILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWR 120

Query: 169 FHTEAYPLWKKIITAKYNKSFIGE---LPAYGKYSSSKAPWRNIIKGV 214
              E   LW  ++  KY+   I +   L   G +SS+   WR+I  G+
Sbjct: 121 LLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGSWSST---WRSIAIGL 165

[Close]

BLAST of CSPI06G05690 vs. TrEMBL
Match: A5C1E7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021632 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-36
Identity = 85/208 (40.87%), Postives = 115/208 (55.29%), Query Frame = 1


Query: 14   QAASRLNFNLSKSTISPIN-VDN---------CRTDVYLPIPHLGVPLGGKPSSASFWEN 73
            +AAS L  NL KS + P+  VD          CR    LP  +LG+PLG      S W+ 
Sbjct: 1814 EAASGLKINLDKSMVIPVGEVDGVLDMAAEIGCRVG-QLPTVYLGLPLGAPNRDVSAWDG 1873

Query: 74   ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
            +     + L+  K  Y+SKGGK+TLIKST+ S P YQ+S+F+ P  + ++IEK  RDFLW
Sbjct: 1874 VEEXTRRXLSLWKRQYLSKGGKLTLIKSTMSSFPLYQMSVFRMPKSVARRIEKLQRDFLW 1933

Query: 134  KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 193
               N    +HL++W  V +  EKGGLG+ KIT  N +FL KW+WRF      LWKK++ A
Sbjct: 1934 GGANGGTKSHLVKWEAVCVEKEKGGLGLRKITILNKAFLGKWIWRFACAKEELWKKVLEA 1993

Query: 194  KYNKSFIGELPAYGKYSSSKAPWRNIIK 212
            KY K   G        +     W+ I+K
Sbjct: 1994 KYGKEEFGWRTRKANGAFGVGVWKEILK 2020

[Close]

BLAST of CSPI06G05690 vs. TrEMBL
Match: A5BXL2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023185 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.9e-36
Identity = 86/208 (41.35%), Postives = 119/208 (57.21%), Query Frame = 1


Query: 14  QAASRLNFNLSKSTISPIN-VDN---------CRTDVYLPIPHLGVPLGGKPSSASFWEN 73
           +AAS L  NL+KS I PI  V++         CR    LP  +LG+PLG    + S W+ 
Sbjct: 595 EAASGLRINLAKSEIIPIGEVEDSLELAAELGCRVGS-LPSHYLGLPLGVPNRATSMWDG 654

Query: 74  ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
           +  +I ++L   K  YISKGG++TLIKSTL SLPTYQ+SIF+ P  + K++EK  RDFLW
Sbjct: 655 VEERIRRRLALWKRQYISKGGRITLIKSTLASLPTYQMSIFRMPKXVAKRVEKTQRDFLW 714

Query: 134 KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 193
              N +   HL++W  V     KGGLG+ +I   N + L KW+WRF  E    W ++IT 
Sbjct: 715 GGGNLEGKVHLVKWDAVCTEKHKGGLGLRRIATLNRALLGKWIWRFACEKNNFWNQVITT 774

Query: 194 KYNKSFIGELPAYGKYSSSKAPWRNIIK 212
           KY +   G  P   +  +    W+ I+K
Sbjct: 775 KYGQEDYGWRPKKVRGPAGVGVWKEIMK 801

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BLAST of CSPI06G05690 vs. TrEMBL
Match: A5AY60_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000485 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.2e-36
Identity = 89/215 (41.40%), Postives = 123/215 (57.21%), Query Frame = 1


Query: 6   RLILHVQQQAASRLNFNLSKSTISPIN-----------VDNCRTDVYLPIPHLGVPLGGK 65
           ++IL V  Q +S L  NL KSTIS IN           V +CR   + P+ +LG+PLGG 
Sbjct: 648 KIILLVFGQVSS-LKINLEKSTISGINTKQELLSSLASVFDCRVSEW-PLSYLGLPLGGN 707

Query: 66  PSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKI 125
           P +  FW+ +  +I ++L+  K +Y+S GG++TLI+S L  +P+Y +S+FK P  I  KI
Sbjct: 708 PKTIGFWDLVVERISRRLDGWKKTYLSLGGRITLIQSCLSHIPSYFISLFKIPASIASKI 767

Query: 126 EKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAY 185
           EK  R+FLW    E+K  HL+RW  V+ P E GGLG  KI+  N + L KWLWRF  E  
Sbjct: 768 EKMQRNFLWSGAGEEKKDHLVRWEVVSRPKELGGLGFGKISLRNIALLGKWLWRFPRERS 827

Query: 186 PLWKKIITAKYNKSFIGELPAYGKYSSSKAPWRNI 210
            LW K+I + Y     G         S + PW+ I
Sbjct: 828 GLWHKVIVSIYGTHPNGWDANMVVRWSHRCPWKAI 860

[Close]

BLAST of CSPI06G05690 vs. TrEMBL
Match: A5B978_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037520 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.2e-36
Identity = 91/215 (42.33%), Postives = 120/215 (55.81%), Query Frame = 1


Query: 6    RLILHVQQQAASRLNFNLSKSTISPIN-----------VDNCRTDVYLPIPHLGVPLGGK 65
            ++IL V  Q  S L  NL KSTIS IN           V  CR   + P+ +LG+PLGG 
Sbjct: 1405 KIILLVFGQV-SGLKINLEKSTISGINTRQEMLSSLALVLECRVSEW-PLSYLGLPLGGN 1464

Query: 66   PSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKI 125
            P +  FW+ +  +I ++L+  K +Y+S GG++TLI+S L  +P+Y LS+FK PV I  KI
Sbjct: 1465 PKTIGFWDPVVERISRRLDGWKKAYLSLGGRITLIQSCLSHIPSYFLSLFKIPVSIASKI 1524

Query: 126  EKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAY 185
            EK  RDFLW    E K  HL+RW  V+ P E GGLG  K +  N + L KWLWRF  E  
Sbjct: 1525 EKMQRDFLWSGAGEGKRDHLIRWEVVSRPREMGGLGFGKTSMRNSALLGKWLWRFPRERS 1584

Query: 186  PLWKKIITAKYNKSFIGELPAYGKYSSSKAPWRNI 210
             LW K+I + Y     G         S + PW+ I
Sbjct: 1585 GLWHKVIASIYGTHPNGWDANMVVRWSHRCPWKAI 1617

[Close]

BLAST of CSPI06G05690 vs. TrEMBL
Match: A5AFR7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002943 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.2e-36
Identity = 91/215 (42.33%), Postives = 120/215 (55.81%), Query Frame = 1


Query: 6   RLILHVQQQAASRLNFNLSKSTISPIN-----------VDNCRTDVYLPIPHLGVPLGGK 65
           ++IL V  Q  S L  NL KSTIS IN           V  CR   + P+ +LG+PLGG 
Sbjct: 556 KIILLVFGQV-SGLKINLEKSTISGINTRQEMLSSLALVLECRVSEW-PLSYLGLPLGGN 615

Query: 66  PSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKI 125
           P +  FW+ +  +I ++L+  K +Y+S GG++TLI+S L  +P+Y LS+FK PV I  KI
Sbjct: 616 PKTIGFWDPVVERISRRLDGWKKAYLSLGGRITLIQSCLSHIPSYFLSLFKIPVSIASKI 675

Query: 126 EKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAY 185
           EK  RDFLW    E K  HL+RW  V+ P E GGLG  K +  N + L KWLWRF  E  
Sbjct: 676 EKMQRDFLWSGAGEGKRDHLIRWEVVSRPREMGGLGFGKTSMRNSALLGKWLWRFPRERS 735

Query: 186 PLWKKIITAKYNKSFIGELPAYGKYSSSKAPWRNI 210
            LW K+I + Y     G         S + PW+ I
Sbjct: 736 GLWHKVIASIYGTHPNGWDANMVVRWSHRCPWKAI 768

[Close]

BLAST of CSPI06G05690 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-12
Identity = 38/136 (27.94%), Postives = 65/136 (47.79%), Query Frame = 1


Query: 42  LPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQL 101
           LP+ +LG+PL  K  + S +  +  KI  ++      ++S  G++ LI S + SL  + +
Sbjct: 23  LPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWM 82

Query: 102 SIFKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTN--- 161
           S F+ P    K+I+     FLW     +     + WS V  P ++GGLGI  + + N   
Sbjct: 83  SAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGS 142

Query: 162 ------FSFLCKWLWR 169
                  + L  W+W+
Sbjct: 143 FWSISGNTTLGSWMWK 158

[Close]

BLAST of CSPI06G05690 vs. TAIR10
Match: AT4G29090.1 (AT4G29090.1 Ribonuclease H-like superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10
Identity = 30/92 (32.61%), Postives = 47/92 (51.09%), Query Frame = 1


Query: 94  ISLPTYQLSIFKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHK 153
           ++LPTY ++ F  P  +CK+I     DF W+NK E K  H   W  ++    +GG+G   
Sbjct: 1   MALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKD 60

Query: 154 ITDTNFSFLCKWLWRFHTEAYPLWKKIITAKY 186
           I   N + L K +WR  +    L  K+  ++Y
Sbjct: 61  IEAFNLALLGKQMWRMLSRPESLMAKVFKSRY 92

[Close]

BLAST of CSPI06G05690 vs. NCBI nr
Match: gi|659130833|ref|XP_008465376.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 226.5 bits (576), Expect = 4.9e-56
Identity = 112/208 (53.85%), Postives = 137/208 (65.87%), Query Frame = 1


Query: 14  QAASRLNFNLSKSTISPINVDNCRTDV----------YLPIPHLGVPLGGKPSSASFWEN 73
           + AS L FN SKSTISPIN+   RTD           +LP  +LGVPLGG P S SFW  
Sbjct: 166 EKASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQ 225

Query: 74  ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
               IHKKLN  K+S ISK G++TL+K++L SLPTYQLS FKAPV + K+IEK+WRDFLW
Sbjct: 226 TIECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLW 285

Query: 134 KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 193
               + +  HL+ W   T P E GGLGI K+ DTN + LCKWLWR+H E+  LWKK I A
Sbjct: 286 GGSEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDA 345

Query: 194 KYNKSFIGELPAYGKYSSSKAPWRNIIK 212
           KY K+  G++P  G+  S K+PW  I K
Sbjct: 346 KYTKNHQGDIPIVGRNCSVKSPWNAIKK 373

[Close]

BLAST of CSPI06G05690 vs. NCBI nr
Match: gi|659093714|ref|XP_008447678.1| (PREDICTED: uncharacterized protein LOC103490087 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 3.1e-50
Identity = 104/214 (48.60%), Postives = 138/214 (64.49%), Query Frame = 1


Query: 14  QAASRLNFNLSKSTISPINVD-------------NCRTDVYLPIPHLGVPLGGKPSSASF 73
           + AS L  NLSKS + P+NV              +C T   LP+ +LGVPLGG P S  F
Sbjct: 59  EKASGLKINLSKSVMVPVNVPWPRALECASSWEISCHT---LPLTYLGVPLGGNPKSKLF 118

Query: 74  WENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRD 133
           W NI  +I KKL+N K+++ISKGG++TLIKSTL SLP YQLS+F+AP    K IEK WR+
Sbjct: 119 WRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRN 178

Query: 134 FLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKI 193
           FLWK     K +HL+ W+ VT P E+G LGI K+  TN + L KWLWR+++E   LW+++
Sbjct: 179 FLWKGSCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRL 238

Query: 194 ITAKYNKSFIGELPAYGKYSSSKAPWRNIIKGVE 215
           I  KY     G++P+    SS KAPWR+II  ++
Sbjct: 239 IHIKYQGKHPGDIPSNISSSSPKAPWRSIINNID 269

[Close]

BLAST of CSPI06G05690 vs. NCBI nr
Match: gi|659096604|ref|XP_008449185.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 7.1e-47
Identity = 98/181 (54.14%), Postives = 125/181 (69.06%), Query Frame = 1


Query: 14  QAASRLNFNLSKSTISPINVDNCRTDVY----------LPIPHLGVPLGGKPSSASFWEN 73
           ++AS LN NL+KSTI PINV   R ++           LP  +LG+PLGG  SS +FW+N
Sbjct: 85  ESASGLNINLNKSTIFPINVPVNRANIIVESWGLRKDILPTSYLGMPLGGNLSSLNFWDN 144

Query: 74  ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
           I  KI KKL++ K+S +SKGG++TLI STL SLPTYQLS+FKA  GI +KIE  WR+FLW
Sbjct: 145 ILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQLSVFKALKGIARKIEASWRNFLW 204

Query: 134 KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 185
           K  +      L+RW+K+  P EKGGLGIH +  TN + LCKWLW+F TE  PL K++I A
Sbjct: 205 KGTSNGHNISLIRWAKIITPKEKGGLGIHSVHSTNSTLLCKWLWKFLTEKDPLRKRLIIA 264

[Close]

BLAST of CSPI06G05690 vs. NCBI nr
Match: gi|659086627|ref|XP_008444035.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 1.3e-37
Identity = 77/147 (52.38%), Postives = 105/147 (71.43%), Query Frame = 1


Query: 67  KIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLWKNK 126
           KI KKLNN K++ ISKGG++TLIKSTL +LP YQLS+F+AP   CK IEK WR FLWK  
Sbjct: 33  KIQKKLNNWKYAQISKGGRLTLIKSTLSNLPIYQLSVFQAPSLTCKNIEKSWRKFLWKGN 92

Query: 127 NEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYN 186
           N  + +HL+ W+KV+   E+GGLGI ++  TN + L KWLWR+ +E   LW+ +I  KY 
Sbjct: 93  NGIEGSHLINWTKVSKSKEEGGLGISRLHVTNKALLTKWLWRYLSEPNALWRSLIQCKYK 152

Query: 187 KSFIGELPAYGKYSSSKAPWRNIIKGV 214
            ++ G++P+    S+SKAPWR+II  +
Sbjct: 153 GNYPGDIPSNISSSTSKAPWRSIIDNI 179

[Close]

BLAST of CSPI06G05690 vs. NCBI nr
Match: gi|147835484|emb|CAN77480.1| (hypothetical protein VITISV_021632 [Vitis vinifera])

HSP 1 Score: 161.4 bits (407), Expect = 1.9e-36
Identity = 85/208 (40.87%), Postives = 115/208 (55.29%), Query Frame = 1


Query: 14   QAASRLNFNLSKSTISPIN-VDN---------CRTDVYLPIPHLGVPLGGKPSSASFWEN 73
            +AAS L  NL KS + P+  VD          CR    LP  +LG+PLG      S W+ 
Sbjct: 1814 EAASGLKINLDKSMVIPVGEVDGVLDMAAEIGCRVG-QLPTVYLGLPLGAPNRDVSAWDG 1873

Query: 74   ITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLW 133
            +     + L+  K  Y+SKGGK+TLIKST+ S P YQ+S+F+ P  + ++IEK  RDFLW
Sbjct: 1874 VEEXTRRXLSLWKRQYLSKGGKLTLIKSTMSSFPLYQMSVFRMPKSVARRIEKLQRDFLW 1933

Query: 134  KNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITA 193
               N    +HL++W  V +  EKGGLG+ KIT  N +FL KW+WRF      LWKK++ A
Sbjct: 1934 GGANGGTKSHLVKWEAVCVEKEKGGLGLRKITILNKAFLGKWIWRFACAKEELWKKVLEA 1993

Query: 194  KYNKSFIGELPAYGKYSSSKAPWRNIIK 212
            KY K   G        +     W+ I+K
Sbjct: 1994 KYGKEEFGWRTRKANGAFGVGVWKEILK 2020

The following BLAST results are available for this feature:

BLAST of CSPI06G05690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNHX1_ARATH	3.8e-16	29.17	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P...	[more]

BLAST of CSPI06G05690 vs. TrEMBL


Match Name	E-value	Identity	Description
A5C1E7_VITVI	1.4e-36	40.87	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021632 PE=4 SV=1	[more]
A5BXL2_VITVI	3.9e-36	41.35	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023185 PE=4 SV=1	[more]
A5AY60_VITVI	5.2e-36	41.40	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000485 PE=4 SV=1	[more]
A5B978_VITVI	5.2e-36	42.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037520 PE=4 SV=1	[more]
A5AFR7_VITVI	5.2e-36	42.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002943 PE=4 SV=1	[more]

BLAST of CSPI06G05690 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24255.1	2.1e-12	27.94	RNA-directed DNA polymerase (reverse transcriptase)-related family p...	[more]
AT4G29090.1	1.1e-10	32.61	Ribonuclease H-like superfamily protein	[more]

BLAST of CSPI06G05690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130833\|ref\|XP_008465376.1\|	4.9e-56	53.85	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659093714\|ref\|XP_008447678.1\|	3.1e-50	48.60	PREDICTED: uncharacterized protein LOC103490087 [Cucumis melo]	[more]
gi\|659096604\|ref\|XP_008449185.1\|	7.1e-47	54.14	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659086627\|ref\|XP_008444035.1\|	1.3e-37	52.38	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|147835484\|emb\|CAN77480.1\|	1.9e-36	40.87	hypothetical protein VITISV_021632 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G05690.1	CSPI06G05690.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G05690	Cucsa.362980	Cucumber (Gy14) v1	cgycpiB540

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G05690	Cucurbita moschata (Rifu)	cmocpiB263
CSPI06G05690	Cucurbita moschata (Rifu)	cmocpiB362
CSPI06G05690	Cucurbita moschata (Rifu)	cmocpiB343
CSPI06G05690	Cucurbita moschata (Rifu)	cmocpiB839
CSPI06G05690	Cucurbita moschata (Rifu)	cmocpiB893
CSPI06G05690	Cucumber (Chinese Long) v2	cpicuB283
CSPI06G05690	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G05690	Melon (DHL92) v3.5.1	cpimeB433
CSPI06G05690	Melon (DHL92) v3.5.1	cpimeB496
CSPI06G05690	Watermelon (Charleston Gray)	cpiwcgB494
CSPI06G05690	Watermelon (Charleston Gray)	cpiwcgB503
CSPI06G05690	Watermelon (97103) v1	cpiwmB508
CSPI06G05690	Watermelon (97103) v1	cpiwmB517
CSPI06G05690	Watermelon (97103) v1	cpiwmB556
CSPI06G05690	Cucurbita pepo (Zucchini)	cpecpiB145
CSPI06G05690	Cucurbita pepo (Zucchini)	cpecpiB324
CSPI06G05690	Cucurbita pepo (Zucchini)	cpecpiB633
CSPI06G05690	Cucurbita pepo (Zucchini)	cpecpiB879
CSPI06G05690	Bottle gourd (USVL1VR-Ls)	cpilsiB404
CSPI06G05690	Bottle gourd (USVL1VR-Ls)	cpilsiB470
CSPI06G05690	Bottle gourd (USVL1VR-Ls)	cpilsiB469
CSPI06G05690	Melon (DHL92) v3.6.1	cpimedB431
CSPI06G05690	Melon (DHL92) v3.6.1	cpimedB483
CSPI06G05690	Melon (DHL92) v3.6.1	cpimedB488
CSPI06G05690	Cucumber (Gy14) v2	cgybcpiB141
CSPI06G05690	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G05690	Silver-seed gourd	carcpiB0263
CSPI06G05690	Silver-seed gourd	carcpiB0653
CSPI06G05690	Silver-seed gourd	carcpiB1118
CSPI06G05690	Cucumber (Chinese Long) v3	cpicucB335
CSPI06G05690	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G05690	Watermelon (97103) v2	cpiwmbB485
CSPI06G05690	Watermelon (97103) v2	cpiwmbB491
CSPI06G05690	Watermelon (97103) v2	cpiwmbB495
CSPI06G05690	Wax gourd	cpiwgoB559
CSPI06G05690	Wild cucumber (PI 183967)	cpicpiB126
CSPI06G05690	Wild cucumber (PI 183967)	cpicpiB139
CSPI06G05690	Cucumber (Gy14) v1	cgycpiB391
CSPI06G05690	Cucumber (Gy14) v1	cgycpiB393
CSPI06G05690	Cucurbita maxima (Rimu)	cmacpiB273
CSPI06G05690	Cucurbita maxima (Rimu)	cmacpiB350
CSPI06G05690	Cucurbita maxima (Rimu)	cmacpiB373
CSPI06G05690	Cucurbita maxima (Rimu)	cmacpiB856
CSPI06G05690	Cucurbita maxima (Rimu)	cmacpiB915