CSPI06G05600 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G05600
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 5066423 .. 5066802 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGACAGATCGAGAATGACTATGATATGGAGGCAATGAAGCAATGGGACATTCAAACAAAATTACGTTTTGATTCCAATAACCTCCATAGAATGCGAGTTAATTTTGAACCATTGACAGTTAAACGCAAACAACAATATCGCGATACCAGATTAGTGCACAAAGTTCATGAAGGTAATAGTTTGTTCAAATTCAGAAAACAAACAATCTTTTAAGGATAAACACGGATAGAGCAATTAAAGTTTGTAAGGTGCGAAAAAAAGATAAAAACACGATTGAGTGCGATATTTATTCTGATTTCGGACCTCCGCGGAAACGAAAGCCATTGAAATTTTGTGTTCCGGGATCACAGTTTAGTTGCTCAGGATCTGACTAA

mRNA sequence

ATGAAGGGACAGATCGAGAATGACTATGATATGGAGGCAATGAAGCAATGGGACATTCAAACAAAATTACGTTTTGATTCCAATAACCTCCATAGAATGCGAGTTAATTTTGAACCATTGACAGTTAAACGCAAACAACAATATCGCGATACCAGATTAGTGCACAAAGTTCATGAAGATAAAAACACGATTGAGTGCGATATTTATTCTGATTTCGGACCTCCGCGGAAACGAAAGCCATTGAAATTTTGTGTTCCGGGATCACAGTTTAGTTGCTCAGGATCTGACTAA

Coding sequence (CDS)

ATGAAGGGACAGATCGAGAATGACTATGATATGGAGGCAATGAAGCAATGGGACATTCAAACAAAATTACGTTTTGATTCCAATAACCTCCATAGAATGCGAGTTAATTTTGAACCATTGACAGTTAAACGCAAACAACAATATCGCGATACCAGATTAGTGCACAAAGTTCATGAAGATAAAAACACGATTGAGTGCGATATTTATTCTGATTTCGGACCTCCGCGGAAACGAAAGCCATTGAAATTTTGTGTTCCGGGATCACAGTTTAGTTGCTCAGGATCTGACTAA
Homology
[Close]
BLAST of CSPI06G05600 vs. TrEMBL
Match: A0A0A0K9P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G075140 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 6.4e-49
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 1 

Query: 1  MKGQIENDYDMEAMKQWDIQTKLRFDSNNLHRMRVNFEPLTVKRKQQYRDTRLVHKVHED 60
          MKGQIENDYDMEAMKQWDIQTKL FDSNNLHRMRVNFEPLTVKRKQQYRDT LVHKVHED
Sbjct: 1  MKGQIENDYDMEAMKQWDIQTKLCFDSNNLHRMRVNFEPLTVKRKQQYRDTGLVHKVHED 60

Query: 61 KNTIECDIYSDFGPPRKRKPLKFCVPGSQFSCSGSD 97
          KNTIECDIYSDFGPPRKRKPLKFCVPGSQFSCSGSD
Sbjct: 61 KNTIECDIYSDFGPPRKRKPLKFCVPGSQFSCSGSD 96

[Close]
BLAST of CSPI06G05600 vs. NCBI nr
Match: gi|700191009|gb|KGN46213.1| (hypothetical protein Csa_6G075140 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 9.1e-49
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 1 

Query: 1  MKGQIENDYDMEAMKQWDIQTKLRFDSNNLHRMRVNFEPLTVKRKQQYRDTRLVHKVHED 60
          MKGQIENDYDMEAMKQWDIQTKL FDSNNLHRMRVNFEPLTVKRKQQYRDT LVHKVHED
Sbjct: 1  MKGQIENDYDMEAMKQWDIQTKLCFDSNNLHRMRVNFEPLTVKRKQQYRDTGLVHKVHED 60

Query: 61 KNTIECDIYSDFGPPRKRKPLKFCVPGSQFSCSGSD 97
          KNTIECDIYSDFGPPRKRKPLKFCVPGSQFSCSGSD
Sbjct: 61 KNTIECDIYSDFGPPRKRKPLKFCVPGSQFSCSGSD 96

The following BLAST results are available for this feature:
BLAST of CSPI06G05600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G05600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9P8_CUCSA6.4e-4997.92Uncharacterized protein OS=Cucumis sativus GN=Csa_6G075140 PE=4 SV=1[more]
BLAST of CSPI06G05600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G05600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191009|gb|KGN46213.1|9.1e-4997.92hypothetical protein Csa_6G075140 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G05600.1CSPI06G05600.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G05600Csa6G075140Cucumber (Chinese Long) v2cpicuB314
CSPI06G05600CsaV3_6G005920Cucumber (Chinese Long) v3cpicucB364
CSPI06G05600CsGy6G005540Cucumber (Gy14) v2cgybcpiB288
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G05600Wax gourdcpiwgoB657
CSPI06G05600Wild cucumber (PI 183967)cpicpiB126
CSPI06G05600Wild cucumber (PI 183967)cpicpiB139
CSPI06G05600Cucumber (Gy14) v1cgycpiB391
CSPI06G05600Cucumber (Gy14) v1cgycpiB393
CSPI06G05600Cucumber (Gy14) v1cgycpiB540
CSPI06G05600Cucurbita maxima (Rimu)cmacpiB273
CSPI06G05600Cucurbita maxima (Rimu)cmacpiB350
CSPI06G05600Cucurbita maxima (Rimu)cmacpiB373
CSPI06G05600Cucurbita maxima (Rimu)cmacpiB386
CSPI06G05600Cucurbita maxima (Rimu)cmacpiB856
CSPI06G05600Cucurbita maxima (Rimu)cmacpiB915
CSPI06G05600Cucurbita moschata (Rifu)cmocpiB263
CSPI06G05600Cucurbita moschata (Rifu)cmocpiB362
CSPI06G05600Cucurbita moschata (Rifu)cmocpiB343
CSPI06G05600Cucurbita moschata (Rifu)cmocpiB375
CSPI06G05600Cucurbita moschata (Rifu)cmocpiB839
CSPI06G05600Cucurbita moschata (Rifu)cmocpiB893
CSPI06G05600Cucumber (Chinese Long) v2cpicuB283
CSPI06G05600Melon (DHL92) v3.5.1cpimeB433
CSPI06G05600Melon (DHL92) v3.5.1cpimeB496
CSPI06G05600Watermelon (Charleston Gray)cpiwcgB494
CSPI06G05600Watermelon (Charleston Gray)cpiwcgB503
CSPI06G05600Watermelon (97103) v1cpiwmB508
CSPI06G05600Watermelon (97103) v1cpiwmB517
CSPI06G05600Watermelon (97103) v1cpiwmB556
CSPI06G05600Cucurbita pepo (Zucchini)cpecpiB145
CSPI06G05600Cucurbita pepo (Zucchini)cpecpiB157
CSPI06G05600Cucurbita pepo (Zucchini)cpecpiB324
CSPI06G05600Cucurbita pepo (Zucchini)cpecpiB633
CSPI06G05600Cucurbita pepo (Zucchini)cpecpiB879
CSPI06G05600Bottle gourd (USVL1VR-Ls)cpilsiB404
CSPI06G05600Bottle gourd (USVL1VR-Ls)cpilsiB470
CSPI06G05600Bottle gourd (USVL1VR-Ls)cpilsiB469
CSPI06G05600Melon (DHL92) v3.6.1cpimedB431
CSPI06G05600Melon (DHL92) v3.6.1cpimedB483
CSPI06G05600Melon (DHL92) v3.6.1cpimedB488
CSPI06G05600Cucumber (Gy14) v2cgybcpiB141
CSPI06G05600Silver-seed gourdcarcpiB0262
CSPI06G05600Silver-seed gourdcarcpiB0263
CSPI06G05600Silver-seed gourdcarcpiB0653
CSPI06G05600Silver-seed gourdcarcpiB1118
CSPI06G05600Cucumber (Chinese Long) v3cpicucB335
CSPI06G05600Watermelon (97103) v2cpiwmbB485
CSPI06G05600Watermelon (97103) v2cpiwmbB491
CSPI06G05600Watermelon (97103) v2cpiwmbB495