CSPI06G05220 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G05220
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 4770526 .. 4770812 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGCGATTGGCCGCCTTGTTTGAGCGAGAAGAGAGAGTGAGTGTTAGATACGTGGCAGAATATGACTCGGTCTTGGGAGGTGGGGCCAACTCACACGTACCCTGTTTTAACGGGAACCGTCAAGTAGAGGTTACGGAGTTTAGGTTTCACGTCGTCGCTGGCTTGAACTGTTTCTTGGATGACGCCGTTGGGGGAGGGGGTTTACGAAGGATGTTAGTTGTCGTTTTGTGATGTGTTACGTGGAAATTATATGCATAGGGACCCACGTGGGTGTGGTTGTGCTGGC

mRNA sequence

AAGCGATTGGCCGCCTTGTTTGAGCGAGAAGAGAGAGTGAGTGTTAGATACGTGGCAGAATATGACTCGGTCTTGGGAGGTGGGGCCAACTCACACGTACCCTGTTTTAACGGGAACCGTCAAGTAGAGGTTACGGAGTTTAGGTTTCACGTCGTCGCTGGCTTGAACTGTTTCTTGGATGACGCCGTTGGGGGAGGGGGTTTACGAAGGATGTTAGTTGTCGTTTTGTGA

Coding sequence (CDS)

AAGCGATTGGCCGCCTTGTTTGAGCGAGAAGAGAGAGTGAGTGTTAGATACGTGGCAGAATATGACTCGGTCTTGGGAGGTGGGGCCAACTCACACGTACCCTGTTTTAACGGGAACCGTCAAGTAGAGGTTACGGAGTTTAGGTTTCACGTCGTCGCTGGCTTGAACTGTTTCTTGGATGACGCCGTTGGGGGAGGGGGTTTACGAAGGATGTTAGTTGTCGTTTTGTGA
Homology
[Close]
BLAST of CSPI06G05220 vs. TrEMBL
Match: A0A0A0KBE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G062330 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.4e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1 

Query: 1   KRLAALFEREERVSVRYVAEYDSVLGGGANSHVPCFNGNRQVEVTEFRFHVVAGLNCFLD 60
           KRLAALFEREERVSVRYVAEYDSVLGGG NSHVPCFNGNRQVEVTEFRFHVVAGLNCFLD
Sbjct: 69  KRLAALFEREERVSVRYVAEYDSVLGGGPNSHVPCFNGNRQVEVTEFRFHVVAGLNCFLD 128

Query: 61  DAVGGGGLRRMLVVVL 77
           DAVGGGGLRRMLVVVL
Sbjct: 129 DAVGGGGLRRMLVVVL 144

[Close]
BLAST of CSPI06G05220 vs. NCBI nr
Match: gi|700190970|gb|KGN46174.1| (hypothetical protein Csa_6G062330 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 3.5e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1 

Query: 1   KRLAALFEREERVSVRYVAEYDSVLGGGANSHVPCFNGNRQVEVTEFRFHVVAGLNCFLD 60
           KRLAALFEREERVSVRYVAEYDSVLGGG NSHVPCFNGNRQVEVTEFRFHVVAGLNCFLD
Sbjct: 69  KRLAALFEREERVSVRYVAEYDSVLGGGPNSHVPCFNGNRQVEVTEFRFHVVAGLNCFLD 128

Query: 61  DAVGGGGLRRMLVVVL 77
           DAVGGGGLRRMLVVVL
Sbjct: 129 DAVGGGGLRRMLVVVL 144

The following BLAST results are available for this feature:
BLAST of CSPI06G05220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G05220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBE4_CUCSA2.4e-3598.68Uncharacterized protein OS=Cucumis sativus GN=Csa_6G062330 PE=4 SV=1[more]
BLAST of CSPI06G05220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G05220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190970|gb|KGN46174.1|3.5e-3598.68hypothetical protein Csa_6G062330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G05220.1CSPI06G05220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G05220Csa6G062330Cucumber (Chinese Long) v2cpicuB314
CSPI06G05220CsaV3_6G005550Cucumber (Chinese Long) v3cpicucB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G05220Watermelon (97103) v2cpiwmbB500
CSPI06G05220Watermelon (97103) v2cpiwmbB486
CSPI06G05220Wax gourdcpiwgoB550
CSPI06G05220Wax gourdcpiwgoB562
CSPI06G05220Wild cucumber (PI 183967)cpicpiB129
CSPI06G05220Cucumber (Gy14) v1cgycpiB394
CSPI06G05220Cucumber (Gy14) v1cgycpiB540
CSPI06G05220Cucurbita maxima (Rimu)cmacpiB275
CSPI06G05220Cucurbita maxima (Rimu)cmacpiB374
CSPI06G05220Cucurbita maxima (Rimu)cmacpiB916
CSPI06G05220Cucurbita moschata (Rifu)cmocpiB265
CSPI06G05220Cucurbita moschata (Rifu)cmocpiB363
CSPI06G05220Cucurbita moschata (Rifu)cmocpiB894
CSPI06G05220Cucumber (Chinese Long) v2cpicuB287
CSPI06G05220Melon (DHL92) v3.5.1cpimeB421
CSPI06G05220Melon (DHL92) v3.5.1cpimeB498
CSPI06G05220Watermelon (Charleston Gray)cpiwcgB496
CSPI06G05220Watermelon (Charleston Gray)cpiwcgB508
CSPI06G05220Watermelon (97103) v1cpiwmB510
CSPI06G05220Watermelon (97103) v1cpiwmB564
CSPI06G05220Cucurbita pepo (Zucchini)cpecpiB146
CSPI06G05220Cucurbita pepo (Zucchini)cpecpiB326
CSPI06G05220Cucurbita pepo (Zucchini)cpecpiB635
CSPI06G05220Bottle gourd (USVL1VR-Ls)cpilsiB398
CSPI06G05220Bottle gourd (USVL1VR-Ls)cpilsiB467
CSPI06G05220Melon (DHL92) v3.6.1cpimedB416
CSPI06G05220Melon (DHL92) v3.6.1cpimedB484
CSPI06G05220Cucumber (Gy14) v2cgybcpiB144
CSPI06G05220Cucumber (Gy14) v2cgybcpiB288
CSPI06G05220Silver-seed gourdcarcpiB0078
CSPI06G05220Silver-seed gourdcarcpiB0356
CSPI06G05220Silver-seed gourdcarcpiB0640
CSPI06G05220Cucumber (Chinese Long) v3cpicucB339