CSPI06G03340 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G03340
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 2974239 .. 2974613 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCCAAAATTTAAGAAAACTCATGGTTCAAAATCAAGTCGATATGCTTTAGATGATCAAGAATGCTTGACAATTTGGGGGCACCGGCGTGAAGATCCTCATGAGTATATAAGAAACTTCTACTCTATTTGTGCATCGTTTAATATGCCTGAAATATCGTTAGACAAACTGCATTTAGCACTATTTCCGCTCATATTACACAATGAAGCTAAACAATGGGCCAATGCTTTGGAAGAAGAAGAAGCAACAACATCGGACAACTTGATTGAAAAATTTATGAAGAAATTCTTTGAACCCATTGAGAATGCGATAAGAAGACAAGACCCGATGACCTTCGAACAGAGCAATAGCGAGAACTTGATAGACGCTTAG

mRNA sequence

ATGTATCCAAAATTTAAGAAAACTCATGGTTCAAAATCAAGTCGATATGCTTTAGATGATCAAGAATGCTTGACAATTTGGGGGCACCGGCGTGAAGATCCTCATGAGTATATAAGAAACTTCTACTCTATTTGTGCATCGTTTAATATGCCTGAAATATCGTTAGACAAACTGCATTTAGCACTATTTCCGCTCATATTACACAATGAAGCTAAACAATGGGCCAATGCTTTGGAAGAAGAAGAAGCAACAACATCGGACAACTTGATTGAAAAATTTATGAAGAAATTCTTTGAACCCATTGAGAATGCGATAAGAAGACAAGACCCGATGACCTTCGAACAGAGCAATAGCGAGAACTTGATAGACGCTTAG

Coding sequence (CDS)

ATGTATCCAAAATTTAAGAAAACTCATGGTTCAAAATCAAGTCGATATGCTTTAGATGATCAAGAATGCTTGACAATTTGGGGGCACCGGCGTGAAGATCCTCATGAGTATATAAGAAACTTCTACTCTATTTGTGCATCGTTTAATATGCCTGAAATATCGTTAGACAAACTGCATTTAGCACTATTTCCGCTCATATTACACAATGAAGCTAAACAATGGGCCAATGCTTTGGAAGAAGAAGAAGCAACAACATCGGACAACTTGATTGAAAAATTTATGAAGAAATTCTTTGAACCCATTGAGAATGCGATAAGAAGACAAGACCCGATGACCTTCGAACAGAGCAATAGCGAGAACTTGATAGACGCTTAG
Homology
[Close]
BLAST of CSPI06G03340 vs. TrEMBL
Match: A0A0A0K974_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G040620 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-31
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 50  MPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQD 109
           MP+ISLDKLHLALFPLILHNE KQWANALEEEEATTSDNLIEKFMKKFF PIENAIRRQD
Sbjct: 1   MPDISLDKLHLALFPLILHNETKQWANALEEEEATTSDNLIEKFMKKFFPPIENAIRRQD 60

Query: 110 PMTFEQSNSENLIDA 125
            MTFEQSNSENLIDA
Sbjct: 61  LMTFEQSNSENLIDA 75

[Close]
BLAST of CSPI06G03340 vs. TrEMBL
Match: U5CUI2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 1 

Query: 28  GHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSD 87
           G   EDPH ++R+F  +  SF +  +S + L L LFP  L + A+ W N L  +  T  +
Sbjct: 66  GMPTEDPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTLPPDSVTNWN 125

Query: 88  NLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA 125
           +L EKF++K+F P  NA  R + M+F+Q   E+  DA
Sbjct: 126 DLAEKFLRKYFPPTRNAKFRSEIMSFQQLEDESTSDA 162

[Close]
BLAST of CSPI06G03340 vs. TrEMBL
Match: A0A151QPD9_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_047190 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 31/96 (32.29%), Postives = 50/96 (52.08%), Query Frame = 1 

Query: 28  GHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSD 87
           GH  EDPH+ ++ F+ +C++   P++  D ++L  FP  L   AK W   L     T+ D
Sbjct: 118 GHAGEDPHKQLKEFHIVCSTMKPPDVQEDHIYLKAFPHSLEGVAKDWLYYLAPRSITSWD 177

Query: 88  NLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLID 124
           +L   F++KFF  ++    R+D     Q   E+L D
Sbjct: 178 DLKRMFLEKFFPALKTTAIRKDISRIRQLGGESLYD 213

[Close]
BLAST of CSPI06G03340 vs. TrEMBL
Match: A0A151RKW6_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_035437 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-08
Identity = 31/94 (32.98%), Postives = 49/94 (52.13%), Query Frame = 1 

Query: 28  GHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSD 87
           GH  EDPH++++ F+ +C++   P++  D ++L  FP  L   AK W   L     T+ D
Sbjct: 109 GHTGEDPHKHLKEFHIVCSTMKPPDVQEDHIYLKAFPHSLEGLAKDWLYYLASRSITSWD 168

Query: 88  NLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENL 122
           +L   F+KKFF   +    R+D     Q   E+L
Sbjct: 169 DLKRMFLKKFFPASKTTAIRKDISGIRQLGGESL 202

[Close]
BLAST of CSPI06G03340 vs. TrEMBL
Match: A0A151RKQ3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_035436 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-08
Identity = 31/94 (32.98%), Postives = 49/94 (52.13%), Query Frame = 1 

Query: 28  GHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSD 87
           GH  EDPH++++ F+ +C++   P++  D ++L  FP  L   AK W   L     T+ D
Sbjct: 53  GHTGEDPHKHLKEFHIVCSTMKPPDVQEDHIYLKAFPHSLEGLAKDWLYYLASRSITSWD 112

Query: 88  NLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENL 122
           +L   F+KKFF   +    R+D     Q   E+L
Sbjct: 113 DLKRMFLKKFFPASKTTAIRKDISGIRQLGGESL 146

[Close]
BLAST of CSPI06G03340 vs. NCBI nr
Match: gi|700190769|gb|KGN45973.1| (hypothetical protein Csa_6G040620 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.9e-31
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 50  MPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQD 109
           MP+ISLDKLHLALFPLILHNE KQWANALEEEEATTSDNLIEKFMKKFF PIENAIRRQD
Sbjct: 1   MPDISLDKLHLALFPLILHNETKQWANALEEEEATTSDNLIEKFMKKFFPPIENAIRRQD 60

Query: 110 PMTFEQSNSENLIDA 125
            MTFEQSNSENLIDA
Sbjct: 61  LMTFEQSNSENLIDA 75

[Close]
BLAST of CSPI06G03340 vs. NCBI nr
Match: gi|548830333|gb|ERM93404.1| (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-11
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 1 

Query: 28  GHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSD 87
           G   EDPH ++R+F  +  SF +  +S + L L LFP  L + A+ W N L  +  T  +
Sbjct: 66  GMPTEDPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTLPPDSVTNWN 125

Query: 88  NLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA 125
           +L EKF++K+F P  NA  R + M+F+Q   E+  DA
Sbjct: 126 DLAEKFLRKYFPPTRNAKFRSEIMSFQQLEDESTSDA 162

[Close]
BLAST of CSPI06G03340 vs. NCBI nr
Match: gi|720098591|ref|XP_010247674.1| (PREDICTED: uncharacterized protein LOC104590651 [Nelumbo nucifera])

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-11
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 1 

Query: 21  QECLTIWGHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEE 80
           Q  +   G   EDP+ +I NF  IC +F    +S D + L LFPL L ++AK W N+L+ 
Sbjct: 3   QNIVQFCGLANEDPNTHIANFLEICDTFKHNGVSDDAVRLKLFPLSLKDKAKTWLNSLQA 62

Query: 81  EEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA 125
              +T D +   F+ K+F P + A  R D  TF Q + E+L ++
Sbjct: 63  RSISTWDEMASPFLSKYFPPSKTAKMRNDITTFSQQDGESLYES 106

[Close]
BLAST of CSPI06G03340 vs. NCBI nr
Match: gi|823180668|ref|XP_012487938.1| (PREDICTED: uncharacterized protein LOC105801148 [Gossypium raimondii])

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-10
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 1 

Query: 21  QECLTIWGHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEE 80
           Q+ +   G + EDP+ ++ NF  +C +F +  +S D + L LFP  L N+AKQW N L  
Sbjct: 37  QQFVQFDGLQDEDPNTHLANFLEVCNTFKINGVSDDAIRLWLFPFSLRNKAKQWLNFLPR 96

Query: 81  EEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA 125
              TT D +IEKF+  +F   + A  R D  +F Q + E L DA
Sbjct: 97  GSITTWDQIIEKFLLMYFLSAKIAKLRNDISSFVQIDLETLYDA 140

[Close]
BLAST of CSPI06G03340 vs. NCBI nr
Match: gi|802538129|ref|XP_012067037.1| (PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas])

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-09
Identity = 34/104 (32.69%), Postives = 57/104 (54.81%), Query Frame = 1 

Query: 21  QECLTIWGHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEE 80
           Q  +  +G   EDP+ +I +F  IC +F M  ++ D + L LFP  L ++AK W N+L  
Sbjct: 82  QNSVQFYGLPNEDPNSHIASFLEICDTFKMNSVTADAIKLRLFPFTLKDKAKAWLNSLPP 141

Query: 81  EEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA 125
              TT + L + F+ K+F   + A   ++  +F Q  +E+L +A
Sbjct: 142 NSITTWEQLAQAFLSKYFPLAKTAKLIKEITSFTQHENESLYEA 185

The following BLAST results are available for this feature:
BLAST of CSPI06G03340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G03340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K974_CUCSA2.0e-3194.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G040620 PE=4 SV=1[more]
U5CUI2_AMBTC1.8e-1138.14Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=... [more]
A0A151QPD9_CAJCA1.4e-0832.29Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_047190 PE=4 SV=1[more]
A0A151RKW6_CAJCA4.1e-0832.98Uncharacterized protein OS=Cajanus cajan GN=KK1_035437 PE=4 SV=1[more]
A0A151RKQ3_CAJCA4.1e-0832.98Uncharacterized protein OS=Cajanus cajan GN=KK1_035436 PE=4 SV=1[more]
BLAST of CSPI06G03340 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G03340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190769|gb|KGN45973.1|2.9e-3194.67hypothetical protein Csa_6G040620 [Cucumis sativus][more]
gi|548830333|gb|ERM93404.1|2.6e-1138.14hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda][more]
gi|720098591|ref|XP_010247674.1|2.6e-1136.54PREDICTED: uncharacterized protein LOC104590651 [Nelumbo nucifera][more]
gi|823180668|ref|XP_012487938.1|1.3e-1038.46PREDICTED: uncharacterized protein LOC105801148 [Gossypium raimondii][more]
gi|802538129|ref|XP_012067037.1|3.1e-0932.69PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G03340.1CSPI06G03340.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G03340Csa6G040620Cucumber (Chinese Long) v2cpicuB314
CSPI06G03340CsaV3_6G003640Cucumber (Chinese Long) v3cpicucB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G03340Cucurbita maxima (Rimu)cmacpiB322
CSPI06G03340Cucurbita moschata (Rifu)cmocpiB313
CSPI06G03340Melon (DHL92) v3.5.1cpimeB475
CSPI06G03340Watermelon (Charleston Gray)cpiwcgB524
CSPI06G03340Watermelon (97103) v1cpiwmB474
CSPI06G03340Cucurbita pepo (Zucchini)cpecpiB197
CSPI06G03340Bottle gourd (USVL1VR-Ls)cpilsiB480
CSPI06G03340Melon (DHL92) v3.6.1cpimedB464
CSPI06G03340Cucumber (Gy14) v2cgybcpiB288
CSPI06G03340Silver-seed gourdcarcpiB0869
CSPI06G03340Watermelon (97103) v2cpiwmbB517
CSPI06G03340Wax gourdcpiwgoB581
CSPI06G03340Cucumber (Gy14) v1cgycpiB540