CSPI06G02830 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G02830
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Tic22-like family protein
Location	Chr6 : 2262634 .. 2263795 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGATTCTTGTTGAGTCTCCGTTATAAAGAAAACGCAGGTGGGGCGTTGAGTGAGTTTGTTGAAATCCTACTCTTACCTTTGTCTCTCTCTCTCTCTCTCTCTATCTCTCTCAACAAAATGAGTTCCCAAGGAAATGATCCAATTTCTTGTTTCCTCAACTTGCCTCAAGCACTCAACAGCTTTCAAAACCACTGCTCTGCCCTTCTCCACAACCTTTCCAACCCACTTCCGCTTAAAACCCAACTTCAATCTACCTTCTCCACCCTTCTAAACCCTAAACCCAACCCTCCACTTCACTCCACAATTTCACCCTCTGATTCCGTTCCTAAGAAAAGCCCCCTTTGGGCTCGTCTTCCTGAAACTGCCAAAACCCAATTCACCCTCCCTTCTGCCCCTTCTTCTCTCTCCTTGTCAACGGAAGCCATTGAAAAGCGCTTAGCTGGCATTCCTGTTTATGCTCTTAGCAATGCTTCTGAGGAATTCGTCTTGGTTTCTGGTGCTTCCGCTCAAAAATCTCTCGGCTTATTTTGCTTTAAGAAGGACGATGCAGAAACACTTCTTCAACATATTGGAACCATGGATCCTTCAGCGCGCTACGGCTCCAAAGTGGTGCCTGTTGCTTTGAATAAAGTGGGTTTTTCTAAATTTTCCCTATATTCTGTGTGTATAATCTAAACTTCTCTTGTTTTTCTAATCTTGTTATTTTGGGGACTGCGACTGGCTTCTTTTGCAGGTTTTTCAGCTTAATGTCAATGGGGTGGCCTTCAGGTTAATTCCAGAATGCTCTCAGGTGAAAAATGCTCTGACTGTAAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATGTGGTGTTTATGGATAGCGGGAATGGTTTTTGAATTTAGTTTCTCTGAGGTTCTTTCTTTGTCAAATCACGATAGTACTGAATACCCGTTGCTATTTTTCGTTATCATTTTATGGTTGTGGCTGAGGCCCAAAAGTCAATTTATGCACTTGTCATCATCTTTACTTATCACATGTTCTTGTTTGTATTTTGACAATAATCATTTGCCTGCGTAGGAAAGAAAGAAGGCTGGCATTTCTGCTGATGGATTTTCTGGGGTTCCTGTTTTCCAGGTTCATTTATAACATTTCTTACTTAAAATTGTTATTCATAC

mRNA sequence

ATGAGTTCCCAAGGAAATGATCCAATTTCTTGTTTCCTCAACTTGCCTCAAGCACTCAACAGCTTTCAAAACCACTGCTCTGCCCTTCTCCACAACCTTTCCAACCCACTTCCGCTTAAAACCCAACTTCAATCTACCTTCTCCACCCTTCTAAACCCTAAACCCAACCCTCCACTTCACTCCACAATTTCACCCTCTGATTCCGTTCCTAAGAAAAGCCCCCTTTGGGCTCGTCTTCCTGAAACTGCCAAAACCCAATTCACCCTCCCTTCTGCCCCTTCTTCTCTCTCCTTGTCAACGGAAGCCATTGAAAAGCGCTTAGCTGGCATTCCTGTTTATGCTCTTAGCAATGCTTCTGAGGAATTCGTCTTGGTTTCTGGTGCTTCCGCTCAAAAATCTCTCGGCTTATTTTGCTTTAAGAAGGACGATGCAGAAACACTTCTTCAACATATTGGAACCATGGATCCTTCAGCGCGCTACGGCTCCAAAGTGGTGCCTGTTGCTTTGAATAAAGTTTTTCAGCTTAATGTCAATGGGGTGGCCTTCAGGTTAATTCCAGAATGCTCTCAGGTGAAAAATGCTCTGACTGAAAGAAAGAAGGCTGGCATTTCTGCTGATGGATTTTCTGGGGTTCCTGTTTTCCAGGTTCATTTATAA

Coding sequence (CDS)

ATGAGTTCCCAAGGAAATGATCCAATTTCTTGTTTCCTCAACTTGCCTCAAGCACTCAACAGCTTTCAAAACCACTGCTCTGCCCTTCTCCACAACCTTTCCAACCCACTTCCGCTTAAAACCCAACTTCAATCTACCTTCTCCACCCTTCTAAACCCTAAACCCAACCCTCCACTTCACTCCACAATTTCACCCTCTGATTCCGTTCCTAAGAAAAGCCCCCTTTGGGCTCGTCTTCCTGAAACTGCCAAAACCCAATTCACCCTCCCTTCTGCCCCTTCTTCTCTCTCCTTGTCAACGGAAGCCATTGAAAAGCGCTTAGCTGGCATTCCTGTTTATGCTCTTAGCAATGCTTCTGAGGAATTCGTCTTGGTTTCTGGTGCTTCCGCTCAAAAATCTCTCGGCTTATTTTGCTTTAAGAAGGACGATGCAGAAACACTTCTTCAACATATTGGAACCATGGATCCTTCAGCGCGCTACGGCTCCAAAGTGGTGCCTGTTGCTTTGAATAAAGTTTTTCAGCTTAATGTCAATGGGGTGGCCTTCAGGTTAATTCCAGAATGCTCTCAGGTGAAAAATGCTCTGACTGAAAGAAAGAAGGCTGGCATTTCTGCTGATGGATTTTCTGGGGTTCCTGTTTTCCAGGTTCATTTATAA

Homology

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BLAST of CSPI06G02830 vs. Swiss-Prot
Match: TI22L_ARATH (Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana GN=TIC22L PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.0e-44
Identity = 114/214 (53.27%), Postives = 143/214 (66.82%), Query Frame = 1


Query: 14  NLPQALNSFQNHCSALLHNLSNPL-PL-----KTQLQSTFSTL--LNPKPNPPLHSTISP 73
           N+ Q+ ++ Q+ CS LL N+S  L PL          + FS L     +    L S IS 
Sbjct: 17  NIQQSFSNLQSQCSNLLLNVSQTLNPLFNANTNNNKPNIFSALNSFRDQAKQALDSRISR 76

Query: 74  SDSVPKKSPLWARLPET---AKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASEEF 133
            +S   K+P+WAR+ +    A+ Q T+P   S   LS +AIE+RLAG+PVYALSN++EEF
Sbjct: 77  FNS--GKAPVWARISDDGGGARAQVTVPIRGSGKGLSADAIEERLAGVPVYALSNSNEEF 136

Query: 134 VLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSAR-YGSKVVPVALNKVFQLNVNGVA 193
           VLVSG S+ KSLGL   K++DAETLL+ + +MDP  R  GSKVV +AL+KVFQL VNGVA
Sbjct: 137 VLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPRMRKEGSKVVALALSKVFQLKVNGVA 196

Query: 194 FRLIPECSQVKNALTERKKAGISADGFSGVPVFQ 216
           FRLIPE +QVKNAL ERK AGI  D F GVPVFQ
Sbjct: 197 FRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQ 228

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BLAST of CSPI06G02830 vs. Swiss-Prot
Match: TIC22_PEA (Protein TIC 22, chloroplastic OS=Pisum sativum GN=TIC22 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-22
Identity = 61/150 (40.67%), Postives = 87/150 (58.00%), Query Frame = 1


Query: 75  LWARLPETAKTQFTLPSAPS------SLSLSTEAIEKRLAGIPVYALSNASEEFVLVSGA 134
           L  RL ET +   TL  + +      + +L+   + K LAG  VY +SN+  EFVL+S A
Sbjct: 24  LATRLEETKRLAGTLIQSHTRTKPAFAATLTPNHVAKSLAGTSVYTVSNSDNEFVLMSDA 83

Query: 135 SAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKVFQLNVNGVAFRLIPEC 194
              KS+GL CF+++DAE  L  + +     R G+KVVP+ L++V+ L V G+AFR +P+ 
Sbjct: 84  EGAKSIGLLCFRQEDAEAFLAQVRSRKKEFRGGAKVVPITLDQVYMLKVEGIAFRFLPDP 143

Query: 195 SQVKNALTERKKAGISADGFSGVPVFQVHL 219
            Q+KNAL  R     +   F GVPVFQ  L
Sbjct: 144 VQIKNALELR---AANRGSFDGVPVFQSDL 170

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BLAST of CSPI06G02830 vs. Swiss-Prot
Match: TIC22_ARATH (Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.2e-21
Identity = 68/202 (33.66%), Postives = 106/202 (52.48%), Query Frame = 1


Query: 18  ALNSFQNH-CSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLHSTISPSDSVPKKSPLW 77
           + +SF +H C+    +LS  +    +   T +T     P PP  +++S S S        
Sbjct: 12  SFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRRFSLPTPPPFASVSQSKS-------- 71

Query: 78  ARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASEEFVLVSGASAQKSLGL 137
                           P++ +LS   + K LAG  V+ +SN + EFVL+S  +  KS+GL
Sbjct: 72  --------------GTPTT-TLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGL 131

Query: 138 FCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKVFQLNVNGVAFRLIPECSQVKNALT 197
            CF+++DAE  L          +  +KVVP+ L++V+ L V G++FR +P+  Q+KNAL 
Sbjct: 132 LCFRQEDAEAFLAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNAL- 188

Query: 198 ERKKAGISADGFSGVPVFQVHL 219
           E K +G + +GF GVPVFQ  L
Sbjct: 192 ELKSSG-NKNGFDGVPVFQSEL 188

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BLAST of CSPI06G02830 vs. TrEMBL
Match: A0A0A0KC14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G022290 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 3.7e-89
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1


Query: 1   MSSQGNDPISCFLNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH 60
           MSSQGNDPISCFLNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH
Sbjct: 1   MSSQGNDPISCFLNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH 60

Query: 61  STISPSDSVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASE 120
           STISPSDSVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASE
Sbjct: 61  STISPSDSVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASE 120

Query: 121 EFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKV 173
           EFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKV
Sbjct: 121 EFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKV 172

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BLAST of CSPI06G02830 vs. TrEMBL
Match: M5XLW7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023049mg PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 9.3e-56
Identity = 133/214 (62.15%), Postives = 152/214 (71.03%), Query Frame = 1


Query: 15  LPQALNSFQNHCSALLHNLS-------NPLPLKTQLQSTFSTLLNPKPNPPLHSTISPSD 74
           L QA  + QNHCS  LH+LS       NP  LKTQL+STF+ L N   +         S 
Sbjct: 1   LQQAFTNIQNHCSGFLHHLSHFPVFNPNPSSLKTQLESTFANLQNQAKHA---FNTGLSS 60

Query: 75  SVPK----KSPLWARLPETAKTQFT-LPSAPSSLSLSTEAIEKRLAGIPVYALSNASEEF 134
           SVPK    K+P+WAR+    KTQ T  P   S  ++STEAIE+RLAG+PVYALSNA+EEF
Sbjct: 61  SVPKHSSGKTPVWARIAVNNKTQTTNSPGNGSKAAMSTEAIEERLAGVPVYALSNAAEEF 120

Query: 135 VLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKVFQLNVNGVAF 194
           VLVSGAS+ KSLGLFCFKK+DAE LL+HI  MDP  R GSKVV VALNKVFQL V+GVAF
Sbjct: 121 VLVSGASSGKSLGLFCFKKEDAEALLEHIRIMDPGMRSGSKVVAVALNKVFQLKVDGVAF 180

Query: 195 RLIPECSQVKNALTERKKAGIS-ADGFSGVPVFQ 216
           RLIPE SQVKNAL E++K G S  DGF GVPVFQ
Sbjct: 181 RLIPEYSQVKNALKEKEKVGTSDDDGFPGVPVFQ 211

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BLAST of CSPI06G02830 vs. TrEMBL
Match: A0A067KL92_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13129 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 7.6e-50
Identity = 123/203 (60.59%), Postives = 140/203 (68.97%), Query Frame = 1


Query: 17  QALNSFQNHCSALLHNLSN-PLPLKTQLQSTFSTLLNPKPNPPLHSTISPSDSVPKK--S 76
           Q   SFQNHCSA++ NLS  PL  +T  Q+T   L N      + +TIS  +  P     
Sbjct: 24  QPFASFQNHCSAVVQNLSQFPLFNQTHFQTTLCNLQN-HTRQVIDNTISFFNPNPSSLCK 83

Query: 77  PLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASEEFVLVSGASAQKS 136
           PLWAR+P   KT    P   S   +STE IE+RLAG+PVYALSN +EEFVLVSG S  KS
Sbjct: 84  PLWARIPHDTKTPLE-PVRQSRTVMSTETIEERLAGVPVYALSNPNEEFVLVSGVSTAKS 143

Query: 137 LGLFCFKKDDAETLLQHIGTMDPSAR-YGSKVVPVALNKVFQLNVNGVAFRLIPECSQVK 196
           LGL CFKK+DAE LL+ + +MDP  R  GSKVV VALNKVFQL V GVAFRLIPE SQVK
Sbjct: 144 LGLLCFKKEDAEALLEQMKSMDPGMRKSGSKVVAVALNKVFQLKVQGVAFRLIPESSQVK 203

Query: 197 NALTERKKAGISADGFSGVPVFQ 216
           NAL E +KAGIS DGFSGVPVFQ
Sbjct: 204 NALREMEKAGISDDGFSGVPVFQ 224

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BLAST of CSPI06G02830 vs. TrEMBL
Match: W9RUL2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026859 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 7.6e-50
Identity = 120/210 (57.14%), Postives = 145/210 (69.05%), Query Frame = 1


Query: 13  LNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLHSTISPSDSVPKK 72
           LNL QA  +FQ++CS+L + +S+    +T LQST S L +    P    + + S     K
Sbjct: 23  LNLQQAFTTFQHNCSSLFNQISHDT--RTHLQSTLSDLQSRTKFPFFERSSNGSSG---K 82

Query: 73  SPLWARLPETAKTQFTLPSAPSS-------LSLSTEAIEKRLAGIPVYALSNASEEFVLV 132
            P+WAR+  T       P  P +         +STEAIE+RLAG+PVYALSNASEEFVLV
Sbjct: 83  KPVWARISPTNNA----PQIPRNSRVRCPRTGMSTEAIEERLAGVPVYALSNASEEFVLV 142

Query: 133 SGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKVFQLNVNGVAFRLI 192
           SGAS+ KSLGLFCF+K+DAE LL  I +MDP  + GSKVV VALNKVFQL VNGV+FRLI
Sbjct: 143 SGASSGKSLGLFCFRKEDAEALLDQIASMDPRMQDGSKVVAVALNKVFQLKVNGVSFRLI 202

Query: 193 PECSQVKNALTERKKAGISADGFSGVPVFQ 216
           PE SQV+NAL ER+KAG S DGF GVPVFQ
Sbjct: 203 PETSQVQNALKEREKAGFSDDGFPGVPVFQ 223

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BLAST of CSPI06G02830 vs. TrEMBL
Match: B9GNE4_POPTR (Chloroplast inner membrane import protein Tic22 OS=Populus trichocarpa GN=POPTR_0002s23710g PE=4 SV=2)

HSP 1 Score: 204.1 bits (518), Expect = 1.7e-49
Identity = 115/209 (55.02%), Postives = 144/209 (68.90%), Query Frame = 1


Query: 13  LNLPQALNSFQNHCSALLHNLSNPLPL-----KTQLQSTFSTLLNPKPNPPLHSTISPSD 72
           ++L  A  + Q+HCS  L NLS+  PL     +T  + +  TL+         S ++P+ 
Sbjct: 22  IDLHHAFTTLQDHCSTFLQNLSHQFPLFNPNFQTHAKQSLDTLI---------SRLNPNS 81

Query: 73  SVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASEEFVLVSG 132
            +  K+PLWAR+P         P      S+STE IE+RLAG+PVYALSN++EEFVLVSG
Sbjct: 82  PLSSKNPLWARIPHE-------PVIQPGTSMSTETIEERLAGVPVYALSNSNEEFVLVSG 141

Query: 133 ASAQKSLGLFCFKKDDAETLLQHIGTMDPSARY-GSKVVPVALNKVFQLNVNGVAFRLIP 192
            S  KSLGLFCFK++DAE LL+ + +MDP  R  GSKVVPVALNKVFQL V+GVAFRLIP
Sbjct: 142 LSTGKSLGLFCFKQEDAEALLEQMKSMDPGMRKGGSKVVPVALNKVFQLKVDGVAFRLIP 201

Query: 193 ECSQVKNALTERKKAGISADGFSGVPVFQ 216
           E SQVKNAL ER++AG+S D FSGVPVFQ
Sbjct: 202 EPSQVKNALMERERAGLSDDCFSGVPVFQ 214

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BLAST of CSPI06G02830 vs. TAIR10
Match: AT3G23710.1 (AT3G23710.1 Tic22-like family protein)

HSP 1 Score: 179.5 bits (454), Expect = 2.3e-45
Identity = 114/214 (53.27%), Postives = 143/214 (66.82%), Query Frame = 1


Query: 14  NLPQALNSFQNHCSALLHNLSNPL-PL-----KTQLQSTFSTL--LNPKPNPPLHSTISP 73
           N+ Q+ ++ Q+ CS LL N+S  L PL          + FS L     +    L S IS 
Sbjct: 17  NIQQSFSNLQSQCSNLLLNVSQTLNPLFNANTNNNKPNIFSALNSFRDQAKQALDSRISR 76

Query: 74  SDSVPKKSPLWARLPET---AKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASEEF 133
            +S   K+P+WAR+ +    A+ Q T+P   S   LS +AIE+RLAG+PVYALSN++EEF
Sbjct: 77  FNS--GKAPVWARISDDGGGARAQVTVPIRGSGKGLSADAIEERLAGVPVYALSNSNEEF 136

Query: 134 VLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSAR-YGSKVVPVALNKVFQLNVNGVA 193
           VLVSG S+ KSLGL   K++DAETLL+ + +MDP  R  GSKVV +AL+KVFQL VNGVA
Sbjct: 137 VLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPRMRKEGSKVVALALSKVFQLKVNGVA 196

Query: 194 FRLIPECSQVKNALTERKKAGISADGFSGVPVFQ 216
           FRLIPE +QVKNAL ERK AGI  D F GVPVFQ
Sbjct: 197 FRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQ 228

[Close]

BLAST of CSPI06G02830 vs. TAIR10
Match: AT4G33350.1 (AT4G33350.1 Tic22-like family protein)

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-22
Identity = 68/202 (33.66%), Postives = 106/202 (52.48%), Query Frame = 1


Query: 18  ALNSFQNH-CSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLHSTISPSDSVPKKSPLW 77
           + +SF +H C+    +LS  +    +   T +T     P PP  +++S S S        
Sbjct: 12  SFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRRFSLPTPPPFASVSQSKS-------- 71

Query: 78  ARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASEEFVLVSGASAQKSLGL 137
                           P++ +LS   + K LAG  V+ +SN + EFVL+S  +  KS+GL
Sbjct: 72  --------------GTPTT-TLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGL 131

Query: 138 FCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKVFQLNVNGVAFRLIPECSQVKNALT 197
            CF+++DAE  L          +  +KVVP+ L++V+ L V G++FR +P+  Q+KNAL 
Sbjct: 132 LCFRQEDAEAFLAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNAL- 188

Query: 198 ERKKAGISADGFSGVPVFQVHL 219
           E K +G + +GF GVPVFQ  L
Sbjct: 192 ELKSSG-NKNGFDGVPVFQSEL 188

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BLAST of CSPI06G02830 vs. NCBI nr
Match: gi|449441171|ref|XP_004138357.1| (PREDICTED: protein TIC 22-like, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 422.2 bits (1084), Expect = 5.7e-115
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1


Query: 1   MSSQGNDPISCFLNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH 60
           MSSQGNDPISCFLNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH
Sbjct: 1   MSSQGNDPISCFLNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH 60

Query: 61  STISPSDSVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASE 120
           STISPSDSVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASE
Sbjct: 61  STISPSDSVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASE 120

Query: 121 EFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKVFQLNVNGV 180
           EFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKVFQLNVNGV
Sbjct: 121 EFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKVFQLNVNGV 180

Query: 181 AFRLIPECSQVKNALTERKKAGISADGFSGVPVFQ 216
           AFRLIPECSQVKNALTERKKAGISADGFSGVPVFQ
Sbjct: 181 AFRLIPECSQVKNALTERKKAGISADGFSGVPVFQ 215

[Close]

BLAST of CSPI06G02830 vs. NCBI nr
Match: gi|778709919|ref|XP_011656477.1| (PREDICTED: protein TIC 22-like, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 422.2 bits (1084), Expect = 5.7e-115
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1


Query: 1   MSSQGNDPISCFLNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH 60
           MSSQGNDPISCFLNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH
Sbjct: 1   MSSQGNDPISCFLNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH 60

Query: 61  STISPSDSVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASE 120
           STISPSDSVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASE
Sbjct: 61  STISPSDSVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASE 120

Query: 121 EFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKVFQLNVNGV 180
           EFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKVFQLNVNGV
Sbjct: 121 EFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKVFQLNVNGV 180

Query: 181 AFRLIPECSQVKNALTERKKAGISADGFSGVPVFQ 216
           AFRLIPECSQVKNALTERKKAGISADGFSGVPVFQ
Sbjct: 181 AFRLIPECSQVKNALTERKKAGISADGFSGVPVFQ 215

[Close]

BLAST of CSPI06G02830 vs. NCBI nr
Match: gi|659128709|ref|XP_008464334.1| (PREDICTED: protein TIC 22-like, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 393.3 bits (1009), Expect = 2.8e-106
Identity = 200/215 (93.02%), Postives = 205/215 (95.35%), Query Frame = 1


Query: 1   MSSQGNDPISCFLNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH 60
           MSS GNDPIS FLNLPQALNSFQNHCS LLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH
Sbjct: 42  MSSHGNDPISSFLNLPQALNSFQNHCSTLLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH 101

Query: 61  STISPSDSVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASE 120
           STISPSDSVP K+PLWARLPETAKTQF+ PS+PS LSLSTEAIE+RLAGIPVYALSNASE
Sbjct: 102 STISPSDSVPNKNPLWARLPETAKTQFSRPSSPSPLSLSTEAIEERLAGIPVYALSNASE 161

Query: 121 EFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKVFQLNVNGV 180
           EFVLVSGAS QKSLG FCFKKDDAETLLQHIGTMDPSA YGSKVVPVALNKVFQL+VNGV
Sbjct: 162 EFVLVSGASTQKSLGFFCFKKDDAETLLQHIGTMDPSAHYGSKVVPVALNKVFQLHVNGV 221

Query: 181 AFRLIPECSQVKNALTERKKAGISADGFSGVPVFQ 216
           AFRLIPECSQVKNALTERKKAGISAD FSGVPVFQ
Sbjct: 222 AFRLIPECSQVKNALTERKKAGISADEFSGVPVFQ 256

[Close]

BLAST of CSPI06G02830 vs. NCBI nr
Match: gi|659128707|ref|XP_008464333.1| (PREDICTED: protein TIC 22-like, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 393.3 bits (1009), Expect = 2.8e-106
Identity = 200/215 (93.02%), Postives = 205/215 (95.35%), Query Frame = 1


Query: 1   MSSQGNDPISCFLNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH 60
           MSS GNDPIS FLNLPQALNSFQNHCS LLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH
Sbjct: 42  MSSHGNDPISSFLNLPQALNSFQNHCSTLLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH 101

Query: 61  STISPSDSVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASE 120
           STISPSDSVP K+PLWARLPETAKTQF+ PS+PS LSLSTEAIE+RLAGIPVYALSNASE
Sbjct: 102 STISPSDSVPNKNPLWARLPETAKTQFSRPSSPSPLSLSTEAIEERLAGIPVYALSNASE 161

Query: 121 EFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKVFQLNVNGV 180
           EFVLVSGAS QKSLG FCFKKDDAETLLQHIGTMDPSA YGSKVVPVALNKVFQL+VNGV
Sbjct: 162 EFVLVSGASTQKSLGFFCFKKDDAETLLQHIGTMDPSAHYGSKVVPVALNKVFQLHVNGV 221

Query: 181 AFRLIPECSQVKNALTERKKAGISADGFSGVPVFQ 216
           AFRLIPECSQVKNALTERKKAGISAD FSGVPVFQ
Sbjct: 222 AFRLIPECSQVKNALTERKKAGISADEFSGVPVFQ 256

[Close]

BLAST of CSPI06G02830 vs. NCBI nr
Match: gi|700190713|gb|KGN45917.1| (hypothetical protein Csa_6G022290 [Cucumis sativus])

HSP 1 Score: 335.9 bits (860), Expect = 5.4e-89
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1


Query: 1   MSSQGNDPISCFLNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH 60
           MSSQGNDPISCFLNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH
Sbjct: 1   MSSQGNDPISCFLNLPQALNSFQNHCSALLHNLSNPLPLKTQLQSTFSTLLNPKPNPPLH 60

Query: 61  STISPSDSVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASE 120
           STISPSDSVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASE
Sbjct: 61  STISPSDSVPKKSPLWARLPETAKTQFTLPSAPSSLSLSTEAIEKRLAGIPVYALSNASE 120

Query: 121 EFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKV 173
           EFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKV
Sbjct: 121 EFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSARYGSKVVPVALNKV 172

The following BLAST results are available for this feature:

BLAST of CSPI06G02830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI22L_ARATH	4.0e-44	53.27	Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana GN=TIC22L PE=3 SV=1	[more]
TIC22_PEA	1.9e-22	40.67	Protein TIC 22, chloroplastic OS=Pisum sativum GN=TIC22 PE=1 SV=1	[more]
TIC22_ARATH	6.2e-21	33.66	Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1 SV=1	[more]

BLAST of CSPI06G02830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC14_CUCSA	3.7e-89	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G022290 PE=4 SV=1	[more]
M5XLW7_PRUPE	9.3e-56	62.15	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023049mg PE=4 S...	[more]
A0A067KL92_JATCU	7.6e-50	60.59	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13129 PE=4 SV=1	[more]
W9RUL2_9ROSA	7.6e-50	57.14	Uncharacterized protein OS=Morus notabilis GN=L484_026859 PE=4 SV=1	[more]
B9GNE4_POPTR	1.7e-49	55.02	Chloroplast inner membrane import protein Tic22 OS=Populus trichocarpa GN=POPTR_...	[more]

BLAST of CSPI06G02830 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23710.1	2.3e-45	53.27	Tic22-like family protein	[more]
AT4G33350.1	3.5e-22	33.66	Tic22-like family protein	[more]

BLAST of CSPI06G02830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441171\|ref\|XP_004138357.1\|	5.7e-115	100.00	PREDICTED: protein TIC 22-like, chloroplastic isoform X1 [Cucumis sativus]	[more]
gi\|778709919\|ref\|XP_011656477.1\|	5.7e-115	100.00	PREDICTED: protein TIC 22-like, chloroplastic isoform X2 [Cucumis sativus]	[more]
gi\|659128709\|ref\|XP_008464334.1\|	2.8e-106	93.02	PREDICTED: protein TIC 22-like, chloroplastic isoform X2 [Cucumis melo]	[more]
gi\|659128707\|ref\|XP_008464333.1\|	2.8e-106	93.02	PREDICTED: protein TIC 22-like, chloroplastic isoform X1 [Cucumis melo]	[more]
gi\|700190713\|gb\|KGN45917.1\|	5.4e-89	100.00	hypothetical protein Csa_6G022290 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007378	Tic22-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015031	protein transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009536	plastid
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G02830.1	CSPI06G02830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007378	Tic22-like	PFAM	PF04278	Tic22	coord: 42..216 score: 1.6
None	No IPR available	PANTHER	PTHR33926	FAMILY NOT NAMED	coord: 9..215 score: 5.9
None	No IPR available	PANTHER	PTHR33926:SF1	PROTEIN TIC 22-LIKE, CHLOROPLASTIC	coord: 9..215 score: 5.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G02830	Csa6G022290	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G02830	MELO3C026126	Melon (DHL92) v3.5.1	cpimeB479
CSPI06G02830	MELO3C026126.2	Melon (DHL92) v3.6.1	cpimedB464
CSPI06G02830	CsaV3_6G003080	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G02830	Cla97C08G147100	Watermelon (97103) v2	cpiwmbB516
CSPI06G02830	Cucsa.365650	Cucumber (Gy14) v1	cgycpiB540
CSPI06G02830	CmoCh08G001070	Cucurbita moschata (Rifu)	cmocpiB901
CSPI06G02830	Cp4.1LG17g10110	Cucurbita pepo (Zucchini)	cpecpiB336
CSPI06G02830	CsGy6G002920	Cucumber (Gy14) v2	cgybcpiB288

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G02830	Cucurbita maxima (Rimu)	cmacpiB381
CSPI06G02830	Cucurbita maxima (Rimu)	cmacpiB931
CSPI06G02830	Cucurbita moschata (Rifu)	cmocpiB370
CSPI06G02830	Cucurbita moschata (Rifu)	cmocpiB910
CSPI06G02830	Melon (DHL92) v3.5.1	cpimeB468
CSPI06G02830	Watermelon (Charleston Gray)	cpiwcgB530
CSPI06G02830	Watermelon (97103) v1	cpiwmB491
CSPI06G02830	Cucurbita pepo (Zucchini)	cpecpiB150
CSPI06G02830	Bottle gourd (USVL1VR-Ls)	cpilsiB483
CSPI06G02830	Silver-seed gourd	carcpiB0098
CSPI06G02830	Silver-seed gourd	carcpiB0254
CSPI06G02830	Wax gourd	cpiwgoB586