CSPI06G02250 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAAAAAAAGCTAACACAATTTTATAAATATTTTTAAAACCACTATGTTTCAAATAAAAGTTTCGATATTTATCCAAATTTCTCCTTTAAAAGCGCCCTCTTTATGATTATTCCGTATCTCTTCCCTCTGTTCAATAACAGTTCATTCGTTTCCTTTCTTCTCCGGCACTTCCGCGGCAGCCAAACCCGCCTCTCGCCGGACACCATCACCACCTAACAACCATCTTTGAGTCTTCTCTTTGCTCCCTCCTTCTCCGCTGCCTCCATTATCGGTCGCCAGTACGCCTCAGCATTCGATTTCTCTATTTTTCCTTCATCACCGCCACGCTGCTACCAGGACCTGTAGAACTCCATCTCGAGGTCTGTCGAAGTTTTTTTTTTTTTATCCTCTTGCTTTTCTTTATTTACAATCTGATCATGAATAGAACGATTAATTTCTTTAAATGCATATATTCCTTTAACTCAAGAGGTTTGCTACTCTAAATCACGCGGTCCAATTCGAATCTTTAAACGTTGACTCTTGTATATCTTGCAAAAATTTTCCTAATTTTGTAATCATATGTTTCACAGTTCTCTTGAACTTATTGTGAAAATTTTGTGCTAAGTCATTCAGTTGGGGCTCAAATGCCATCTAGTTTAGGGTTTATTGCTGCCGACTTTTGAGAGGGTTTTTAGTTCATGATTATTTGGTTAATGTAAAATTGATTTGGGCTTCATTTAAGTGTGAAACGCATCCATCATTTATCTCTTAAAATTAAAGATTAACCATGAACAAGTTGATCGAGTTTTCGTGTGTAGGCTTGCGAAGTATCTTACTAAGTTACTAGCTCATTAATGGAAAACAATGATTAAAATTATGAAACATAAGAGTGCCTTCATGTATTTAATGAGTTACATCACGAGGACAATTTGTTAAGGTTATAAACTAAATCCAATATTAGCAAATGAGAGAACCTTTTGGGTCATTCTATTTCGAGTTTCTTCTCATCGATCTTAACTTTTATCCTGAATCAGTTTTTAACTTAGGCCTTCTAATTTGGTGTCTTGTAATTTTGATATATTTATTTAGTTGGGCGAAGTTAACTTTTTTACTTTGTAGATTTAGTTGTAATCTTGCTGTACTCTGTCCCCAAATATTTTAGGTTGACACAGAACTCCAACTTCAAGCATGTCCGGGGAGGAGGAAGAAAATGCTGCTGAGCTTAAAATTGGAGATGGTAGAAATCTATCTATAAATTAAAACTTCCTATCTATATTCAATGAGAATTTAAGTTTCTTGCATATTTATGGTGATGGGTTTCCTTCATATATTTGTAAAATTAGAATTTTATAAGCAACTGATGTATTTAATTTTTTATTTTGCTCAAAAAGTTAGAAACTTAATTTATAATGTTATACCCCATGACTAATACCCCATGACATTATATGTATCATTATTGCGATTCTTTGATCCTTCTAGTGGCCAATACCGATAGGGAGACTGTTCTTATGTACAATGCATATAGATATAGTTTAAATTGGAAATGTGGAGTTAATGTTATCTTCAAGCAGTTTTATGGGTAGTGCGGTAATAATCTCTTAGGCCTGAGGGGAGAAAGGCTGAACTTCCTTAGTTCTTTAAGATCGATAGCTATGTGATTATATATTGTAGCCATGTAGTATCTCATAACTTTCTTGGATATTGTTCGGTAAGTCATAGTCATTTGATTGGTGGCTTGATGACACGTCAACAAAAGAAGTTTATTTTGTCTATATCTTCCCATTGTGTTTTACGATATCATGTTGTTTCTCATAATATTTTAAGCTAGCTCATTTACTTCAAAGGAATACTTCCTTCATATGATGTTAAAGGGTCAAATGGCTGAATGCTTTGAGTTCTCTTATATTTTGGATTAATATCATATTGGTTATTAGGTTTTTAAAAAAATTTAGATGAAAATGTGTGATCTATTCCGTATCTAAATTCTTATCTATGATTATTCTGGCAAAAAGATAACCAATTATTGTAAGTTTTTCCATTCTTATGAATCTATGAAAATGCGGACTCGAGAATGACCAAATATTTGGTTTACATAAGTAATTGTGCAAAAGTCAAGCTCTTGCACCCAAATCATTTTGGTGTATATTCTAAGCTTTGAAAGGTAATAACTGGCGTTTACTTTCTTTGGTTACTTGCAGAGTTCTTAAAAGCCAAATGTTTAATGAATTGTGAAGTTTCTCTAATCCTTGAACATAAATATGAGCAACTTCAACAGATGTCTGAGGATCCAACAAATCAAGTTTCCCAGTGAGTTTTATGTACATCCTTTATTGATTCATGAGTTAATTTAGAGAAGCTACTATATAATTTTTTAAAAATAAAATGACAAGAGAATTCTTAATTATGGTCTTATTTTGCAGAGTGTTTGAAAAGTCACTTCAATATGTGAAACGCTTCAGCCGTTATAAGAATCCCGATGCTGTTAGACAAGTTCGAGAGTATCCTTAAAACTATATATGTTGATGTTTTTACTGGGTGAGAAGGCACGTTTCATTTTATTTGATGGCGGGAATGGTCAACTACCAAGCTAAAAACCCTCTTTGGTTAATTATTTTTTTGGGAAATACTTAATAAATTAGAAGTTCACATAACCATACCATTTACCAACGTAATTATGAATTGAAAGTTTGGGGTATCATTGTTTAGAAATGGATTAAATAATGTGTAATTGTTATCTTTTGAAATATTGAATCTTAACAAACAAACAAACAGAGTTCTAAGCAGGTATCAGTTGGCGGAGTTTGAGGTATGTACTCTAGACACCTTGGTTTAATCATTTTGTGTAATATTATCGTCTCTTTCTTTTTTGAGGAAACGCTTATCTCATTAGTTTCGAAATTTGCAGCTTTGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAAGAAGCCATTGCCATGGTACCATCATTGAAGGTATCTTTTGCCACTTTTGTGCTATTGGATTAGCCAAGTATCAATCGTTTTTCTGTTTGGTTGAACCCATAGTATATTTATAGTTATCTTGCTAAATCATAGATACGATTTTTTGGAAGTTTACTATTATTGTATTTGTCTCTCAACATTGAACATGCATCAAATTTTAAGATGTTACTTAAAACTTTAAAATTTTGATATGATCTTTTTCTTTTCCATCTTTTGAAAACAGAAGTTAATCGCTTATGAATGATTTTGTTTTTGCTGGTTTCAGACCAAGGGAAGGGTGCATGACGATGAAGCAATTGAGAAGATGTTGAATGATCTTTCATTAATCAAAAGATTTGAGTAGTTAGTTAAATGTGTAAACAGAATTATACCCTTGCATAATTTAGAGTTATGACTTTATGGGTGAGTTTGTAATTGGGATCCTCAACCGACTGGAGGATCATAAACTCTTTGATATTTACAAGGATTTATTATGATTATGTGTTTGGCTTTGGGGTTTCTATTTTTTAGA ATGTCCGGGGAGGAGGAAGAAAATGCTGCTGAGCTTAAAATTGGAGATGAGTTCTTAAAAGCCAAATGTTTAATGAATTGTGAAGTTTCTCTAATCCTTGAACATAAATATGAGCAACTTCAACAGATGTCTGAGGATCCAACAAATCAAGTTTCCCAAGTGTTTGAAAAGTCACTTCAATATGTGAAACGCTTCAGCCGTTATAAGAATCCCGATGCTGTTAGACAAGTTCGAGAAGTTCTAAGCAGGTATCAGTTGGCGGAGTTTGAGCTTTGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAAGAAGCCATTGCCATGGTACCATCATTGAAGACCAAGGGAAGGGTGCATGACGATGAAGCAATTGAGAAGATGTTGAATGATCTTTCATTAATCAAAAGATTTGAGTAG ATGTCCGGGGAGGAGGAAGAAAATGCTGCTGAGCTTAAAATTGGAGATGAGTTCTTAAAAGCCAAATGTTTAATGAATTGTGAAGTTTCTCTAATCCTTGAACATAAATATGAGCAACTTCAACAGATGTCTGAGGATCCAACAAATCAAGTTTCCCAAGTGTTTGAAAAGTCACTTCAATATGTGAAACGCTTCAGCCGTTATAAGAATCCCGATGCTGTTAGACAAGTTCGAGAAGTTCTAAGCAGGTATCAGTTGGCGGAGTTTGAGCTTTGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAAGAAGCCATTGCCATGGTACCATCATTGAAGACCAAGGGAAGGGTGCATGACGATGAAGCAATTGAGAAGATGTTGAATGATCTTTCATTAATCAAAAGATTTGAGTAG
BLAST of CSPI06G02250 vs. Swiss-Prot
Match: NRPB4_ARATH (DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana GN=NRPB4 PE=1 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 1.1e-68 Identity = 129/138 (93.48%), Postives = 135/138 (97.83%), Query Frame = 1
BLAST of CSPI06G02250 vs. Swiss-Prot
Match: RPB4_HUMAN (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens GN=POLR2D PE=1 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 3.0e-21 Identity = 55/137 (40.15%), Postives = 93/137 (67.88%), Query Frame = 1
BLAST of CSPI06G02250 vs. Swiss-Prot
Match: RPB4_MOUSE (DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus GN=Polr2d PE=1 SV=2) HSP 1 Score: 102.8 bits (255), Expect = 3.0e-21 Identity = 55/137 (40.15%), Postives = 93/137 (67.88%), Query Frame = 1
BLAST of CSPI06G02250 vs. Swiss-Prot
Match: RPB4_DICDI (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum GN=polr2d PE=3 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 1.1e-18 Identity = 55/147 (37.41%), Postives = 90/147 (61.22%), Query Frame = 1
BLAST of CSPI06G02250 vs. Swiss-Prot
Match: RPB4_DROME (DNA-directed RNA polymerase II 16 kDa polypeptide OS=Drosophila melanogaster GN=Rpb4 PE=2 SV=5) HSP 1 Score: 88.2 bits (217), Expect = 7.7e-17 Identity = 49/126 (38.89%), Postives = 80/126 (63.49%), Query Frame = 1
BLAST of CSPI06G02250 vs. TrEMBL
Match: A0A0A0K7V5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014650 PE=4 SV=1) HSP 1 Score: 271.9 bits (694), Expect = 4.2e-70 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1
BLAST of CSPI06G02250 vs. TrEMBL
Match: B9H5K4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08690g PE=4 SV=1) HSP 1 Score: 262.3 bits (669), Expect = 3.3e-67 Identity = 130/138 (94.20%), Postives = 136/138 (98.55%), Query Frame = 1
BLAST of CSPI06G02250 vs. TrEMBL
Match: A5APH2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01400 PE=4 SV=1) HSP 1 Score: 262.3 bits (669), Expect = 3.3e-67 Identity = 130/138 (94.20%), Postives = 136/138 (98.55%), Query Frame = 1
BLAST of CSPI06G02250 vs. TrEMBL
Match: A0A061DJ22_THECC (RNA polymerase II, Rpb4, core protein isoform 1 OS=Theobroma cacao GN=TCM_001258 PE=4 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 9.7e-67 Identity = 129/138 (93.48%), Postives = 136/138 (98.55%), Query Frame = 1
BLAST of CSPI06G02250 vs. TrEMBL
Match: R0FHD8_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002229mg PE=4 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 9.7e-67 Identity = 129/138 (93.48%), Postives = 135/138 (97.83%), Query Frame = 1
BLAST of CSPI06G02250 vs. TAIR10
Match: AT5G09920.1 (AT5G09920.1 RNA polymerase II, Rpb4, core protein) HSP 1 Score: 260.4 bits (664), Expect = 6.4e-70 Identity = 129/138 (93.48%), Postives = 135/138 (97.83%), Query Frame = 1
BLAST of CSPI06G02250 vs. TAIR10
Match: AT4G15950.1 (AT4G15950.1 RNA polymerase II, Rpb4, core protein) HSP 1 Score: 87.0 bits (214), Expect = 9.7e-18 Identity = 45/118 (38.14%), Postives = 76/118 (64.41%), Query Frame = 1
BLAST of CSPI06G02250 vs. NCBI nr
Match: gi|449441240|ref|XP_004138390.1| (PREDICTED: DNA-directed RNA polymerase II subunit 4 [Cucumis sativus]) HSP 1 Score: 271.9 bits (694), Expect = 6.0e-70 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1
BLAST of CSPI06G02250 vs. NCBI nr
Match: gi|729300979|ref|XP_010520027.1| (PREDICTED: DNA-directed RNA polymerase II subunit 4 [Tarenaya hassleriana]) HSP 1 Score: 264.6 bits (675), Expect = 9.6e-68 Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 1
BLAST of CSPI06G02250 vs. NCBI nr
Match: gi|225446712|ref|XP_002282413.1| (PREDICTED: DNA-directed RNA polymerase II subunit 4 [Vitis vinifera]) HSP 1 Score: 262.3 bits (669), Expect = 4.8e-67 Identity = 130/138 (94.20%), Postives = 136/138 (98.55%), Query Frame = 1
BLAST of CSPI06G02250 vs. NCBI nr
Match: gi|224083811|ref|XP_002307132.1| (hypothetical protein POPTR_0005s08690g [Populus trichocarpa]) HSP 1 Score: 262.3 bits (669), Expect = 4.8e-67 Identity = 130/138 (94.20%), Postives = 136/138 (98.55%), Query Frame = 1
BLAST of CSPI06G02250 vs. NCBI nr
Match: gi|802759611|ref|XP_012089384.1| (PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]) HSP 1 Score: 262.3 bits (669), Expect = 4.8e-67 Identity = 130/138 (94.20%), Postives = 136/138 (98.55%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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