CSPI06G01880 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G01880
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRNA-binding region RNP-1 protein
LocationChr6 : 1404742 .. 1407302 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTCGTCTAATTCGTTTATTATCAGATGACTGCCATTCCACTTTTTTAATCTGTACCCGCAACGCACCGATTCAAATCCTCTTCCGGGCCTCTCTCCTCTTTTCTATAGCCCATTTCAACTATTAAGGCCCAAAAGCCCATTAGAAGTTACAAACAAAACCCTAATCCTAATTAGCGTTCCCTTTTCCGCGATTTCTCTCTCACGTTCCCCAATTCTGCTCTCCCTTCACCGCCAATTTCAAAGTTTCCGACGCCGATCACCCCTTTCTCCGCCGCCCTCAAAGTTGTTCGATCCCCCTCCGTAAGTGGAGATGCGCATAAGCTAGGCCAGACACTCGCGATACCAAAATGATCTGAAAGCTCGTTTGTTCTTCATGGTGAATCTTTTTCTCTTTTGTTGTGTCATGTAGTTTTTAACCTTAGTTTACAGTATGAAAAATTAGGCTAACTCCTTTAATCGCCGTATTAGATCTCTTATTAGAGATGGGATCGGAGAAGGATGAGCAATTTGCCATGTTTGAAGAGAAGGTTAAACGGACTGTGTATGTTGATAATCTCTCTCTTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAACAGCTCTCAATGTGCTCTAGTGGAAATGAAGGATTCGAAGGAGGCGAAATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGAAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTTCTAAGAAACATGTGGCTGAAGCTGCATTTTTGGTCAAGGTATGAGTTTCAGAATCTCAGTCTCTCAACTTGAATTTCAATTTAGTGCTTAAATAATTGCATTTTGTTAACTTTAATTTGTGATTCTTAGGCGATGGTTGATATTTATTAGATGGATGTTTGTTAATTTAGCACAACGTGGCATGGCTGACAAAAGTAAGAGGCTAGTTAGACAAATGAAGGGACAAATTCAATATGCCTTATGGATTCTTGTCACTGGATTCTGTTTATAGCTATCCTCTCTCTTGTCATCCGTTTATTTGCCATATTCTGCTAAATCAATCTATTACCTTTTGTTTATCTACTAAACATATCATCGAAAGTTAATGTATGTAATTAGATCTTTTTAAGTTTTAAAATTAAATAAACACGACCATTAACCTTCGGACTTGATTTTTAATTTGGTCAAATTATAAGATTGGTTTCACAACTTTGAGAATGTCTCTTGATTATCTAGTTCGTATTAGTGTTGTTGATGCGTAGCCGGCGCTGGCCAGAAGGGATCACCTTTTGCACCTTTTAGTTGCCTTGAACATATGTGCAAGGTGACGCAGATGCTCGCCTTGTTCAATTGTTCAACTTAGTTTTTTACAAAAGGAAAAAAATTCTTCTCCAATACTTTGATAAGAGAAAGTATAGAAGTTTGTAAAGGTAGAATTCAAAAAATCAAAGGAAGGAAGAAAATTTGAAGAAAAAAAGAGTGAAAGAAGTAGAAACAAAATTGAAGCGCTCTTTTCATACATTCCTAGAATTTTCTTTCAAGCTTTCCTTTAAGAATTTATAATTTAATATTATTATTTATTATTTTATTAACTGCATCCCGCTTCGCTCCAATAATAGACTCTTTTTCATACATTCCTAGAGTTTATAACCTTTAGGTGGCACCTTGGATCTTGAAAACACCGATTCATATAATTTTAAATCTCTTTGGTAGGTCTCTTCAACTTTTCTGTTCTGTTTTATAGGTGTCTACTGTGAATCCCATATTCCCATAGGTTTAGGTTTCATGCTTTTGCACCAAACACCTTTGAAAATTGAAACCAACCGATATGGATACCGGCGTACTGCTCAAGTAAGTATTAAGCTAGTGGAGTTAACAACAGATTTATTAGGCTTGAAGTTAAAATGTTCGACACTTATTGAAGTACAAACATTAAATAGATACAAACTTGGAAGTGGGGAATCTATTAGAAAACCTTTAGAATACAGGGCTAAGTAAATGGATTCTAAAAGTTTAGGGATGATATTGGTAATTTGGTCTCGGTCAGATAATTCTTAACGCTGAAAAGTGGTTTGTCCAATTTCTTTGCAGCAACATATGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACACTGAAAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAATTTCAGATGATTAATTAAAGCCTCTGAAGCTTTGCTTTTGTAACCTCTTAATGCCACTGATTTTTACATGTAAATTTGTACAAATTGTCGTTTATATGTATGAATAGAGATGAATTACAGACTTTTGTGATTTAGAGGGAGAAAAATAGATACTTGGTATAATACTCCTAACAACAAGG

mRNA sequence

ATGGGATCGGAGAAGGATGAGCAATTTGCCATGTTTGAAGAGAAGGTTAAACGGACTGTGTATGTTGATAATCTCTCTCTTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAACAGCTCTCAATGTGCTCTAGTGGAAATGAAGGATTCGAAGGAGGCGAAATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGAAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTTCTAAGAAACATGTGGCTGAAGCTGCATTTTTGGTCAAGCAACATATGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACACTGAAAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAATTTCAGATGATTAA

Coding sequence (CDS)

ATGGGATCGGAGAAGGATGAGCAATTTGCCATGTTTGAAGAGAAGGTTAAACGGACTGTGTATGTTGATAATCTCTCTCTTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAACAGCTCTCAATGTGCTCTAGTGGAAATGAAGGATTCGAAGGAGGCGAAATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGAAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTTCTAAGAAACATGTGGCTGAAGCTGCATTTTTGGTCAAGCAACATATGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACACTGAAAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAATTTCAGATGATTAA
Homology
[Close]
BLAST of CSPI06G01880 vs. TrEMBL
Match: A0A0A0KAE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013320 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 1.5e-105
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1 

Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 181 ADGTARRLAKHYNMRISDD 200
           ADGTARRLAKHYNMRISDD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]
BLAST of CSPI06G01880 vs. TrEMBL
Match: A0A067L601_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20842 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.4e-71
Identity = 136/199 (68.34%), Postives = 166/199 (83.42%), Query Frame = 1 

Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS+  E++A FEEKVKRTVY+DNLS QVTE VL++AL+QFG V+ V F+PNY EP N S
Sbjct: 1   MGSKAQEEYAAFEEKVKRTVYIDNLSPQVTEAVLKSALNQFGIVLRVTFVPNYLEPQNIS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           +CALVEMK++K AK+V++ IAQFPFM+SGMPRPVRARPAE+EMFDDRP +PGRKI  RWL
Sbjct: 61  RCALVEMKEAKHAKAVVSEIAQFPFMVSGMPRPVRARPAEIEMFDDRPRRPGRKIHCRWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           E  DPDFEVAR++KRL++KH AEA+FL++Q +  EEKL KQQ ETLK NY KYE+VD + 
Sbjct: 121 EPGDPDFEVARKLKRLTRKHAAEASFLLQQQLKREEKLHKQQLETLKANYNKYEMVDGIF 180

Query: 181 ADGTARRLAKHYNMRISDD 200
           AD + +RLA HY MRIS D
Sbjct: 181 ADNSVQRLADHYRMRISYD 199

[Close]
BLAST of CSPI06G01880 vs. TrEMBL
Match: D7SWK8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03120 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.1e-70
Identity = 128/199 (64.32%), Postives = 163/199 (81.91%), Query Frame = 1 

Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M S    ++A+FE+KVKR VY+DN+S QVT+ VL+TAL+QFGTVVS+HFIPNY EP    
Sbjct: 61  MESPAQNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIP 120

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           +CALVEM    EA+++I+ +  +PFMMSGMPRP RARPAEVEMFDDRP+KPGR+I  RWL
Sbjct: 121 RCALVEMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWL 180

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           + +DPDFEVA+++K L +KH +EA+F++K  + EEEKLAKQQ E LK NYKKYE++DSV+
Sbjct: 181 DKEDPDFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVL 240

Query: 181 ADGTARRLAKHYNMRISDD 200
           ADG ARRLA+HYN  +SDD
Sbjct: 241 ADGAARRLARHYNFNVSDD 259

[Close]
BLAST of CSPI06G01880 vs. TrEMBL
Match: A0A061EIN5_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_020046 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.0e-69
Identity = 132/199 (66.33%), Postives = 163/199 (81.91%), Query Frame = 1 

Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS +  ++A FEEKV+RTVY+DNLS  VTE V+RTALDQ+GTV SVHFIPNY EP N  
Sbjct: 1   MGSAEQGEYAAFEEKVRRTVYMDNLSPNVTESVVRTALDQYGTVKSVHFIPNYLEPQNIP 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEM+  K+ + VI+ I+QFPFMMSGMPRPVRAR A+VEMF DRP +PGR+I FRWL
Sbjct: 61  QCALVEMETGKQVEVVISTISQFPFMMSGMPRPVRARAAKVEMFSDRPRQPGRRIHFRWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           +  DPDFEVA ++K L+K+H  E A ++K  + +EEKLAKQQ E LK NYKKYE++DS+M
Sbjct: 121 DPADPDFEVANKLKHLAKRHATETAVMLKHQLEKEEKLAKQQGEALKANYKKYEMIDSLM 180

Query: 181 ADGTARRLAKHYNMRISDD 200
           ADGTARRLA+ Y++R+SDD
Sbjct: 181 ADGTARRLARRYDLRVSDD 199

[Close]
BLAST of CSPI06G01880 vs. TrEMBL
Match: V4TX22_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022331mg PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.3e-69
Identity = 130/199 (65.33%), Postives = 167/199 (83.92%), Query Frame = 1 

Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS  + ++A F EKVKRTVY+DNLS QVTEPV+RTALDQFG V +V FIPNYTE  N  
Sbjct: 1   MGSTTEAEYAAFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIP 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
            CALVEM++SK+AK V+T + +FPFMMSGMPRPVRAR AEVEMFDDRP KPG++I FRWL
Sbjct: 61  HCALVEMENSKQAKDVVTSLHEFPFMMSGMPRPVRARAAEVEMFDDRPAKPGQRIQFRWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           + +DPDFEVA+++KRL++KH AEA+F++K+ + +EE+LA QQ+ETLK NY+KYE ++ +M
Sbjct: 121 DPNDPDFEVAQRLKRLARKHAAEASFVLKEQLEQEEQLANQQEETLKQNYRKYETLEGIM 180

Query: 181 ADGTARRLAKHYNMRISDD 200
           +DGTA RL + Y++RI DD
Sbjct: 181 SDGTAYRLGRRYDVRIHDD 199

[Close]
BLAST of CSPI06G01880 vs. TAIR10
Match: AT1G05970.2 (AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 191.0 bits (484), Expect = 6.9e-49
Identity = 92/195 (47.18%), Postives = 140/195 (71.79%), Query Frame = 1 

Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M + ++  +  F E+V+RTVYVD L+   T PV+ +A +QFGTV  V FIPNY  P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
              LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE  MF D+P KPGR + FRW+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           + +DPDF+ AR++KRL++KH AE +F++K+ + E EKL+KQQ ET   ++KK+E++D ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query: 181 ADGTARRLAKHYNMR 196
            DG A++LA  Y+++
Sbjct: 181 YDGVAQKLAGRYDLK 195

[Close]
BLAST of CSPI06G01880 vs. NCBI nr
Match: gi|449441282|ref|XP_004138411.1| (PREDICTED: uncharacterized protein LOC101221287 [Cucumis sativus])

HSP 1 Score: 390.2 bits (1001), Expect = 2.2e-105
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1 

Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 181 ADGTARRLAKHYNMRISDD 200
           ADGTARRLAKHYNMRISDD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]
BLAST of CSPI06G01880 vs. NCBI nr
Match: gi|659081732|ref|XP_008441485.1| (PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo])

HSP 1 Score: 371.7 bits (953), Expect = 8.0e-100
Identity = 187/199 (93.97%), Postives = 195/199 (97.99%), Query Frame = 1 

Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KDEQF+MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVV+VHFIPNYTEPINSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE EMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           ESDDPDFEVARQIKRL+KKHVAEAAFL+KQH+AEEEKLAKQQQETL+GNYKKYEIVDSVM
Sbjct: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180

Query: 181 ADGTARRLAKHYNMRISDD 200
           ADGTARRLAK+YNMR+SDD
Sbjct: 181 ADGTARRLAKNYNMRVSDD 199

[Close]
BLAST of CSPI06G01880 vs. NCBI nr
Match: gi|802554907|ref|XP_012065154.1| (PREDICTED: paraspeckle component 1 [Jatropha curcas])

HSP 1 Score: 277.3 bits (708), Expect = 2.1e-71
Identity = 136/199 (68.34%), Postives = 166/199 (83.42%), Query Frame = 1 

Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS+  E++A FEEKVKRTVY+DNLS QVTE VL++AL+QFG V+ V F+PNY EP N S
Sbjct: 1   MGSKAQEEYAAFEEKVKRTVYIDNLSPQVTEAVLKSALNQFGIVLRVTFVPNYLEPQNIS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           +CALVEMK++K AK+V++ IAQFPFM+SGMPRPVRARPAE+EMFDDRP +PGRKI  RWL
Sbjct: 61  RCALVEMKEAKHAKAVVSEIAQFPFMVSGMPRPVRARPAEIEMFDDRPRRPGRKIHCRWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           E  DPDFEVAR++KRL++KH AEA+FL++Q +  EEKL KQQ ETLK NY KYE+VD + 
Sbjct: 121 EPGDPDFEVARKLKRLTRKHAAEASFLLQQQLKREEKLHKQQLETLKANYNKYEMVDGIF 180

Query: 181 ADGTARRLAKHYNMRISDD 200
           AD + +RLA HY MRIS D
Sbjct: 181 ADNSVQRLADHYRMRISYD 199

[Close]
BLAST of CSPI06G01880 vs. NCBI nr
Match: gi|225438281|ref|XP_002269083.1| (PREDICTED: uncharacterized protein LOC100255901 [Vitis vinifera])

HSP 1 Score: 273.5 bits (698), Expect = 3.0e-70
Identity = 128/199 (64.32%), Postives = 163/199 (81.91%), Query Frame = 1 

Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M S    ++A+FE+KVKR VY+DN+S QVT+ VL+TAL+QFGTVVS+HFIPNY EP    
Sbjct: 1   MESPAQNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIP 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           +CALVEM    EA+++I+ +  +PFMMSGMPRP RARPAEVEMFDDRP+KPGR+I  RWL
Sbjct: 61  RCALVEMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           + +DPDFEVA+++K L +KH +EA+F++K  + EEEKLAKQQ E LK NYKKYE++DSV+
Sbjct: 121 DKEDPDFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVL 180

Query: 181 ADGTARRLAKHYNMRISDD 200
           ADG ARRLA+HYN  +SDD
Sbjct: 181 ADGAARRLARHYNFNVSDD 199

[Close]
BLAST of CSPI06G01880 vs. NCBI nr
Match: gi|296082652|emb|CBI21657.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 273.5 bits (698), Expect = 3.0e-70
Identity = 128/199 (64.32%), Postives = 163/199 (81.91%), Query Frame = 1 

Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M S    ++A+FE+KVKR VY+DN+S QVT+ VL+TAL+QFGTVVS+HFIPNY EP    
Sbjct: 61  MESPAQNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIP 120

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           +CALVEM    EA+++I+ +  +PFMMSGMPRP RARPAEVEMFDDRP+KPGR+I  RWL
Sbjct: 121 RCALVEMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWL 180

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           + +DPDFEVA+++K L +KH +EA+F++K  + EEEKLAKQQ E LK NYKKYE++DSV+
Sbjct: 181 DKEDPDFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVL 240

Query: 181 ADGTARRLAKHYNMRISDD 200
           ADG ARRLA+HYN  +SDD
Sbjct: 241 ADGAARRLARHYNFNVSDD 259

The following BLAST results are available for this feature:
BLAST of CSPI06G01880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G01880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAE7_CUCSA1.5e-105100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013320 PE=4 SV=1[more]
A0A067L601_JATCU1.4e-7168.34Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20842 PE=4 SV=1[more]
D7SWK8_VITVI2.1e-7064.32Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03120 PE=4 SV=... [more]
A0A061EIN5_THECC1.0e-6966.33RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_020046 PE=4 SV=1[more]
V4TX22_9ROSI1.3e-6965.33Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022331mg PE=4 SV=1[more]
BLAST of CSPI06G01880 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G05970.26.9e-4947.18 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CSPI06G01880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441282|ref|XP_004138411.1|2.2e-105100.00PREDICTED: uncharacterized protein LOC101221287 [Cucumis sativus][more]
gi|659081732|ref|XP_008441485.1|8.0e-10093.97PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo][more]
gi|802554907|ref|XP_012065154.1|2.1e-7168.34PREDICTED: paraspeckle component 1 [Jatropha curcas][more]
gi|225438281|ref|XP_002269083.1|3.0e-7064.32PREDICTED: uncharacterized protein LOC100255901 [Vitis vinifera][more]
gi|296082652|emb|CBI21657.3|3.0e-7064.32unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G01880.2CSPI06G01880.2mRNA
CSPI06G01880.1CSPI06G01880.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 20..77
score: 3.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 19..97
score: 3.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 18..101
score: 11
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 14..92
score: 1.5
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 11..95
score: 1.14
NoneNo IPR availableunknownCoilCoilcoord: 144..164
scor
NoneNo IPR availablePANTHERPTHR36309FAMILY NOT NAMEDcoord: 1..199
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G01880Csa6G013320Cucumber (Chinese Long) v2cpicuB314
CSPI06G01880MELO3C008320Melon (DHL92) v3.5.1cpimeB465
CSPI06G01880MELO3C008320.2Melon (DHL92) v3.6.1cpimedB457
CSPI06G01880CsaV3_6G002030Cucumber (Chinese Long) v3cpicucB364
CSPI06G01880Cucsa.136800Cucumber (Gy14) v1cgycpiB198
CSPI06G01880CsGy6G001990Cucumber (Gy14) v2cgybcpiB288
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G01880Silver-seed gourdcarcpiB0024
CSPI06G01880Silver-seed gourdcarcpiB0301
CSPI06G01880Silver-seed gourdcarcpiB0592
CSPI06G01880Silver-seed gourdcarcpiB0709
CSPI06G01880Cucumber (Chinese Long) v3cpicucB348
CSPI06G01880Cucumber (Chinese Long) v3cpicucB357
CSPI06G01880Watermelon (97103) v2cpiwmbB447
CSPI06G01880Watermelon (97103) v2cpiwmbB483
CSPI06G01880Watermelon (97103) v2cpiwmbB508
CSPI06G01880Wax gourdcpiwgoB591
CSPI06G01880Wax gourdcpiwgoB632
CSPI06G01880Wild cucumber (PI 183967)cpicpiB159
CSPI06G01880Cucumber (Gy14) v1cgycpiB184
CSPI06G01880Cucumber (Gy14) v1cgycpiB213
CSPI06G01880Cucurbita maxima (Rimu)cmacpiB314
CSPI06G01880Cucurbita maxima (Rimu)cmacpiB690
CSPI06G01880Cucurbita maxima (Rimu)cmacpiB777
CSPI06G01880Cucurbita maxima (Rimu)cmacpiB783
CSPI06G01880Cucurbita maxima (Rimu)cmacpiB784
CSPI06G01880Cucurbita moschata (Rifu)cmocpiB305
CSPI06G01880Cucurbita moschata (Rifu)cmocpiB682
CSPI06G01880Cucurbita moschata (Rifu)cmocpiB768
CSPI06G01880Cucurbita moschata (Rifu)cmocpiB773
CSPI06G01880Cucumber (Chinese Long) v2cpicuB298
CSPI06G01880Cucumber (Chinese Long) v2cpicuB308
CSPI06G01880Melon (DHL92) v3.5.1cpimeB454
CSPI06G01880Melon (DHL92) v3.5.1cpimeB517
CSPI06G01880Watermelon (Charleston Gray)cpiwcgB450
CSPI06G01880Watermelon (Charleston Gray)cpiwcgB491
CSPI06G01880Watermelon (Charleston Gray)cpiwcgB516
CSPI06G01880Watermelon (97103) v1cpiwmB497
CSPI06G01880Watermelon (97103) v1cpiwmB502
CSPI06G01880Watermelon (97103) v1cpiwmB527
CSPI06G01880Watermelon (97103) v1cpiwmB552
CSPI06G01880Cucurbita pepo (Zucchini)cpecpiB082
CSPI06G01880Cucurbita pepo (Zucchini)cpecpiB199
CSPI06G01880Cucurbita pepo (Zucchini)cpecpiB461
CSPI06G01880Cucurbita pepo (Zucchini)cpecpiB466
CSPI06G01880Bottle gourd (USVL1VR-Ls)cpilsiB437
CSPI06G01880Bottle gourd (USVL1VR-Ls)cpilsiB451
CSPI06G01880Bottle gourd (USVL1VR-Ls)cpilsiB465
CSPI06G01880Melon (DHL92) v3.6.1cpimedB500
CSPI06G01880Cucumber (Gy14) v2cgybcpiB187