CSPI06G01010 (gene) Wild cucumber (PI 183967)

NameCSPI06G01010
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRibosome recycling factor
LocationChr6 : 754347 .. 756937 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAATAGTTAAAAGGTAAAAACGTGGAGCGTTGGGTTTTACGAAAAACCCTAAATAGAAAACATCGAATCGAAGAAATAAGTTTGGTGGTTCCATCAGTTGGAGCATGAACCTCTACTTCAATGGCTATCTTTCTCAAACGTTCCTTCTCCTACAGAAATTTCATCCTTCTCCGTAATTTTGCAAATCAAACCTGTAACTTTTCCTTCTCTGTCAACCATTTCTCCCACTCATGGACCTCCGACACCTCTCCCCGATTTCCTCTTCCTCCTCCAGATTTCATCCGAGAGACTCGTCGGGGTTTTGCTAAAGGCCGAAAATCAAGTAACGATCATGTTGAATATATTATTTATTCTGTCCATGTTTCTCCTGCTCCGGTTTTGAATCGCTTTAATTTTTTTTTTTTTTTTTTTTTTTGTGTTGGGAACTTGGGAAGATGAATCTTCTACAAGTATGCCTGAGGCGTTGCCTGATATTCGACCCACGATTAAAGCAAACGCTAGCTCGCAAATGGAGGCTTCGATAGTTGCATTATCAGGAGAATTAAGCAAGCTTCGAACGGGCAGGGCATCACCTGGTACATTCACTGTCGTATTTATCTAACATTTACACTTCAAGGTTTTATTGTCTTAGCCTGCCCTTGTGATTGCTTACACTATCTCTTACACTGTACTTACAGGAATGCTTGACCACATTATAGTAGAAACTTCAGGTGTGAAGCTGCCGTTGAATCAGATTGCGGCTGTATCGGTCTTGGATTCTAAAACATTGTCAATAAATCCTTATGATCCCAGTGTAATCACCTTACGAAACCCTCTTCTTAAGTTATTTTATCATTTTTCTTCATCATGAGATGTGGTTAATTTCTCATGTTCGTGATTATTTGTGGTAAGGAGAACATGGGCCTGCTTTGATTGGTTTTTTGACTGCTTAAAAACATATATTTAAGTAATTAGAAATTCAATCCAAACATTCCATAGATTGTGCAATTCACTTAGCAGAGCAAATGTTGCATGTAATCTTTAAATTTTCATCTTTGGCAACTTTTGAAATGTATCAAATTGAGTTATGCTTTATTATTGTCATTATCGAAACAAGGTTTTTGTTTCTACTCTACCTGATGTGAGAATTCATAGACACTATCGACATATCTGTTAGTGTTCTTAGCTGAAAAGTGGTATTTGGAATGTCATTCTTATGATAATTACTCTTCTATGCAGACACTAAAGAATTTAGAAACTGCTATAATATCATCTCCTTTAGGTGTAGCACCAAGAGTAGACGGAGAGAGGTTAATTGCAGTCATTCCACCGTAAGTTTTCATGTTCTCTTCCACTGTCTATATGGTTGTTCTTTAAATGTTAAAGCATATTGTATCTGTGAGCTTGACCTTCACACTTTGACAAATATTTTATCCTGATGTTTCTCTTTTTATGCTTGCTATACCAGATTGACCAAAGAACATATCCAGGTATTCTCCAAATCATTTTGCATCTTTCCTTGTTATCCTTTTCTTGGTTCTATAATGCCTATATGGTGGACATTTCTATAGGCTATGTGTAAGCTGGTCACCAAGTGTTGCGAAGATTCCAGACAAAGCATACGACGAGCTCGCCAAAAGGTTGTTTTAGCTACATCTTCACTTCATATAATTAATTTTCAGAAATGTTTGCTAGTAATCATCTAGAGCATAAAAGATATTGGTTCCTGAGGTACCTTGTTTGGTAAGCTCAATAGTTGTAGAAGTCCCAAGAGGCATTATTTTTATGACACTTGCCTCATTCATTACTTTGTATCCAAAACAATCAAGTTTCATGTTAGCTTACAAAATAACCCCAGCTTCACTTCACCTGAATGATCGTGAAGTCATTATGTTAATACCACAAACTCATAGGTGTTAGCAAGTGTTCACAAGTGTTAGCAAGTCTTTCAGATAGTCCTAAGAGCCCTAGGTGTTAGCAAGGGTGTCGTAAAAGGACTTCATTTATTCACATCATTTACAGAACTGAGTTGATTTGTGGTTGATTCGCAGGCCATGGATACAGTTAAAAAGATTAGCTCAAGCTACCCAAAGGATGACATAAAAAGGCTGGAAAAGGAAGTGAGTTGAAGAAGTTGAATCTAATCAAATCATATTTCAATTTTGCTTTTTATTAATTAAATACTGTTACATTTTTGTTTCAGGTTGATGAATTGACTAAGAAGTTTATCAAGTCAGCCGAAGAACTGTGCAAGGGAAAGGAGAAGGAGATCACTGGAGGTTAAAGAAATTTATAGTTCACAATTTTGACAGATGAATCATTCTAATAATTTGTTTTTAAAATTAAGCCGTCCCGTTATAGAGCTTTTTATAATCACAGAGAGGGATGTAACAGTGGATGTTGAAATGGTAATTTCTCGTCAGCAAGCTCTGGTTCAATAGTTACCATTTCAATTTGTTTCAATTTTGATTCTTGTAGTGTAGGAAGCAATGAACTTGAAACCTCTACGAAATGAAATTCTCGGGTGATGTTTTGTAGATTTAACAATTGGAAGATTTTACTGAAACAAGCCGTATATGTGCTTTTTAGTACCTCCCGTTGTTACTTTGAA

mRNA sequence

ATGGCTATCTTTCTCAAACGTTCCTTCTCCTACAGAAATTTCATCCTTCTCCGTAATTTTGCAAATCAAACCTGTAACTTTTCCTTCTCTGTCAACCATTTCTCCCACTCATGGACCTCCGACACCTCTCCCCGATTTCCTCTTCCTCCTCCAGATTTCATCCGAGAGACTCGTCGGGGTTTTGCTAAAGGCCGAAAATCAAATGAATCTTCTACAAGTATGCCTGAGGCGTTGCCTGATATTCGACCCACGATTAAAGCAAACGCTAGCTCGCAAATGGAGGCTTCGATAGTTGCATTATCAGGAGAATTAAGCAAGCTTCGAACGGGCAGGGCATCACCTGGAATGCTTGACCACATTATAGTAGAAACTTCAGGTGTGAAGCTGCCGTTGAATCAGATTGCGGCTGTATCGGTCTTGGATTCTAAAACATTGTCAATAAATCCTTATGATCCCAGTACACTAAAGAATTTAGAAACTGCTATAATATCATCTCCTTTAGGTGTAGCACCAAGAGTAGACGGAGAGAGGTTAATTGCAGTCATTCCACCATTGACCAAAGAACATATCCAGGCTATGTGTAAGCTGGTCACCAAGTGTTGCGAAGATTCCAGACAAAGCATACGACGAGCTCGCCAAAAGGTTGTTTTAGCTACATCTTCACTTCATATAATTAATTTTCAGAAATGTTTGCTAGTAATCATCTAG

Coding sequence (CDS)

ATGGCTATCTTTCTCAAACGTTCCTTCTCCTACAGAAATTTCATCCTTCTCCGTAATTTTGCAAATCAAACCTGTAACTTTTCCTTCTCTGTCAACCATTTCTCCCACTCATGGACCTCCGACACCTCTCCCCGATTTCCTCTTCCTCCTCCAGATTTCATCCGAGAGACTCGTCGGGGTTTTGCTAAAGGCCGAAAATCAAATGAATCTTCTACAAGTATGCCTGAGGCGTTGCCTGATATTCGACCCACGATTAAAGCAAACGCTAGCTCGCAAATGGAGGCTTCGATAGTTGCATTATCAGGAGAATTAAGCAAGCTTCGAACGGGCAGGGCATCACCTGGAATGCTTGACCACATTATAGTAGAAACTTCAGGTGTGAAGCTGCCGTTGAATCAGATTGCGGCTGTATCGGTCTTGGATTCTAAAACATTGTCAATAAATCCTTATGATCCCAGTACACTAAAGAATTTAGAAACTGCTATAATATCATCTCCTTTAGGTGTAGCACCAAGAGTAGACGGAGAGAGGTTAATTGCAGTCATTCCACCATTGACCAAAGAACATATCCAGGCTATGTGTAAGCTGGTCACCAAGTGTTGCGAAGATTCCAGACAAAGCATACGACGAGCTCGCCAAAAGGTTGTTTTAGCTACATCTTCACTTCATATAATTAATTTTCAGAAATGTTTGCTAGTAATCATCTAG
BLAST of CSPI06G01010 vs. Swiss-Prot
Match: RRF_BACSK (Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) GN=frr PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.7e-28
Identity = 69/178 (38.76%), Postives = 116/178 (65.17%), Query Frame = 1

Query: 85  IKANASSQMEASIVALSGELSKLRTGRASPGMLDHIIVETSGVKLPLNQIAAVSVLDSKT 144
           IKA+A ++M+ +I  LS EL+KLR GRA+P +LD + VE  G + PLNQ+A+V+V +++ 
Sbjct: 5   IKADAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARL 64

Query: 145 LSINPYDPSTLKNLETAIISSPLGVAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDS 204
           L I PYD + + ++E AI+ S LG+ P  DG+ +   IPPLT+E  + + +LV+K  E+S
Sbjct: 65  LLITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEES 124

Query: 205 RQSIRRARQKAMDTVKKI--SSSYPKDDIKRLEKEVDELTKKFIKSAEELCKGKEKEI 261
           + ++R  R+ A D +KK+       +D+++    ++ +LT  ++   +E  K KE+EI
Sbjct: 125 KVAVRNIRRDANDELKKLQKDGEMTEDELRSATDDIQKLTDTYVAKIDEKAKQKEQEI 182

BLAST of CSPI06G01010 vs. Swiss-Prot
Match: RRF_ALKOO (Ribosome-recycling factor OS=Alkaliphilus oremlandii (strain OhILAs) GN=frr PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.7e-28
Identity = 71/178 (39.89%), Postives = 110/178 (61.80%), Query Frame = 1

Query: 85  IKANASSQMEASIVALSGELSKLRTGRASPGMLDHIIVETSGVKLPLNQIAAVSVLDSKT 144
           I  N   +M  +I AL  EL+ +R GRA+P MLD I+VE  G   P+ QIAA++  + + 
Sbjct: 5   IHKNLEEKMNKTINALKDELASIRAGRANPAMLDRIVVEYYGSPTPIKQIAAITAPEPRI 64

Query: 145 LSINPYDPSTLKNLETAIISSPLGVAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDS 204
           +SI PYD S L ++E AI+ S LGV P  DG+ +  ++P LT+E  + + K+  K  ED+
Sbjct: 65  ISIQPYDGSALSSIEKAILQSDLGVNPSNDGKLIRIIVPQLTEERRKELTKVAKKTSEDA 124

Query: 205 RQSIRRARQKAMDTVKKI--SSSYPKDDIKRLEKEVDELTKKFIKSAEELCKGKEKEI 261
           +  +R  R+ A D +KK+   +   +D++K  + EV ++T KFIK  +EL + KEK+I
Sbjct: 125 KVVLRNERRNANDRLKKMQKDNEITEDELKTAQDEVQKITDKFIKMVDELTEKKEKDI 182

BLAST of CSPI06G01010 vs. Swiss-Prot
Match: RRF_BACHD (Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=frr PE=3 SV=3)

HSP 1 Score: 125.9 bits (315), Expect = 6.3e-28
Identity = 71/175 (40.57%), Postives = 111/175 (63.43%), Query Frame = 1

Query: 88  NASSQMEASIVALSGELSKLRTGRASPGMLDHIIVETSGVKLPLNQIAAVSVLDSKTLSI 147
           +A  +M  +  AL  EL+KLR GRA+P MLD I VE  G + PLNQ+A +SV +++ L I
Sbjct: 8   DAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVI 67

Query: 148 NPYDPSTLKNLETAIISSPLGVAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQS 207
            P+D S++ ++E AI  S LG+ P  DG  +   IPPLT+E  + + KLV K  E+++ +
Sbjct: 68  QPFDKSSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAKVA 127

Query: 208 IRRARQKAMDTVKK--ISSSYPKDDIKRLEKEVDELTKKFIKSAEELCKGKEKEI 261
           +R  R+ A D +KK        +DD++R+ ++V +LT K+I+  ++  + KEKEI
Sbjct: 128 VRNIRRDANDDLKKRQKDGELTEDDLRRVTEDVQKLTDKYIEQIDQKAEAKEKEI 182

BLAST of CSPI06G01010 vs. Swiss-Prot
Match: RRF_GEOTN (Ribosome-recycling factor OS=Geobacillus thermodenitrificans (strain NG80-2) GN=frr PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.1e-27
Identity = 68/174 (39.08%), Postives = 110/174 (63.22%), Query Frame = 1

Query: 89  ASSQMEASIVALSGELSKLRTGRASPGMLDHIIVETSGVKLPLNQIAAVSVLDSKTLSIN 148
           A  +M+ ++ A S EL+ +R GRA+ G+L+ + V+  GV  P+NQ+A +SV +++ L I 
Sbjct: 9   AKEKMDKAVQAFSRELATVRAGRANAGLLEKVTVDYYGVATPINQLATISVPEARMLVIQ 68

Query: 149 PYDPSTLKNLETAIISSPLGVAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSI 208
           PYD S +K +E AI++S LGV P  DG  +  VIPPLT+E  + + KLV K  E+++ ++
Sbjct: 69  PYDKSVIKEMEKAILASDLGVTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEEAKVAV 128

Query: 209 RRARQKAMDTVKKI--SSSYPKDDIKRLEKEVDELTKKFIKSAEELCKGKEKEI 261
           R  R+ A D +KK+  +S   +D+++    EV +LT   I   + + K KEKE+
Sbjct: 129 RNIRRDANDELKKLEKNSEITEDELRSYTDEVQKLTDSHIAKIDAITKEKEKEV 182

BLAST of CSPI06G01010 vs. Swiss-Prot
Match: RRF_DESVM (Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=frr PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.4e-27
Identity = 69/179 (38.55%), Postives = 115/179 (64.25%), Query Frame = 1

Query: 84  TIKANASSQMEASIVALSGELSKLRTGRASPGMLDHIIVETSGVKLPLNQIAAVSVLDSK 143
           +I  +A  +ME ++ +L  E +KLRTGRAS  ++D+I V+  G   P++Q+A+VSV DS+
Sbjct: 5   SILLDAEERMEKALGSLDREFAKLRTGRASTSLVDNIKVDYYGTPTPISQLASVSVPDSR 64

Query: 144 TLSINPYDPSTLKNLETAIISSPLGVAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCED 203
           TL+I P+D S  + +E AI+ S LG+ P  DG+ +   IPPLT+E  + + K+  K  E+
Sbjct: 65  TLTIQPWDRSAFQLVEKAIMKSDLGLNPVNDGKIIRISIPPLTEERRKDLVKVARKYTEE 124

Query: 204 SRQSIRRARQKAMDTVKKI--SSSYPKDDIKRLEKEVDELTKKFIKSAEELCKGKEKEI 261
           ++ ++R  R+ A D +KK+       +DD+++   +V +LT +F+  ++E C  KEKEI
Sbjct: 125 AKVAVRNVRRDANDALKKLEKGKEISEDDVRKSTDDVQKLTDRFVAKSDEKCTAKEKEI 183

BLAST of CSPI06G01010 vs. TrEMBL
Match: A0A0A0KA50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008020 PE=4 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 4.7e-139
Identity = 262/263 (99.62%), Postives = 262/263 (99.62%), Query Frame = 1

Query: 1   MAIFLKRSFSYRNFILLRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPPDFIRETRRG 60
           MAIFLKRSFSYRNFILLRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPPDFIRETRRG
Sbjct: 1   MAIFLKRSFSYRNFILLRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPPDFIRETRRG 60

Query: 61  FAKGRKSNESSTSMPEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGMLDHI 120
           FAKGRKSNESSTSM EALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGMLDHI 120

Query: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGERLIA 180
           IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGERLIA
Sbjct: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKEVDE 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKEVDE 240

Query: 241 LTKKFIKSAEELCKGKEKEITGG 264
           LTKKFIKSAEELCKGKEKEITGG
Sbjct: 241 LTKKFIKSAEELCKGKEKEITGG 263

BLAST of CSPI06G01010 vs. TrEMBL
Match: A0A0G4AMA2_9ROSI (Ribosome recycling factor OS=Francoa sonchifolia PE=2 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.4e-82
Identity = 170/265 (64.15%), Postives = 216/265 (81.51%), Query Frame = 1

Query: 1   MAIFLKRSFSYRNFIL-LRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPPDFIRETRR 60
           MA++L R+FSYRN +  +R  + QT  FS +V   S  ++SD      + P DF+ ++RR
Sbjct: 1   MAVYLGRAFSYRNALCSIRRSSFQTRQFSRAVCSAS-LFSSDARTLHSVAPIDFLTQSRR 60

Query: 61  GFAKGRKS-NESSTSMPEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGMLD 120
           GFAKG+KS ++S+TS  E +PDI PT+KANA+SQMEA+I +LS ELSKLRTGRAS G+LD
Sbjct: 61  GFAKGKKSRDDSATSTVEVVPDIGPTLKANAASQMEAAIDSLSRELSKLRTGRASAGILD 120

Query: 121 HIIVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGERL 180
           HIIVE+ G+K+PLN++A VSVLDSKTLS+NPYDPS +K LE+AI+SSPLG+ P+VDG+RL
Sbjct: 121 HIIVESGGIKMPLNRLAVVSVLDSKTLSVNPYDPSAIKELESAIVSSPLGLNPKVDGQRL 180

Query: 181 IAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKEV 240
           IA IP LTKEHIQAMCK+V K  ED +QSIRRARQKA+DT+KK  SS+PKD+ K+LEKE+
Sbjct: 181 IAAIPALTKEHIQAMCKVVAKSSEDVKQSIRRARQKALDTMKKAGSSFPKDNAKKLEKEI 240

Query: 241 DELTKKFIKSAEELCKGKEKEITGG 264
           DELTKKF+KSAE++CK KEKEI  G
Sbjct: 241 DELTKKFVKSAEDMCKAKEKEINEG 264

BLAST of CSPI06G01010 vs. TrEMBL
Match: I1M0P2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G194000 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.4e-82
Identity = 176/266 (66.17%), Postives = 210/266 (78.95%), Query Frame = 1

Query: 1   MAIFLKRSFSYRNFILLRNFAN-QTCNFSFSVNHFSHSWTSDTSPRFPLPP-PDFIRETR 60
           M+ +++R+FSYRN + LRN    + C+       +S     D++    LP  P+F+ E+R
Sbjct: 2   MSGYVRRAFSYRNMLWLRNSGVVRGCDV------WSPIQMCDSNRVLTLPATPNFVAESR 61

Query: 61  RGFAKGRKS-NESSTSMPEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGML 120
           R FAKGRKS +E   S  E  P+  PTIKANA SQMEA++ ALS ELSKLRTGRASPGML
Sbjct: 62  RAFAKGRKSKDEGGASTIEVPPNAGPTIKANAVSQMEAAMAALSTELSKLRTGRASPGML 121

Query: 121 DHIIVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGER 180
           DHIIVETSG+K+PLN++A VSVLD KTLS+NPYDP TLK LE AI+SSPLG+ P+ DGER
Sbjct: 122 DHIIVETSGLKMPLNRLAVVSVLDPKTLSVNPYDPETLKQLENAIVSSPLGLNPKSDGER 181

Query: 181 LIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKE 240
           LIAVIPPLTKEH+QAM KLV K CED+RQSIRRARQKAMD +KK+ SS PKDDIKRLEKE
Sbjct: 182 LIAVIPPLTKEHMQAMTKLVAKSCEDARQSIRRARQKAMDAIKKLYSSLPKDDIKRLEKE 241

Query: 241 VDELTKKFIKSAEELCKGKEKEITGG 264
           VD+LTKKFIKSAE++CK KEKEI+ G
Sbjct: 242 VDDLTKKFIKSAEDICKAKEKEISQG 261

BLAST of CSPI06G01010 vs. TrEMBL
Match: A0A0B2S0L9_GLYSO (Ribosome-recycling factor OS=Glycine soja GN=glysoja_007400 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.4e-82
Identity = 176/266 (66.17%), Postives = 210/266 (78.95%), Query Frame = 1

Query: 1   MAIFLKRSFSYRNFILLRNFAN-QTCNFSFSVNHFSHSWTSDTSPRFPLPP-PDFIRETR 60
           M+ +++R+FSYRN + LRN    + C+       +S     D++    LP  P+F+ E+R
Sbjct: 2   MSGYVRRAFSYRNMLWLRNSGVVRGCDV------WSPIQMCDSNRVLTLPATPNFVAESR 61

Query: 61  RGFAKGRKS-NESSTSMPEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGML 120
           R FAKGRKS +E   S  E  P+  PTIKANA SQMEA++ ALS ELSKLRTGRASPGML
Sbjct: 62  RAFAKGRKSKDEGGASTIEVPPNAGPTIKANAVSQMEAAMAALSTELSKLRTGRASPGML 121

Query: 121 DHIIVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGER 180
           DHIIVETSG+K+PLN++A VSVLD KTLS+NPYDP TLK LE AI+SSPLG+ P+ DGER
Sbjct: 122 DHIIVETSGLKMPLNRLAVVSVLDPKTLSVNPYDPETLKQLENAIVSSPLGLNPKSDGER 181

Query: 181 LIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKE 240
           LIAVIPPLTKEH+QAM KLV K CED+RQSIRRARQKAMD +KK+ SS PKDDIKRLEKE
Sbjct: 182 LIAVIPPLTKEHMQAMTKLVAKSCEDARQSIRRARQKAMDAIKKLYSSLPKDDIKRLEKE 241

Query: 241 VDELTKKFIKSAEELCKGKEKEITGG 264
           VD+LTKKFIKSAE++CK KEKEI+ G
Sbjct: 242 VDDLTKKFIKSAEDICKAKEKEISQG 261

BLAST of CSPI06G01010 vs. TrEMBL
Match: M5XD83_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010230mg PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.1e-82
Identity = 171/264 (64.77%), Postives = 208/264 (78.79%), Query Frame = 1

Query: 1   MAIFLKRSFSYRNFILLRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPP-DFIRETRR 60
           MAIFL+R+ S+RN +LLR+ A         V      + S+   R       +F++E+RR
Sbjct: 1   MAIFLRRALSFRNVLLLRSSA--------IVGRELFQYNSEAPQRILSHSALEFVKESRR 60

Query: 61  GFAKGRKSN--ESSTSMPEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGML 120
           GFAKGR  +  +S+    E LP++ PTIKAN +SQMEA+I ALS ELSKLRTGRASPGML
Sbjct: 61  GFAKGRNKSKDDSAAGTIEVLPNMGPTIKANTTSQMEAAITALSAELSKLRTGRASPGML 120

Query: 121 DHIIVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGER 180
           DHIIVET GVKLPL+QIA VSVLDSKTLSINP+DP+ L+ LETAI+ S LG+ P+VDG+R
Sbjct: 121 DHIIVETGGVKLPLSQIAVVSVLDSKTLSINPFDPNALQKLETAIVESALGLNPKVDGDR 180

Query: 181 LIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKE 240
           LIA IPPLTKEH+QA+CK+VTK CED R SIRRARQKAMDT+KK+ S YPKDD+KRLEKE
Sbjct: 181 LIAAIPPLTKEHVQAVCKVVTKSCEDGRLSIRRARQKAMDTIKKLYSRYPKDDLKRLEKE 240

Query: 241 VDELTKKFIKSAEELCKGKEKEIT 262
           V+ELTKKF+K+AE+LCK KEKEI+
Sbjct: 241 VEELTKKFVKTAEDLCKAKEKEIS 256

BLAST of CSPI06G01010 vs. TAIR10
Match: AT3G01800.1 (AT3G01800.1 Ribosome recycling factor)

HSP 1 Score: 306.2 bits (783), Expect = 1.9e-83
Identity = 166/265 (62.64%), Postives = 211/265 (79.62%), Query Frame = 1

Query: 1   MAIFLKRSFSYRN---FILLRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPPDFIRET 60
           MA+F++R+ S RN   F+   +   Q+ +FSF ++  +         +F L  PDF+R++
Sbjct: 2   MAMFVRRALSSRNAIGFLRRSSVVVQSRDFSF-ISSPNLMMMGGRDLQFDLSMPDFLRDS 61

Query: 61  RRGFAKGRKS-NESSTSMPEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGM 120
           RRGFAKG+KS ++S T M +A PDI PT+KA ASSQMEA+I ALS +L+KLRTGRA+PGM
Sbjct: 62  RRGFAKGKKSKDDSGTGMVDAAPDIGPTVKAAASSQMEAAIDALSRDLTKLRTGRAAPGM 121

Query: 121 LDHIIVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGE 180
           LDHI+VET GVK+PLN +A VSVLD KTLS+NPYDP T+K LE AI++SPLG+ P++DG+
Sbjct: 122 LDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDPDTVKELEKAIVASPLGLNPKLDGQ 181

Query: 181 RLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEK 240
           RL+A IP LTKEHIQAMCK+VTK  E  +QSIRRARQKA+DT+KK  SS PKD++KRLEK
Sbjct: 182 RLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRARQKALDTIKKAGSSLPKDEVKRLEK 241

Query: 241 EVDELTKKFIKSAEELCKGKEKEIT 262
           EVDELTKKF+KSAE++CK KEKEIT
Sbjct: 242 EVDELTKKFVKSAEDMCKSKEKEIT 265

BLAST of CSPI06G01010 vs. TAIR10
Match: AT3G63190.1 (AT3G63190.1 ribosome recycling factor, chloroplast precursor)

HSP 1 Score: 109.4 bits (272), Expect = 3.5e-24
Identity = 64/181 (35.36%), Postives = 105/181 (58.01%), Query Frame = 1

Query: 82  RPTIKANASSQMEASIVALSGELSKLRTGRASPGMLDHIIVETSGVKLPLNQIAAVSVLD 141
           +  I+ +  S+ME +I  L    + +RTGR++  MLD I VE  G  + L  IA +S  D
Sbjct: 92  KSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPD 151

Query: 142 SKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCC 201
             +L + PYD S+LK +E AI++S LGV P  DG+ +   +PPLT +  + + K+V K  
Sbjct: 152 GSSLLLQPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQS 211

Query: 202 EDSRQSIRRARQKAMDTVKKI--SSSYPKDDIKRLEKEVDELTKKFIKSAEELCKGKEKE 261
           E+ + ++R  R+ A+ +  K+       +D++K L  ++ +L   ++K  EEL K KEKE
Sbjct: 212 EEGKVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKE 271

BLAST of CSPI06G01010 vs. NCBI nr
Match: gi|778709279|ref|XP_004138478.2| (PREDICTED: ribosome-recycling factor, chloroplastic [Cucumis sativus])

HSP 1 Score: 501.9 bits (1291), Expect = 6.8e-139
Identity = 262/263 (99.62%), Postives = 262/263 (99.62%), Query Frame = 1

Query: 1   MAIFLKRSFSYRNFILLRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPPDFIRETRRG 60
           MAIFLKRSFSYRNFILLRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPPDFIRETRRG
Sbjct: 1   MAIFLKRSFSYRNFILLRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPPDFIRETRRG 60

Query: 61  FAKGRKSNESSTSMPEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGMLDHI 120
           FAKGRKSNESSTSM EALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGMLDHI 120

Query: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGERLIA 180
           IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGERLIA
Sbjct: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKEVDE 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKEVDE 240

Query: 241 LTKKFIKSAEELCKGKEKEITGG 264
           LTKKFIKSAEELCKGKEKEITGG
Sbjct: 241 LTKKFIKSAEELCKGKEKEITGG 263

BLAST of CSPI06G01010 vs. NCBI nr
Match: gi|659081500|ref|XP_008441363.1| (PREDICTED: ribosome-recycling factor, chloroplastic [Cucumis melo])

HSP 1 Score: 468.8 bits (1205), Expect = 6.4e-129
Identity = 246/263 (93.54%), Postives = 255/263 (96.96%), Query Frame = 1

Query: 1   MAIFLKRSFSYRNFILLRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPPDFIRETRRG 60
           MA+FLKRSFSYRNFI+LRNFANQTCNFSFS+NHFS+SWTSDTS  F LPP DFIRE+RRG
Sbjct: 1   MAMFLKRSFSYRNFIILRNFANQTCNFSFSLNHFSNSWTSDTSAGFALPPSDFIRESRRG 60

Query: 61  FAKGRKSNESSTSMPEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGMLDHI 120
           FAKGRKSNESSTS+ EAL DIRPTIK+NASSQMEASIVALSGELSKLRTGRAS GMLDHI
Sbjct: 61  FAKGRKSNESSTSIAEALTDIRPTIKSNASSQMEASIVALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGERLIA 180
           IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLE+AIISSPLGVAPRVDGERLIA
Sbjct: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLESAIISSPLGVAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKEVDE 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDD+KRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDMKRLEKEVDE 240

Query: 241 LTKKFIKSAEELCKGKEKEITGG 264
           LTKKFIKSAEELCK KEKEITGG
Sbjct: 241 LTKKFIKSAEELCKAKEKEITGG 263

BLAST of CSPI06G01010 vs. NCBI nr
Match: gi|694392399|ref|XP_009371676.1| (PREDICTED: ribosome-recycling factor, chloroplastic [Pyrus x bretschneideri])

HSP 1 Score: 323.6 bits (828), Expect = 3.3e-85
Identity = 175/266 (65.79%), Postives = 213/266 (80.08%), Query Frame = 1

Query: 1   MAIFLKRSFSYRNFILLRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPPDFIRETRRG 60
           MAIFL+R+ S+RN +LLR+ A  +       +   H   S       LP  +F+RE+RRG
Sbjct: 1   MAIFLRRALSFRNVLLLRSSALLSRELRQCNSAPPHRVLS-------LPALEFVRESRRG 60

Query: 61  FAKGR---KSNESSTSMPEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGML 120
           FAKGR   K +ES+ S  E LP++ PTIKANA+S MEA+I AL+ ELSKLRTGRASPGML
Sbjct: 61  FAKGRNKKKEDESAASTVEILPNMGPTIKANATSHMEAAIAALTAELSKLRTGRASPGML 120

Query: 121 DHIIVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGER 180
           DHIIVET GVKLPL+QIAAVSV+DSKTLSINP+DP+ L NLETAI+ SPLG+ P+VDG+R
Sbjct: 121 DHIIVETGGVKLPLHQIAAVSVIDSKTLSINPFDPTALSNLETAIVESPLGLNPKVDGDR 180

Query: 181 LIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKE 240
           LIA IPPLTKEH+QA+CK+VTK  ED +QSIRR RQKAMDT+KK++ +YPKDD+KR EKE
Sbjct: 181 LIAAIPPLTKEHVQAICKVVTKSAEDGKQSIRRGRQKAMDTIKKLTKNYPKDDLKRWEKE 240

Query: 241 VDELTKKFIKSAEELCKGKEKEITGG 264
           VDELTKKF+K+AE+LCK KEKEI+ G
Sbjct: 241 VDELTKKFVKTAEDLCKAKEKEISSG 259

BLAST of CSPI06G01010 vs. NCBI nr
Match: gi|658052756|ref|XP_008362112.1| (PREDICTED: ribosome-recycling factor, chloroplastic-like [Malus domestica])

HSP 1 Score: 322.4 bits (825), Expect = 7.4e-85
Identity = 174/266 (65.41%), Postives = 212/266 (79.70%), Query Frame = 1

Query: 1   MAIFLKRSFSYRNFILLRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPPDFIRETRRG 60
           MAIFL+R+ S+RN +LLR+ A  +       +   H   S       LP  +F+RE+RRG
Sbjct: 1   MAIFLRRTLSFRNVLLLRSSALLSRELRQCNSASPHRVLS-------LPALEFVRESRRG 60

Query: 61  FAKGR---KSNESSTSMPEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGML 120
           FAKGR   K +ES+ S  E LP++ PTIKANA+S MEA+I AL+ ELSKLRTGRASPGML
Sbjct: 61  FAKGRNKKKEDESAASTVEILPNMGPTIKANATSHMEAAIAALTAELSKLRTGRASPGML 120

Query: 121 DHIIVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGER 180
           DHIIVET GVKLPL+QIAAVSV+DSKTLSINP+DP+ L NLETAI+ SPLG+ P+VDG+R
Sbjct: 121 DHIIVETGGVKLPLHQIAAVSVIDSKTLSINPFDPTALSNLETAIVESPLGLNPKVDGDR 180

Query: 181 LIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKE 240
           LI  IPPLTKEH+QA+CK+VTK  ED +QSIRR RQKAMDT+KK++ +YPKDD+KR EKE
Sbjct: 181 LIXAIPPLTKEHVQAICKVVTKSAEDGKQSIRRGRQKAMDTIKKLTKNYPKDDLKRWEKE 240

Query: 241 VDELTKKFIKSAEELCKGKEKEITGG 264
           VDELTKKF+K+AE+LCK KEKEI+ G
Sbjct: 241 VDELTKKFVKTAEDLCKAKEKEISSG 259

BLAST of CSPI06G01010 vs. NCBI nr
Match: gi|836713587|gb|AKM76780.1| (ribosome recycling factor [Francoa sonchifolia])

HSP 1 Score: 314.3 bits (804), Expect = 2.0e-82
Identity = 170/265 (64.15%), Postives = 216/265 (81.51%), Query Frame = 1

Query: 1   MAIFLKRSFSYRNFIL-LRNFANQTCNFSFSVNHFSHSWTSDTSPRFPLPPPDFIRETRR 60
           MA++L R+FSYRN +  +R  + QT  FS +V   S  ++SD      + P DF+ ++RR
Sbjct: 1   MAVYLGRAFSYRNALCSIRRSSFQTRQFSRAVCSAS-LFSSDARTLHSVAPIDFLTQSRR 60

Query: 61  GFAKGRKS-NESSTSMPEALPDIRPTIKANASSQMEASIVALSGELSKLRTGRASPGMLD 120
           GFAKG+KS ++S+TS  E +PDI PT+KANA+SQMEA+I +LS ELSKLRTGRAS G+LD
Sbjct: 61  GFAKGKKSRDDSATSTVEVVPDIGPTLKANAASQMEAAIDSLSRELSKLRTGRASAGILD 120

Query: 121 HIIVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLETAIISSPLGVAPRVDGERL 180
           HIIVE+ G+K+PLN++A VSVLDSKTLS+NPYDPS +K LE+AI+SSPLG+ P+VDG+RL
Sbjct: 121 HIIVESGGIKMPLNRLAVVSVLDSKTLSVNPYDPSAIKELESAIVSSPLGLNPKVDGQRL 180

Query: 181 IAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDIKRLEKEV 240
           IA IP LTKEHIQAMCK+V K  ED +QSIRRARQKA+DT+KK  SS+PKD+ K+LEKE+
Sbjct: 181 IAAIPALTKEHIQAMCKVVAKSSEDVKQSIRRARQKALDTMKKAGSSFPKDNAKKLEKEI 240

Query: 241 DELTKKFIKSAEELCKGKEKEITGG 264
           DELTKKF+KSAE++CK KEKEI  G
Sbjct: 241 DELTKKFVKSAEDMCKAKEKEINEG 264

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RRF_BACSK1.7e-2838.76Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) GN=frr PE=3 SV=1[more]
RRF_ALKOO3.7e-2839.89Ribosome-recycling factor OS=Alkaliphilus oremlandii (strain OhILAs) GN=frr PE=3... [more]
RRF_BACHD6.3e-2840.57Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 1819... [more]
RRF_GEOTN4.1e-2739.08Ribosome-recycling factor OS=Geobacillus thermodenitrificans (strain NG80-2) GN=... [more]
RRF_DESVM5.4e-2738.55Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 196... [more]
Match NameE-valueIdentityDescription
A0A0A0KA50_CUCSA4.7e-13999.62Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008020 PE=4 SV=1[more]
A0A0G4AMA2_9ROSI1.4e-8264.15Ribosome recycling factor OS=Francoa sonchifolia PE=2 SV=1[more]
I1M0P2_SOYBN2.4e-8266.17Uncharacterized protein OS=Glycine max GN=GLYMA_13G194000 PE=4 SV=1[more]
A0A0B2S0L9_GLYSO2.4e-8266.17Ribosome-recycling factor OS=Glycine soja GN=glysoja_007400 PE=4 SV=1[more]
M5XD83_PRUPE3.1e-8264.77Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010230mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G01800.11.9e-8362.64 Ribosome recycling factor[more]
AT3G63190.13.5e-2435.36 ribosome recycling factor, chloroplast precursor[more]
Match NameE-valueIdentityDescription
gi|778709279|ref|XP_004138478.2|6.8e-13999.62PREDICTED: ribosome-recycling factor, chloroplastic [Cucumis sativus][more]
gi|659081500|ref|XP_008441363.1|6.4e-12993.54PREDICTED: ribosome-recycling factor, chloroplastic [Cucumis melo][more]
gi|694392399|ref|XP_009371676.1|3.3e-8565.79PREDICTED: ribosome-recycling factor, chloroplastic [Pyrus x bretschneideri][more]
gi|658052756|ref|XP_008362112.1|7.4e-8565.41PREDICTED: ribosome-recycling factor, chloroplastic-like [Malus domestica][more]
gi|836713587|gb|AKM76780.1|2.0e-8264.15ribosome recycling factor [Francoa sonchifolia][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002661Ribosome_recyc_fac
IPR023584Ribosome_recyc_fac_dom
IPR002661Ribosome_recyc_fac
IPR023584Ribosome_recyc_fac_dom
IPR024946Arginine repressor C-terminal-like domain
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044699 single-organism process
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G01010.2CSPI06G01010.2mRNA
CSPI06G01010.1CSPI06G01010.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 46..216
score: 4.1
IPR023584Ribosome recycling factor domainPFAMPF01765RRFcoord: 102..215
score: 7.2
IPR023584Ribosome recycling factor domainunknownSSF55194Ribosome recycling factor, RRFcoord: 85..216
score: 7.46
IPR024946Arginine repressor C-terminal-like domainGENE3DG3DSA:3.30.1360.40coord: 110..189
score: 1.7