CSPI06G00340 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G00340
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 281533 .. 282325 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACTCTTTCTTCATCACCAACAACCCCTCAATCAAATCTTCCTTCAGTTTCGCAATCCAAGTAAGTCTATACACACACTCAAAGACTTTCATTATTCAAGAATTTGTTTCATTTCTTGCAATCAAGTTTCGAGTTTGCATTTAAATTTCCTTAGGGGTGGTTGATGATCAAGATGTACTTTTTCATGGATTTCCATTGTCACCTTCAAGAGAGGAAGATGTAGGGGAAATTGATTATGGAATCTTTTTCTCAATTGACTCACTTGTGCTTAGATTCATTGCAACAGAGTTAGATGATTACGATGGTAATTAATTAATTTTAGAAAAAACAATCTTTTCTTTTCTCTCTTTAATTAAGTCGTTATTAACTTCTAAAATATATTCTCTTGTGGTAATTAATTTAGCATTGGTTACTCTAACGAATTCAGAAGTCAAATTCAGTGTTAATGATAAGGAGATAAGTCTTTACAAAGAGGTATATATATAATACAATTTAATTGAATTCTTTTTGCAATAATTATTTAAGTATTTTATAATAATGTGTGTGTGTTGTGTGTAGGTAGATGAATGTATAATTGGAGGGGTTGCAGATGAAGAAGAAAGTCGATTCTTTGTGTACCTAAATCCCAAAATACTTTTTAGAGATTTGGCAAATAAATCAGAAAGGATATGGATGTTCAAGTCTCCTAATTCCTATAGTATAATTGTTGCTCCTATTGGATTGTATGCCCAATTTTGTGTCTATTTTCCCCAACTAGAGGAAAAATCCAAGAGGCAAAGGATATGTTGA

mRNA sequence

ATGATACTCTTTCTTCATCACCAACAACCCCTCAATCAAATCTTCCTTCAGTTTCGCAATCCAAGGGTGGTTGATGATCAAGATGTACTTTTTCATGGATTTCCATTGTCACCTTCAAGAGAGGAAGATGTAGGGGAAATTGATTATGGAATCTTTTTCTCAATTGACTCACTTGTGCTTAGATTCATTGCAACAGAGTTAGATGATTACGATGCATTGGTTACTCTAACGAATTCAGAAGTCAAATTCAGTGTTAATGATAAGGAGATAAGTCTTTACAAAGAGGTAGATGAATGTATAATTGGAGGGGTTGCAGATGAAGAAGAAAGTCGATTCTTTGTGTACCTAAATCCCAAAATACTTTTTAGAGATTTGGCAAATAAATCAGAAAGGATATGGATGTTCAAGTCTCCTAATTCCTATAGTATAATTGTTGCTCCTATTGGATTGTATGCCCAATTTTGTGTCTATTTTCCCCAACTAGAGGAAAAATCCAAGAGGCAAAGGATATGTTGA

Coding sequence (CDS)

ATGATACTCTTTCTTCATCACCAACAACCCCTCAATCAAATCTTCCTTCAGTTTCGCAATCCAAGGGTGGTTGATGATCAAGATGTACTTTTTCATGGATTTCCATTGTCACCTTCAAGAGAGGAAGATGTAGGGGAAATTGATTATGGAATCTTTTTCTCAATTGACTCACTTGTGCTTAGATTCATTGCAACAGAGTTAGATGATTACGATGCATTGGTTACTCTAACGAATTCAGAAGTCAAATTCAGTGTTAATGATAAGGAGATAAGTCTTTACAAAGAGGTAGATGAATGTATAATTGGAGGGGTTGCAGATGAAGAAGAAAGTCGATTCTTTGTGTACCTAAATCCCAAAATACTTTTTAGAGATTTGGCAAATAAATCAGAAAGGATATGGATGTTCAAGTCTCCTAATTCCTATAGTATAATTGTTGCTCCTATTGGATTGTATGCCCAATTTTGTGTCTATTTTCCCCAACTAGAGGAAAAATCCAAGAGGCAAAGGATATGTTGA
Homology
[Close]
BLAST of CSPI06G00340 vs. TrEMBL
Match: A0A0A0KCY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002350 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 5.7e-93
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1 

Query: 1   MILFLHHQQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVL 60
           MILFLHHQQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVL
Sbjct: 1   MILFLHHQQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVL 60

Query: 61  RFIATELDDYDALVTLTNSEVKFSVNDKEISLYKEVDECIIGGVADEEESRFFVYLNPKI 120
           RFIATELDDYDALVTLTNSEVKFSVNDKEISLYKEVDECIIGGVADEEESRFFVYLNPKI
Sbjct: 61  RFIATELDDYDALVTLTNSEVKFSVNDKEISLYKEVDECIIGGVADEEESRFFVYLNPKI 120

Query: 121 LFRDLANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFPQLEEKSKRQRIC 172
           LFRDLANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFPQLEEKSKRQRIC
Sbjct: 121 LFRDLANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFPQLEEKSKRQRIC 171

[Close]
BLAST of CSPI06G00340 vs. TrEMBL
Match: A0A0A0K9W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.9e-20
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 1 

Query: 45  GEIDYGIFFSIDSLVLRFIATELDDYDALVTLTNSEVKFSVNDKEISLYKEVDECIIGGV 104
           G+I+Y  F SIDS   R IA+EL+     VT TNS V F   +KEI+  KE ++C+IGGV
Sbjct: 131 GDIEYTTFVSIDSRDFRRIASELNSRSVSVTFTNSRVNFFNKNKEITFSKEENQCVIGGV 190

Query: 105 ADEEESRFFVYLNPKILFRDLANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFP 160
            + EE RF + ++P + F DL+++S+R+W     +   I++ P+GL+ QF VYFP
Sbjct: 191 EEGEEFRFIITVHPLVFFLDLSSQSKRVWFLMQRDFSCIMILPLGLWQQFWVYFP 245

[Close]
BLAST of CSPI06G00340 vs. TrEMBL
Match: A0A0A0LLD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G154090 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.3e-19
Identity = 61/160 (38.12%), Postives = 91/160 (56.88%), Query Frame = 1 

Query: 1   MILFLHHQQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVL 60
           M LFL     L ++ ++F +PR   ++  L   F +  +  ED G +D+ IF SIDSL  
Sbjct: 1   MSLFLFKN--LERLLIKFYSPR---EELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQF 60

Query: 61  RFIATELDDYDALVTLTNSEVKFSVNDKEISLYKEVDECIIGGVADEEESRFFVYLNPKI 120
           R I  E  DY   VT T+S V+F    KEI   KE  ECII GV       F + + P  
Sbjct: 61  RHIIQECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECIIEGVGKGPAVEFLIPVYPTH 120

Query: 121 LFRDLANKSERIWMFKSPNSY-SIIVAPIGLYAQFCVYFP 160
           ++ ++  +++R+W+FKS +   + I+AP+GL+AQF +YFP
Sbjct: 121 VYYNITFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFP 155

[Close]
BLAST of CSPI06G00340 vs. TrEMBL
Match: A0A0A0K7E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002300 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-17
Identity = 55/150 (36.67%), Postives = 89/150 (59.33%), Query Frame = 1 

Query: 11  LNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVLRFIATELDDY 70
           L+++ L+F +PR   ++  L   F +  + +ED+G ID   F SIDS   R + T   DY
Sbjct: 96  LDRLVLKFSSPR---NELPLIRKFRMRCAVKEDMGNIDLETFVSIDSQQFRRVVTGCRDY 155

Query: 71  DALVTLTNSEVKFSVNDKEISLYKEVDECIIGGVADEEESRFFVYLNPKILFRDLANKSE 130
              VT T+S V+FS   KE    +E  ECI+ GV   + + F + + P  +F ++  +++
Sbjct: 156 FVRVTTTHSHVRFSNEIKEFIFAREGGECIMEGVGKGKGTEFLIPIYPTHVFYNITFRAK 215

Query: 131 RIWMFKSPNSY-SIIVAPIGLYAQFCVYFP 160
           R+W+FKS +   + IVAP+GL+A+F +YFP
Sbjct: 216 RVWLFKSIDKLGTFIVAPVGLFARFVIYFP 242

[Close]
BLAST of CSPI06G00340 vs. TrEMBL
Match: A0A0A0KNE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G469020 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.1e-15
Identity = 45/123 (36.59%), Postives = 72/123 (58.54%), Query Frame = 1 

Query: 36  LSPSREEDVGEIDYGIFFSIDSLVLRFIATELDDYDALVTLTNSEVKFSVNDKEISLYKE 95
           L P +      IDY  F SIDS   + +  E++ +   V L++SE  FS ++K+I   KE
Sbjct: 7   LLPYKVNQELRIDYKAFVSIDSKDFKRVVLEINAHSVFVNLSDSEATFSNDNKKIIFTKE 66

Query: 96  VDECIIGGVADEEESRFFVYLNPKILFRDLANKSERIWMFKSPNSYSIIVAPIGLYAQFC 155
             +CIIGG+   +E    + L+P + F DL+ +++R+W+F   +  +I+V P GL+ QF 
Sbjct: 67  ERKCIIGGIKKGKEYEVLITLHPLVFFLDLSYQAQRLWLFIQKDFSTILVFPSGLWTQFW 126

Query: 156 VYF 159
           VYF
Sbjct: 127 VYF 129

[Close]
BLAST of CSPI06G00340 vs. NCBI nr
Match: gi|700190437|gb|KGN45641.1| (hypothetical protein Csa_6G002350 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 8.2e-93
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1 

Query: 1   MILFLHHQQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVL 60
           MILFLHHQQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVL
Sbjct: 1   MILFLHHQQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVL 60

Query: 61  RFIATELDDYDALVTLTNSEVKFSVNDKEISLYKEVDECIIGGVADEEESRFFVYLNPKI 120
           RFIATELDDYDALVTLTNSEVKFSVNDKEISLYKEVDECIIGGVADEEESRFFVYLNPKI
Sbjct: 61  RFIATELDDYDALVTLTNSEVKFSVNDKEISLYKEVDECIIGGVADEEESRFFVYLNPKI 120

Query: 121 LFRDLANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFPQLEEKSKRQRIC 172
           LFRDLANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFPQLEEKSKRQRIC
Sbjct: 121 LFRDLANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFPQLEEKSKRQRIC 171

[Close]
BLAST of CSPI06G00340 vs. NCBI nr
Match: gi|659117581|ref|XP_008458677.1| (PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo])

HSP 1 Score: 292.0 bits (746), Expect = 7.0e-76
Identity = 144/171 (84.21%), Postives = 153/171 (89.47%), Query Frame = 1 

Query: 1   MILFLHHQQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVL 60
           M L LH QQPL QI LQFRNPRVVDDQ+ L+H FPLSPSREEDVGEIDYGIFFSI+SLV 
Sbjct: 90  MTLSLHPQQPLIQIALQFRNPRVVDDQEALYHAFPLSPSREEDVGEIDYGIFFSIESLVF 149

Query: 61  RFIATELDDYDALVTLTNSEVKFSVNDKEISLYKEVDECIIGGVADEEESRFFVYLNPKI 120
           RFIA ELDD+DALVTLTNSEVKFSVNDK+I LYKE DECIIGGV   EESRFFVYLNPK+
Sbjct: 150 RFIAIELDDFDALVTLTNSEVKFSVNDKDIILYKERDECIIGGVEIGEESRFFVYLNPKV 209

Query: 121 LFRDLANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFPQLEEKSKRQRIC 172
           LFRDLA +S RIWMFKSP SYSI VAPIGLYAQFCVYFPQ+EE+SKRQRIC
Sbjct: 210 LFRDLAEQSARIWMFKSPRSYSITVAPIGLYAQFCVYFPQIEEQSKRQRIC 260

[Close]
BLAST of CSPI06G00340 vs. NCBI nr
Match: gi|659128753|ref|XP_008464355.1| (PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 62/159 (38.99%), Postives = 92/159 (57.86%), Query Frame = 1 

Query: 5   LHHQQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVLRFIA 64
           +H    + Q+ L+F +         + H   L+PS+EED+GE+DY  FFSIDS  LR + 
Sbjct: 92  IHLLANIKQLILRFESS---SHAPKVHHELSLTPSQEEDLGEVDYAKFFSIDSKDLRRVI 151

Query: 65  TELDDYDA---LVTLTNSEVKFSVNDKEISLYKEVDECIIGGVADEEESRFFVYLNPKIL 124
             L  +      VT T S+VKFS+  KEI L KE +EC+I G   EEE++F + LNP + 
Sbjct: 152 RNLPIFHGDSICVTATGSQVKFSIASKEIVLTKENEECMIVGYEGEEETKFRINLNPMLF 211

Query: 125 FRDLANKSERIWMFKSPNSYSIIVAP-IGLYAQFCVYFP 160
           F +  + + RIW +K+  S+  +V P  G +AQ+ + FP
Sbjct: 212 FLNFTHDALRIWFYKTTTSHGAMVVPAFGFFAQYVILFP 247

[Close]
BLAST of CSPI06G00340 vs. NCBI nr
Match: gi|659117585|ref|XP_008458679.1| (PREDICTED: uncharacterized protein LOC103498007 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-20
Identity = 57/158 (36.08%), Postives = 90/158 (56.96%), Query Frame = 1 

Query: 2   ILFLHHQQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVLR 61
           +LF    + L  IFL F++ +   ++  L     L     +  G+I+Y  FFSIDS   +
Sbjct: 92  MLFTIDMKRLQTIFLTFQDNKAKRERRTL----KLLAYDLDLYGDIEYTTFFSIDSKDFK 151

Query: 62  FIATELDDYDALVTLTNSEVKFSVNDKEISLYKEVDECIIGGVADEEESRFFVYLNPKIL 121
            I +E +     VT ++S+ +F    KEI   KE DEC+IGGV + EE RF + +NP + 
Sbjct: 152 HIVSEFNSRSVSVTFSDSQARFFTRSKEIVFTKEEDECVIGGVEEGEEFRFIITVNPLVF 211

Query: 122 FRDLANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFP 160
           F DL+N+S+R+W     +   ++V P+G++ QF +YFP
Sbjct: 212 FLDLSNQSKRVWFLMQSDFSCMMVLPLGMWHQFWIYFP 245

[Close]
BLAST of CSPI06G00340 vs. NCBI nr
Match: gi|700190435|gb|KGN45639.1| (hypothetical protein Csa_6G002330 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 7.1e-20
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 1 

Query: 45  GEIDYGIFFSIDSLVLRFIATELDDYDALVTLTNSEVKFSVNDKEISLYKEVDECIIGGV 104
           G+I+Y  F SIDS   R IA+EL+     VT TNS V F   +KEI+  KE ++C+IGGV
Sbjct: 131 GDIEYTTFVSIDSRDFRRIASELNSRSVSVTFTNSRVNFFNKNKEITFSKEENQCVIGGV 190

Query: 105 ADEEESRFFVYLNPKILFRDLANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFP 160
            + EE RF + ++P + F DL+++S+R+W     +   I++ P+GL+ QF VYFP
Sbjct: 191 EEGEEFRFIITVHPLVFFLDLSSQSKRVWFLMQRDFSCIMILPLGLWQQFWVYFP 245

The following BLAST results are available for this feature:
BLAST of CSPI06G00340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G00340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCY3_CUCSA5.7e-93100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002350 PE=4 SV=1[more]
A0A0A0K9W8_CUCSA4.9e-2044.35Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1[more]
A0A0A0LLD1_CUCSA9.3e-1938.13Uncharacterized protein OS=Cucumis sativus GN=Csa_2G154090 PE=4 SV=1[more]
A0A0A0K7E0_CUCSA1.0e-1736.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002300 PE=4 SV=1[more]
A0A0A0KNE7_CUCSA8.1e-1536.59Uncharacterized protein OS=Cucumis sativus GN=Csa_5G469020 PE=4 SV=1[more]
BLAST of CSPI06G00340 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G00340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190437|gb|KGN45641.1|8.2e-93100.00hypothetical protein Csa_6G002350 [Cucumis sativus][more]
gi|659117581|ref|XP_008458677.1|7.0e-7684.21PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo][more]
gi|659128753|ref|XP_008464355.1|1.7e-2138.99PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo][more]
gi|659117585|ref|XP_008458679.1|1.9e-2036.08PREDICTED: uncharacterized protein LOC103498007 [Cucumis melo][more]
gi|700190435|gb|KGN45639.1|7.1e-2044.35hypothetical protein Csa_6G002330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G00340.1CSPI06G00340.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G00340MELO3C035211.2Melon (DHL92) v3.6.1cpimedB413
CSPI06G00340CsaV3_6G000390Cucumber (Chinese Long) v3cpicucB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G00340Silver-seed gourdcarcpiB0077
CSPI06G00340Silver-seed gourdcarcpiB0641
CSPI06G00340Watermelon (97103) v2cpiwmbB499
CSPI06G00340Wax gourdcpiwgoB538
CSPI06G00340Cucumber (Gy14) v1cgycpiB198
CSPI06G00340Cucurbita maxima (Rimu)cmacpiB372
CSPI06G00340Cucurbita maxima (Rimu)cmacpiB925
CSPI06G00340Cucurbita moschata (Rifu)cmocpiB360
CSPI06G00340Cucurbita moschata (Rifu)cmocpiB903
CSPI06G00340Cucumber (Chinese Long) v2cpicuB314
CSPI06G00340Melon (DHL92) v3.5.1cpimeB418
CSPI06G00340Watermelon (Charleston Gray)cpiwcgB507
CSPI06G00340Watermelon (97103) v1cpiwmB558
CSPI06G00340Cucurbita pepo (Zucchini)cpecpiB143
CSPI06G00340Cucurbita pepo (Zucchini)cpecpiB317
CSPI06G00340Bottle gourd (USVL1VR-Ls)cpilsiB397
CSPI06G00340Cucumber (Gy14) v2cgybcpiB288