CSPI06G00320 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G00320
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 270651 .. 271769 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCCAGTGAGGATCTTCAGGGTTGAACACCTCCTTCGTTTTACCAGAGCATTCCATTTACTCACTATAATTGGTGAAGAAAGAGGCAACGTGGAATTTTACAGTTCTGGTTTCGACTTAGTAGTGGTCTCCCGTCATCTCTTCGTAGTACTACATATTAAACCTCCATTTTTGCTCTATTACCAACCTCCAATATTTTCAAGGTTTTTGAGAATTCATCTTTGGGAATTTCGCGATCATCTCAGAGATACATTACTTACTTCTTCTTCAATGGACTTCAATCTTGATTGTCGTCGTTATCCACCATTAGCAGCCCTTACATTTCATGATGATACTGGTAACTATTTAATTTCTTCTTCATCATTTTCTTTTCTTCTAATAATAATTCATCTTTATATTTCTTGGATGAATGAAGTTTCTGCATGTTATTATTTCTTGGGTTCTTGTTCGGTTACCGTTTCTAGTTTTTAAAACTTAATAAACCATTTGTTTTATTTAATTTAGTTTAGAATTTGACTTGGAATCATGTACTGCTGTTGATCTTTAACAAACATTGGCATCACCTTATAACTTGACATATTGATTTGTTGGTATTGTAATAGTTGCGCGCTCCACTCGTATATTATGGGTGTCAAATACAGAATATATAGGGAATTTGGGTGATGTTACACTTAAAAAATTTGTCTCAATTAATTCAGAACAGTTGAAACGAATTGCGATAGAGTTCATGAATATTGACAAAGGTAATATTACCACAACTCATCTCTTCTTTCCTTCTCTCATTAATTGAAGTTGGATCTCTTACATAAACTAATTAAATTGCTTGTTGCTTGTTTCACAGTTAATGTTGTGTTGACTAATTCACAAGTGACATTCTCAAGTGAATTCAAAGGGCCGATAACTTTTAATGTAGAGAACAATGAATGCTTAATTAGTGGTGTTAATGATGATGAAAGAACTGAATACTCAGTAAAGTTTCGACCCACATCATTTTTTTGCGAGTTGGCAACTTTGGTAGACAGAGTATGGTTCTATCATGAGACAGTTAAATCAGAAATTATACTCTCAGCTCCAGTCAGCATCGATGTTATACTTATGATGAGTTTCCGGAATTGA

mRNA sequence

ATGGTTCCAGTGAGGATCTTCAGGGTTGAACACCTCCTTCGTTTTACCAGAGCATTCCATTTACTCACTATAATTGGTGAAGAAAGAGGCAACGTGGAATTTTACAGTTCTGGTTTCGACTTAGTAGTGGTCTCCCGTCATCTCTTCGTAGTACTACATATTAAACCTCCATTTTTGCTCTATTACCAACCTCCAATATTTTCAAGGTTTTTGAGAATTCATCTTTGGGAATTTCGCGATCATCTCAGAGATACATTACTTACTTCTTCTTCAATGGACTTCAATCTTGATTGTCGTCGTTATCCACCATTAGCAGCCCTTACATTTCATGATGATACTGAACAGTTGAAACGAATTGCGATAGAGTTCATGAATATTGACAAAGTTAATGTTGTGTTGACTAATTCACAAGTGACATTCTCAAGTGAATTCAAAGGGCCGATAACTTTTAATGTAGAGAACAATGAATGCTTAATTAGTGGTGTTAATGATGATGAAAGAACTGAATACTCAGTAAAGTTTCGACCCACATCATTTTTTTGCGAGTTGGCAACTTTGGTAGACAGAGTATGGTTCTATCATGAGACAGTTAAATCAGAAATTATACTCTCAGCTCCAGTCAGCATCGATGTTATACTTATGATGAGTTTCCGGAATTGA

Coding sequence (CDS)

ATGGTTCCAGTGAGGATCTTCAGGGTTGAACACCTCCTTCGTTTTACCAGAGCATTCCATTTACTCACTATAATTGGTGAAGAAAGAGGCAACGTGGAATTTTACAGTTCTGGTTTCGACTTAGTAGTGGTCTCCCGTCATCTCTTCGTAGTACTACATATTAAACCTCCATTTTTGCTCTATTACCAACCTCCAATATTTTCAAGGTTTTTGAGAATTCATCTTTGGGAATTTCGCGATCATCTCAGAGATACATTACTTACTTCTTCTTCAATGGACTTCAATCTTGATTGTCGTCGTTATCCACCATTAGCAGCCCTTACATTTCATGATGATACTGAACAGTTGAAACGAATTGCGATAGAGTTCATGAATATTGACAAAGTTAATGTTGTGTTGACTAATTCACAAGTGACATTCTCAAGTGAATTCAAAGGGCCGATAACTTTTAATGTAGAGAACAATGAATGCTTAATTAGTGGTGTTAATGATGATGAAAGAACTGAATACTCAGTAAAGTTTCGACCCACATCATTTTTTTGCGAGTTGGCAACTTTGGTAGACAGAGTATGGTTCTATCATGAGACAGTTAAATCAGAAATTATACTCTCAGCTCCAGTCAGCATCGATGTTATACTTATGATGAGTTTCCGGAATTGA
Homology
[Close]
BLAST of CSPI06G00320 vs. TrEMBL
Match: A0A0A0K7E3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002340 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 4.8e-121
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1 

Query: 1   MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL 60
           MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL
Sbjct: 1   MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL 60

Query: 61  YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIA 120
           YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIA
Sbjct: 61  YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIA 120

Query: 121 IEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFF 180
           IEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFF
Sbjct: 121 IEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFF 180

Query: 181 CELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN 220
           CELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN
Sbjct: 181 CELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN 219

[Close]
BLAST of CSPI06G00320 vs. TrEMBL
Match: A0A0A0K9W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.8e-06
Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 1 

Query: 112 DTEQLKRIAIEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYS 171
           D+   +RIA E +N   V+V  TNS+V F ++ K  ITF+ E N+C+I GV + E   + 
Sbjct: 142 DSRDFRRIASE-LNSRSVSVTFTNSRVNFFNKNK-EITFSKEENQCVIGGVEEGEEFRFI 201

Query: 172 VKFRPTSFFCELATLVDRVWF 193
           +   P  FF +L++   RVWF
Sbjct: 202 ITVHPLVFFLDLSSQSKRVWF 220

[Close]
BLAST of CSPI06G00320 vs. NCBI nr
Match: gi|700190436|gb|KGN45640.1| (hypothetical protein Csa_6G002340 [Cucumis sativus])

HSP 1 Score: 441.8 bits (1135), Expect = 7.0e-121
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1 

Query: 1   MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL 60
           MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL
Sbjct: 1   MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL 60

Query: 61  YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIA 120
           YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIA
Sbjct: 61  YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIA 120

Query: 121 IEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFF 180
           IEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFF
Sbjct: 121 IEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFF 180

Query: 181 CELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN 220
           CELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN
Sbjct: 181 CELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN 219

[Close]
BLAST of CSPI06G00320 vs. NCBI nr
Match: gi|659116800|ref|XP_008458266.1| (PREDICTED: uncharacterized protein LOC103497734 isoform X1 [Cucumis melo])

HSP 1 Score: 276.6 bits (706), Expect = 3.9e-71
Identity = 146/252 (57.94%), Postives = 175/252 (69.44%), Query Frame = 1 

Query: 1   MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL 60
           MV VRIF+++HL+RF RAFHLLT IGEERGN+EFY SG D VV+SRHLFV+LHI+ PFL 
Sbjct: 1   MVTVRIFKLQHLIRFMRAFHLLTTIGEERGNIEFYKSGLDFVVISRHLFVLLHIRHPFLH 60

Query: 61  YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDD-------- 120
           +YQPP  S +  IHL EFR HL    LTSSSMDFNLD   YPPLAALTFHDD        
Sbjct: 61  HYQPPNSSNYFTIHLKEFRQHLGHRALTSSSMDFNLD-HHYPPLAALTFHDDNSGARFTR 120

Query: 121 -------------------------TEQLKRIAIEFMNIDKVNVVLTNSQVTFSSEFKGP 180
                                    +E+ K I +EFMNIDKVNVVLTNSQVTFSSEFK  
Sbjct: 121 IINVSNSEHIGKLGGLTIKKFVSMDSEKFKLIVMEFMNIDKVNVVLTNSQVTFSSEFK-E 180

Query: 181 ITFNVENNECLISGVNDDERTEYSVKFRPTSFFCELATLVDRVWFYHETVKSEIILSAPV 220
           IT N E+  C+ISGV+D ER +YSV+F+PTSFFC+LA L+++V FYHET K  I +SAP+
Sbjct: 181 ITINAEDQGCIISGVDDGERIQYSVRFQPTSFFCDLANLIEKVTFYHETTKRNIAMSAPI 240

[Close]
BLAST of CSPI06G00320 vs. NCBI nr
Match: gi|659116802|ref|XP_008458267.1| (PREDICTED: uncharacterized protein LOC103497734 isoform X2 [Cucumis melo])

HSP 1 Score: 264.2 bits (674), Expect = 2.0e-67
Identity = 136/219 (62.10%), Postives = 163/219 (74.43%), Query Frame = 1 

Query: 1   MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL 60
           MV VRIF+++HL+RF RAFHLLT IGEERGN+EFY SG D VV+SRHLFV+LHI+ PFL 
Sbjct: 1   MVTVRIFKLQHLIRFMRAFHLLTTIGEERGNIEFYKSGLDFVVISRHLFVLLHIRHPFLH 60

Query: 61  YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIA 120
           +YQPP  S +  IHL EFR HL    LTSSSMDFNLD   YPPLAALTFHDD        
Sbjct: 61  HYQPPNSSNYFTIHLKEFRQHLGHRALTSSSMDFNLD-HHYPPLAALTFHDD-------- 120

Query: 121 IEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFF 180
                 + VNVVLTNSQVTFSSEFK  IT N E+  C+ISGV+D ER +YSV+F+PTSFF
Sbjct: 121 ------NSVNVVLTNSQVTFSSEFK-EITINAEDQGCIISGVDDGERIQYSVRFQPTSFF 180

Query: 181 CELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN 220
           C+LA L+++V FYHET K  I +SAP+  + I +++F N
Sbjct: 181 CDLANLIEKVTFYHETTKRNIAMSAPIGFNSIFIINFLN 203

[Close]
BLAST of CSPI06G00320 vs. NCBI nr
Match: gi|659116798|ref|XP_008458265.1| (PREDICTED: uncharacterized protein LOC103497733 [Cucumis melo])

HSP 1 Score: 253.4 bits (646), Expect = 3.5e-64
Identity = 138/251 (54.98%), Postives = 171/251 (68.13%), Query Frame = 1 

Query: 5   RIFRVEH-LLRFTRAFHLLTIIGEERG-NVEFYSSGFDLVVVSRHLFVVLHIKPPFLL-Y 64
           RIFR+EH LLRF RA HLLT IGEER  ++EFYSSG   VVVS HL V+LHI+PP LL Y
Sbjct: 6   RIFRLEHGLLRFMRALHLLTTIGEERAAHLEFYSSGLKFVVVSHHLCVILHIRPPLLLHY 65

Query: 65  YQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTF-HD--------- 124
           YQPP  S++L IHL EF D LRD + TSS MDFNLD  R PPLA LTF HD         
Sbjct: 66  YQPPNSSKYLNIHLKEFCDLLRDKICTSSWMDFNLD-HRQPPLATLTFGHDDCGEDFTGS 125

Query: 125 -----------------------DTEQLKRIAIEFMNIDKVNVVLTNSQVTFSSEFKGPI 184
                                  D++Q KRI +EF+NIDKV+VVLTNSQ+TFS EF   I
Sbjct: 126 IRVSNSKDEGDFGDITSTKFVSIDSKQFKRIVMEFINIDKVDVVLTNSQLTFSCEFNKEI 185

Query: 185 TFNVENNECLISGVNDDERTEYSVKFRPTSFFCELATLVDRVWFYHETVKSEIILSAPVS 220
           T NVE+ EC+I GVN +ER EYS+KFRPT FF +L ++++RVWFYH T K+ I++SAP++
Sbjct: 186 TLNVEDKECIIGGVNSEERVEYSIKFRPTKFFSDLTSMIERVWFYHNTTKTNIVISAPIA 245

[Close]
BLAST of CSPI06G00320 vs. NCBI nr
Match: gi|700190435|gb|KGN45639.1| (hypothetical protein Csa_6G002330 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 9.7e-06
Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 1 

Query: 112 DTEQLKRIAIEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYS 171
           D+   +RIA E +N   V+V  TNS+V F ++ K  ITF+ E N+C+I GV + E   + 
Sbjct: 142 DSRDFRRIASE-LNSRSVSVTFTNSRVNFFNKNK-EITFSKEENQCVIGGVEEGEEFRFI 201

Query: 172 VKFRPTSFFCELATLVDRVWF 193
           +   P  FF +L++   RVWF
Sbjct: 202 ITVHPLVFFLDLSSQSKRVWF 220

The following BLAST results are available for this feature:
BLAST of CSPI06G00320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G00320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7E3_CUCSA4.8e-121100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002340 PE=4 SV=1[more]
A0A0A0K9W8_CUCSA6.8e-0639.51Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1[more]
BLAST of CSPI06G00320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G00320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190436|gb|KGN45640.1|7.0e-121100.00hypothetical protein Csa_6G002340 [Cucumis sativus][more]
gi|659116800|ref|XP_008458266.1|3.9e-7157.94PREDICTED: uncharacterized protein LOC103497734 isoform X1 [Cucumis melo][more]
gi|659116802|ref|XP_008458267.1|2.0e-6762.10PREDICTED: uncharacterized protein LOC103497734 isoform X2 [Cucumis melo][more]
gi|659116798|ref|XP_008458265.1|3.5e-6454.98PREDICTED: uncharacterized protein LOC103497733 [Cucumis melo][more]
gi|700190435|gb|KGN45639.1|9.7e-0639.51hypothetical protein Csa_6G002330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000077 DNA damage checkpoint
cellular_component GO:0005575 cellular_component
cellular_component GO:0030896 checkpoint clamp complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G00320.1CSPI06G00320.1mRNA