CSPI05G31000 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G31000
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 28724930 .. 28726156 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGATGGAATTGATATTGCCCTTTACAGCTTGTAAGGCGAGAAATCAGTTTTATAAGTTTGAAATGAAGTTCCAAAGCTTTTGTTCTACAAGAAGTTCCAGTCTATGTGCATGTTTTGGAGCTTCGAGCTCATCGAACTTTGGAGCTATGAAGCTTGGAATCATTGGAGTGACAACTTCACTATCTTCCAGTAAGCCCAAAATCATTGTGCGTGCCCCCACCCCCCCTGTGACATAAAGTTACAATAGAGACTAATTTCAAAACTATTAAACTTGTAAGATTTATGTTTTAACATTTGAAAGCATGTGGACTAAAATAGACTAAGTATCAAAGTACAAAGACAAAAATGGTATTTTAACTTAAAAAAATGTGGAATGGGTTTTTGATACGGAATGGCGATAGTTAAACAATATTTTTGAAGTTTTGGTAACATGTCAAAAAAGAGATTTTAATGCCTATTTTTCAAGTTTCGTTTTCTTTAGTATGGTTTTTTTAATTTATTTTTTAATAATTCAATATATTCTCTTTTTAATTTAAATTTATGAATACACAAAGTCGCATTTTTTGTCTTCATATTAAACAAATTAATATCATATAATGTTTTTTTCAATATAGTAGGAGGTGGGGGTATTTGAACAACAAATAGATTGGTTGCTAACATTTTCGTATCTCACTTGAGTTATGCTTACTTTGATACATTCTATGATTTAAATAGGGTAATTATAATGGATGACCATTTGAGGAATAATAATTAAGGATATAACAACATTTTAAAAAAATTGCAAATATAGCAAAATTATCGCTGATAGACTTGTACCACTGATAGATTCGTATGATCTATCGGTGATAGATCAATTTTTACAACATGGTCTATCAGTGATAGACTCTATCATCGATAGAATTAGACAAATTTTGTTATATTTGCAATTTGTTTAAAATGTTGCTATATACCTAATTATTTTGAATTTAATTGCTAAATTTGCAACTATTCCATTTAAATATTCTATCAACACATCTAAAATTATATTGATATGAATTTGTGCCCTCCCTACATCCAATCGTGGATCCGCCACTGATGTATTGTGCATTATTGTATCTTGTAAAAATTTTAACTTGTTTTTGTTCTGGGCAGAATCCTCAAGAATGACTGTTTGTGCAGTTAGTTTCCGCCCTTGTATTGATATACACCAGGTATTTGATCTTTTGTTTGGCTACATTCCTTGAC

mRNA sequence

ATGGAATTGATATTGCCCTTTACAGCTTGTAAGGCGAGAAATCAGTTTTATAAGTTTGAAATGAAGTTCCAAAGCTTTTGTTCTACAAGAAGTTCCAGTCTATGTGCATGTTTTGGAGCTTCGAGCTCATCGAACTTTGGAGCTATGAAGCTTGGAATCATTGGAGTGACAACTTCACTATCTTCCAAATCCTCAAGAATGACTGTTTGTGCAGTTAGTTTCCGCCCTTGTATTGATATACACCAGGTATTTGATCTTTTGTTTGGCTACATTCCTTGA

Coding sequence (CDS)

ATGGAATTGATATTGCCCTTTACAGCTTGTAAGGCGAGAAATCAGTTTTATAAGTTTGAAATGAAGTTCCAAAGCTTTTGTTCTACAAGAAGTTCCAGTCTATGTGCATGTTTTGGAGCTTCGAGCTCATCGAACTTTGGAGCTATGAAGCTTGGAATCATTGGAGTGACAACTTCACTATCTTCCAAATCCTCAAGAATGACTGTTTGTGCAGTTAGTTTCCGCCCTTGTATTGATATACACCAGGTATTTGATCTTTTGTTTGGCTACATTCCTTGA
Homology
[Close]
BLAST of CSPI05G31000 vs. TrEMBL
Match: A0A0A0KW55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G649900 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 8.3e-38
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 1 

Query: 1  MELILPFTACKARNQFYKFEMKFQSFCSTRSSSLCACFGASSSSNFGAMKLGIIGVTTSL 60
          MELILPFTACKARN+FYKFEMKFQSFCSTRSSSLCACFGASSSSNFGAMKLGIIGVTTSL
Sbjct: 1  MELILPFTACKARNRFYKFEMKFQSFCSTRSSSLCACFGASSSSNFGAMKLGIIGVTTSL 60

Query: 61 SSKSSRMTVCAVSFRPCIDIHQVFDLLF 89
          SSKSSRMTVCAVSFRPCIDIHQ+  + F
Sbjct: 61 SSKSSRMTVCAVSFRPCIDIHQILQVYF 88

[Close]
BLAST of CSPI05G31000 vs. NCBI nr
Match: gi|700197495|gb|KGN52672.1| (hypothetical protein Csa_5G649900 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-37
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 1 

Query: 1  MELILPFTACKARNQFYKFEMKFQSFCSTRSSSLCACFGASSSSNFGAMKLGIIGVTTSL 60
          MELILPFTACKARN+FYKFEMKFQSFCSTRSSSLCACFGASSSSNFGAMKLGIIGVTTSL
Sbjct: 1  MELILPFTACKARNRFYKFEMKFQSFCSTRSSSLCACFGASSSSNFGAMKLGIIGVTTSL 60

Query: 61 SSKSSRMTVCAVSFRPCIDIHQVFDLLF 89
          SSKSSRMTVCAVSFRPCIDIHQ+  + F
Sbjct: 61 SSKSSRMTVCAVSFRPCIDIHQILQVYF 88

[Close]
BLAST of CSPI05G31000 vs. NCBI nr
Match: gi|449447589|ref|XP_004141550.1| (PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino])

HSP 1 Score: 121.3 bits (303), Expect = 8.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 21 MKFQSFCSTRSSSLCACFGASSSSNFGAMKLGIIGVTTSLSSKSSRMTVCAVSFRPCIDI 80
          MKFQSFCSTRSSSLCACFGASSSSNFGAMKLGIIGVTTSLSSKSSRMTVCAVSFRPCIDI
Sbjct: 1  MKFQSFCSTRSSSLCACFGASSSSNFGAMKLGIIGVTTSLSSKSSRMTVCAVSFRPCIDI 60

Query: 81 HQ 83
          HQ
Sbjct: 61 HQ 62

[Close]
BLAST of CSPI05G31000 vs. NCBI nr
Match: gi|778707941|ref|XP_011656091.1| (PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino])

HSP 1 Score: 121.3 bits (303), Expect = 8.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 21 MKFQSFCSTRSSSLCACFGASSSSNFGAMKLGIIGVTTSLSSKSSRMTVCAVSFRPCIDI 80
          MKFQSFCSTRSSSLCACFGASSSSNFGAMKLGIIGVTTSLSSKSSRMTVCAVSFRPCIDI
Sbjct: 1  MKFQSFCSTRSSSLCACFGASSSSNFGAMKLGIIGVTTSLSSKSSRMTVCAVSFRPCIDI 60

Query: 81 HQ 83
          HQ
Sbjct: 61 HQ 62

[Close]
BLAST of CSPI05G31000 vs. NCBI nr
Match: gi|659119348|ref|XP_008459607.1| (PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino])

HSP 1 Score: 109.4 bits (272), Expect = 3.5e-21
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 21 MKFQSFCSTRSSSLCACFGASSSSNFGAMKLGIIGVTTSLSSKSSRMTVCAVSFRPCIDI 80
          M FQSFCST+SSSLCA  GASSSSNFGAMKLGIIGVTTSLSS+SSRMTVCAVSFRPCIDI
Sbjct: 1  MMFQSFCSTKSSSLCAFSGASSSSNFGAMKLGIIGVTTSLSSRSSRMTVCAVSFRPCIDI 60

Query: 81 HQ 83
          HQ
Sbjct: 61 HQ 62

[Close]
BLAST of CSPI05G31000 vs. NCBI nr
Match: gi|659119344|ref|XP_008459605.1| (PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino])

HSP 1 Score: 109.4 bits (272), Expect = 3.5e-21
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 21 MKFQSFCSTRSSSLCACFGASSSSNFGAMKLGIIGVTTSLSSKSSRMTVCAVSFRPCIDI 80
          M FQSFCST+SSSLCA  GASSSSNFGAMKLGIIGVTTSLSS+SSRMTVCAVSFRPCIDI
Sbjct: 1  MMFQSFCSTKSSSLCAFSGASSSSNFGAMKLGIIGVTTSLSSRSSRMTVCAVSFRPCIDI 60

Query: 81 HQ 83
          HQ
Sbjct: 61 HQ 62

The following BLAST results are available for this feature:
BLAST of CSPI05G31000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G31000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW55_CUCSA8.3e-3893.18Uncharacterized protein OS=Cucumis sativus GN=Csa_5G649900 PE=4 SV=1[more]
BLAST of CSPI05G31000 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G31000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197495|gb|KGN52672.1|1.2e-3793.18hypothetical protein Csa_5G649900 [Cucumis sativus][more]
gi|449447589|ref|XP_004141550.1|8.8e-25100.00PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino][more]
gi|778707941|ref|XP_011656091.1|8.8e-25100.00PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino][more]
gi|659119348|ref|XP_008459607.1|3.5e-2191.94PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino][more]
gi|659119344|ref|XP_008459605.1|3.5e-2191.94PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G31000.1CSPI05G31000.1mRNA