CSPI05G30580 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G30580
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr5 : 28439043 .. 28439348 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTGGCTGGTTCATCATCTCATGCATCTCATTTGCCTTTTAATGTTTTCATAGGTTTCAACAGACATGAGGAAGACAACAAATACAAAAGTTCTACGAGGGATTTATATAAGATTTTGTGTATCCAGGGAATGAAGGTGTTTATGGATGATGATGGTGGTGGTGGTGGTGGTAGTAAGAAGAAGGTGTTAATGGATGAAGATAATGTGAGCGATAAGATTGTGAAAGCAATTGAAACTTACAGGTATAATTGGTTATATACATATCAAAACACCCTCTCCCGTATTACACCACCAAAAACT

mRNA sequence

ATGGTTTTGGCTGGTTCATCATCTCATGCATCTCATTTGCCTTTTAATGTTTTCATAGGTTTCAACAGACATGAGGAAGACAACAAATACAAAAGTTCTACGAGGGATTTATATAAGATTTTGTGTATCCAGGGAATGAAGGTGTTTATGGATGATGATGGTGGTGGTGGTGGTGGTAGTAAGAAGAAGGTGTTAATGGATGAAGATAATGTGAGCGATAAGATTGTGAAAGCAATTGAAACTTACAGGTATAATTGGTTATATACATATCAAAACACCCTCTCCCGTATTACACCACCAAAAACT

Coding sequence (CDS)

ATGGTTTTGGCTGGTTCATCATCTCATGCATCTCATTTGCCTTTTAATGTTTTCATAGGTTTCAACAGACATGAGGAAGACAACAAATACAAAAGTTCTACGAGGGATTTATATAAGATTTTGTGTATCCAGGGAATGAAGGTGTTTATGGATGATGATGGTGGTGGTGGTGGTGGTAGTAAGAAGAAGGTGTTAATGGATGAAGATAATGTGAGCGATAAGATTGTGAAAGCAATTGAAACTTACAGGTATAATTGGTTATATACATATCAAAACACCCTCTCCCGTATTACACCACCAAAAACT

Homology

[Close]

BLAST of CSPI05G30580 vs. TrEMBL
Match: A0A0A0KSQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647520 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 2.9e-52
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 1


Query: 1   MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS 60
           MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS
Sbjct: 1   MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS 60

Query: 61  KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTLSRITPPKT 103
           KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNT SRITPPKT
Sbjct: 61  KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTFSRITPPKT 102

[Close]

BLAST of CSPI05G30580 vs. TrEMBL
Match: Q5DMW3_CUCME (MRGH10 OS=Cucumis melo GN=MRGH10 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-09
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSKKK 63
          AGSSSH S + F+ F+ FNR EED+ Y+   + LY+ L   G+K+FMDD        KK 
Sbjct: 3  AGSSSHPSQMAFDAFLSFNRDEEDDGYRYFIKGLYETLSEWGIKLFMDD-------GKKM 62

Query: 64 VLMDEDNVSDKIVKAIE 81
             DE N+SD IVKAIE
Sbjct: 63 FTDDEVNLSDNIVKAIE 72

[Close]

BLAST of CSPI05G30580 vs. TrEMBL
Match: M4QW81_CUCME (Prv splice variant B OS=Cucumis melo GN=Prv PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-09
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGG------- 63
          AGSSSH S + F+VF+ FNR EED+ Y+   + LY+ L   G+K+FMDDD          
Sbjct: 3  AGSSSHPSQMAFDVFLSFNRDEEDDGYRRFIKCLYETLSEWGIKMFMDDDKKMFMDDIKM 62

Query: 64 -GGGSKKKVLMDEDNVSDKIVKAIE 81
               KK  + DE N+SD IVKAIE
Sbjct: 63 LKDDGKKMFMDDEVNLSDDIVKAIE 87

[Close]

BLAST of CSPI05G30580 vs. TrEMBL
Match: M4QW86_CUCME (Prv splice variant B OS=Cucumis melo GN=Prv PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-09
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGG------- 63
          AGSSSH S + F+VF+ FNR EED+ Y+   + LY+ L   G+K+FMDDD          
Sbjct: 3  AGSSSHPSQMAFDVFLSFNRDEEDDGYRRFIKCLYETLSEWGIKMFMDDDKKMFMDDIKM 62

Query: 64 -GGGSKKKVLMDEDNVSDKIVKAIE 81
               KK  + DE N+SD IVKAIE
Sbjct: 63 LKDDGKKMFMDDEVNLSDDIVKAIE 87

[Close]

BLAST of CSPI05G30580 vs. TrEMBL
Match: A0A0A0KUR0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647560 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1


Query: 3  LAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSKK 62
          +AGSSSH S + F+ F+ FNR EED+ Y+   +DLY+ L   G+K+FMD           
Sbjct: 1  MAGSSSHPSQMAFDAFLSFNRDEEDDGYRRFIKDLYETLSEWGIKMFMD----------- 60

Query: 63 KVLMDEDNVSDKIVKAIE 81
              +E N+SD IVKAIE
Sbjct: 61 ----EEVNLSDNIVKAIE 63

[Close]

BLAST of CSPI05G30580 vs. NCBI nr
Match: gi|700197453|gb|KGN52630.1| (hypothetical protein Csa_5G647520 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 4.2e-52
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 1


Query: 1   MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS 60
           MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS
Sbjct: 1   MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS 60

Query: 61  KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTLSRITPPKT 103
           KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNT SRITPPKT
Sbjct: 61  KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTFSRITPPKT 102

[Close]

BLAST of CSPI05G30580 vs. NCBI nr
Match: gi|659119545|ref|XP_008459714.1| (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSKKK 63
          AGSSSH S + F+ F+ FNR EED+ Y+   + LY+ L   G+K+FMDD        KK 
Sbjct: 3  AGSSSHPSQMAFDAFLSFNRDEEDDGYRYFIKGLYETLSEWGIKLFMDD-------GKKM 62

Query: 64 VLMDEDNVSDKIVKAIE 81
             DE N+SD IVKAIE
Sbjct: 63 FTDDEVNLSDNIVKAIE 72

[Close]

BLAST of CSPI05G30580 vs. NCBI nr
Match: gi|51477385|gb|AAU04758.1| (MRGH10 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSKKK 63
          AGSSSH S + F+ F+ FNR EED+ Y+   + LY+ L   G+K+FMDD        KK 
Sbjct: 3  AGSSSHPSQMAFDAFLSFNRDEEDDGYRYFIKGLYETLSEWGIKLFMDD-------GKKM 62

Query: 64 VLMDEDNVSDKIVKAIE 81
             DE N+SD IVKAIE
Sbjct: 63 FTDDEVNLSDNIVKAIE 72

[Close]

BLAST of CSPI05G30580 vs. NCBI nr
Match: gi|469474108|gb|AGH33849.1| (Prv splice variant B [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 5.7e-09
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGG------- 63
          AGSSSH S + F+VF+ FNR EED+ Y+   + LY+ L   G+K+FMDDD          
Sbjct: 3  AGSSSHPSQMAFDVFLSFNRDEEDDGYRRFIKCLYETLSEWGIKMFMDDDKKMFMDDIKM 62

Query: 64 -GGGSKKKVLMDEDNVSDKIVKAIE 81
               KK  + DE N+SD IVKAIE
Sbjct: 63 LKDDGKKMFMDDEVNLSDDIVKAIE 87

[Close]

BLAST of CSPI05G30580 vs. NCBI nr
Match: gi|469474114|gb|AGH33854.1| (Prv splice variant B [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 5.7e-09
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGG------- 63
          AGSSSH S + F+VF+ FNR EED+ Y+   + LY+ L   G+K+FMDDD          
Sbjct: 3  AGSSSHPSQMAFDVFLSFNRDEEDDGYRRFIKCLYETLSEWGIKMFMDDDKKMFMDDIKM 62

Query: 64 -GGGSKKKVLMDEDNVSDKIVKAIE 81
               KK  + DE N+SD IVKAIE
Sbjct: 63 LKDDGKKMFMDDEVNLSDDIVKAIE 87

The following BLAST results are available for this feature:

BLAST of CSPI05G30580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G30580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSQ6_CUCSA	2.9e-52	99.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647520 PE=4 SV=1	[more]
Q5DMW3_CUCME	1.0e-09	49.35	MRGH10 OS=Cucumis melo GN=MRGH10 PE=4 SV=1	[more]
M4QW81_CUCME	4.0e-09	47.06	Prv splice variant B OS=Cucumis melo GN=Prv PE=4 SV=1	[more]
M4QW86_CUCME	4.0e-09	47.06	Prv splice variant B OS=Cucumis melo GN=Prv PE=4 SV=1	[more]
A0A0A0KUR0_CUCSA	3.4e-08	44.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647560 PE=4 SV=1	[more]

BLAST of CSPI05G30580 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI05G30580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197453\|gb\|KGN52630.1\|	4.2e-52	99.02	hypothetical protein Csa_5G647520 [Cucumis sativus]	[more]
gi\|659119545\|ref\|XP_008459714.1\|	1.5e-09	49.35	PREDICTED: TMV resistance protein N-like [Cucumis melo]	[more]
gi\|51477385\|gb\|AAU04758.1\|	1.5e-09	49.35	MRGH10 [Cucumis melo]	[more]
gi\|469474108\|gb\|AGH33849.1\|	5.7e-09	47.06	Prv splice variant B [Cucumis melo]	[more]
gi\|469474114\|gb\|AGH33854.1\|	5.7e-09	47.06	Prv splice variant B [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0032559	adenyl ribonucleotide binding
molecular_function	GO:0043168	anion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0032550	purine ribonucleoside binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G30580.1	CSPI05G30580.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G30580	Csa5G647520	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G30580	Lsi08G001320	Bottle gourd (USVL1VR-Ls)	cpilsiB395
CSPI05G30580	MELO3C022145.2	Melon (DHL92) v3.6.1	cpimedB339
CSPI05G30580	CsaV3_5G039670	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G30580	Bhi06G000157	Wax gourd	cpiwgoB465
CSPI05G30580	Cucsa.237510	Cucumber (Gy14) v1	cgycpiB353

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G30580	Cucumber (Gy14) v2	cgybcpiB225
CSPI05G30580	Silver-seed gourd	carcpiB0190
CSPI05G30580	Silver-seed gourd	carcpiB0710
CSPI05G30580	Watermelon (97103) v2	cpiwmbB424
CSPI05G30580	Cucurbita maxima (Rimu)	cmacpiB029
CSPI05G30580	Cucurbita maxima (Rimu)	cmacpiB486
CSPI05G30580	Cucurbita moschata (Rifu)	cmocpiB020
CSPI05G30580	Cucurbita moschata (Rifu)	cmocpiB476
CSPI05G30580	Melon (DHL92) v3.5.1	cpimeB349
CSPI05G30580	Watermelon (Charleston Gray)	cpiwcgB431
CSPI05G30580	Watermelon (Charleston Gray)	cpiwcgB433
CSPI05G30580	Watermelon (97103) v1	cpiwmB385
CSPI05G30580	Cucurbita pepo (Zucchini)	cpecpiB580
CSPI05G30580	Cucurbita pepo (Zucchini)	cpecpiB792