CSPI05G27980 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G27980
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr5 : 26451468 .. 26452597 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGTGGCATTTCCATTTAGGCCATCCCAACTTTAAATATATGAAATACCTATTTCCTCATCTTTTTTTCAAAGTTGATGTTTCATGCTTATCTTGTGATGTATGCATGCAAGCTAAACAACACCGAGTTTCGTTTCCTTCGCAACCCTATAAGTCAACCCAACCTTTTACTCTTGTCCATAGTGATGTTTGGGGATCGTCCAAGGTCACTACCTCCTCTAGAAAACGATGGTTTGTGACCTTTATTGATGACCCTACTTGTCTTACTTGGGTTTTCCTGATCTCCAACAAATCCGAAGTTACCTCCACATTTTGAGATTTCTATCACACCATAGAAACGCGATTCAATACAAAGATTGCAATCTTGCGAAGCTCCATGAGTTCTTATCCTCTAAAGGAATTGTTCACCAAATTTCTTGTGCTTACACCCCTAACAAAATGAGGTTGCTGAACGAAAAAATCGTCATCTTTTGAAAGTTGCTCGTTCCCTTAATGTGTCCACGTCTCTTCCTTCATATCCTTGGGGTGATGTCATTCTCACTGCCGCTCATCTCATCAACCGCATGCCTTCCCGTGTCCTTCACTTCCAGACACCGTTAGATTGCCTTAAAGAATCTTATCTCTCCACTCATCTCATCCCTGATGTTCCCCTTTGGGTCTTCGACTGCACTACCTATGTCCATAGCCATGGTCCTAACCAAACTAAATTTACCCCTACGACTCAGGCTTGCGTGTTTGTTGGATATCTTCTACACCAAAGAGGCTATAAATGCTTTCATCCATCTTCATGTAAGTACTTTGTTACCATGAATGTCAACTTTATTGAAGATGGTCCTTTTTTTCTCGTTAGCCTACTTCAGGGAGAGAATATGAGTGAAGAATCTAACTATATGCTTCCTTTAGAGTCTTCTTATCCTACTGTGGTTACCCTACCTGACCCTAGCCCTCACAGTACAATCATACCAACAAATCAAGTTCCTTGATAAATCCACTATAAGAGGAATCTCAGAAAGGAAGTTGAGTCTCCTATTGTTCATACGGCTCCAATCCAGGATCCTAAATCAATAAGAGATCAAGGCATGACTGATTCAATTAATTCACCTAGTAATATCAGTATTGATGAGGCCATG

mRNA sequence

ATGCCTTCCCGTGTCCTTCACTTCCAGACACCGTTAGATTGCCTTAAAGAATCTTATCTCTCCACTCATCTCATCCCTGATGTTCCCCTTTGGGTCTTCGACTGCACTACCTATGTCCATAGCCATGGTCCTAACCAAACTAAATTTACCCCTACGACTCAGGCTTGCGTGTTTGTTGGATATCTTCTACACCAAAGAGGCTATAAATGCTTTCATCCATCTTCATGTAAGTACTTTGTTACCATGAATGTCAACTTTATTGAAGATGGTCCTTTTTTTCTCGTTAGCCTACTTCAGGGAGAGAATATGAGTGAAGAATCTAACTATATGCTTCCTTTAGAGTCTTCTTATCCTACTGTGGTTACCCTACCTGACCCTAGCCCTCACAGTACAATCATACCAACAAATCAAGTTCCTTGA

Coding sequence (CDS)

ATGCCTTCCCGTGTCCTTCACTTCCAGACACCGTTAGATTGCCTTAAAGAATCTTATCTCTCCACTCATCTCATCCCTGATGTTCCCCTTTGGGTCTTCGACTGCACTACCTATGTCCATAGCCATGGTCCTAACCAAACTAAATTTACCCCTACGACTCAGGCTTGCGTGTTTGTTGGATATCTTCTACACCAAAGAGGCTATAAATGCTTTCATCCATCTTCATGTAAGTACTTTGTTACCATGAATGTCAACTTTATTGAAGATGGTCCTTTTTTTCTCGTTAGCCTACTTCAGGGAGAGAATATGAGTGAAGAATCTAACTATATGCTTCCTTTAGAGTCTTCTTATCCTACTGTGGTTACCCTACCTGACCCTAGCCCTCACAGTACAATCATACCAACAAATCAAGTTCCTTGA
Homology
[Close]
BLAST of CSPI05G27980 vs. TrEMBL
Match: E5GBA9_CUCME (Reverse transcriptase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.0e-32
Identity = 67/92 (72.83%), Postives = 73/92 (79.35%), Query Frame = 1 

Query: 1  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVG 60
          M SR+LH QTPL+CLKESY ST LI +VPL VF CT YVHS GPNQTKFTP  QAC FV 
Sbjct: 1  MSSRILHLQTPLECLKESYPSTRLISEVPLCVFGCTAYVHSFGPNQTKFTPQAQACEFVE 60

Query: 61 YLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPF 93
          Y LHQR YKCF+PSS KYFVTMNV F E+ P+
Sbjct: 61 YPLHQRCYKCFYPSSRKYFVTMNVTFCEERPY 92

[Close]
BLAST of CSPI05G27980 vs. TrEMBL
Match: A5ARL5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014719 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-22
Identity = 60/141 (42.55%), Postives = 83/141 (58.87%), Query Frame = 1 

Query: 1   MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVG 60
           MPSR+L  +TPLD L +SY ++ L  ++PL +F CT++VH   P ++K  P    CV + 
Sbjct: 1   MPSRILIMKTPLDTLLQSYPNSRLHQNLPLIIFGCTSFVHYIAPGRSKLEPRAIKCVLLX 60

Query: 61  YLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQGENMSEE--SNYMLPLESSYP 120
           Y   + GYKCF P S K F+TM+V F E  P+F ++ LQGENMSE+       P   + P
Sbjct: 61  YPSTKHGYKCFDPISGKLFITMDVKFFEKKPYFPITTLQGENMSEDCFQETSSPQLPNSP 120

Query: 121 TVVTLPDPSPHSTIIPTNQVP 140
               LP   P S II  ++VP
Sbjct: 121 PADQLPPLLPESPIITESRVP 141

[Close]
BLAST of CSPI05G27980 vs. TrEMBL
Match: A5BR63_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035056 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.6e-22
Identity = 45/105 (42.86%), Postives = 76/105 (72.38%), Query Frame = 1 

Query: 1   MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVG 60
           MP+++L + TPL+CLK+ +  + +  ++PL +F CT YVH    +++K  P  + CVFVG
Sbjct: 26  MPTKILQYTTPLECLKKVFPESRINSELPLKIFGCTAYVHIPKRSRSKLDPRAEKCVFVG 85

Query: 61  YLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQGENMSE 106
           Y L+++GYKCF+P + +++ TM+V+F+E+ P+F  +LLQGE + E
Sbjct: 86  YTLNKKGYKCFNPLTKRFYTTMDVSFMENVPYFTKNLLQGEKLVE 130

[Close]
BLAST of CSPI05G27980 vs. TrEMBL
Match: A5BNN1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000843 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.6e-22
Identity = 45/105 (42.86%), Postives = 76/105 (72.38%), Query Frame = 1 

Query: 1   MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVG 60
           MP+++L + TPL+CLK+ +  + +  ++PL +F CTTYVH    +++K  P  + CVFVG
Sbjct: 549 MPTKILQYTTPLECLKKVFPESRINSELPLKIFGCTTYVHIPKRSRSKLDPRAEKCVFVG 608

Query: 61  YLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQGENMSE 106
           Y  +++GYKCF+P + +++ TM+V+F+E+ P+F  +LLQGE + E
Sbjct: 609 YTPNKKGYKCFNPLTKRFYTTMDVSFMENVPYFTKNLLQGEKLVE 653

[Close]
BLAST of CSPI05G27980 vs. TrEMBL
Match: A5AKX1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028559 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-21
Identity = 45/105 (42.86%), Postives = 75/105 (71.43%), Query Frame = 1 

Query: 1   MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVG 60
           MP+++L + TPL+CLK+ +  + +  ++PL +F CT YVH    +++K  P  + CVFVG
Sbjct: 195 MPTKILQYTTPLECLKKVFPESRINSELPLKIFGCTAYVHIPKRSRSKLDPRAEKCVFVG 254

Query: 61  YLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQGENMSE 106
           Y  +++GYKCF+P + +++ TM+V+FIE+ P+F  +LLQGE + E
Sbjct: 255 YTPNKKGYKCFNPLTKRFYTTMDVSFIENVPYFTKNLLQGEKLVE 299

[Close]
BLAST of CSPI05G27980 vs. NCBI nr
Match: gi|307135886|gb|ADN33751.1| (reverse transcriptase [Cucumis melo subsp. melo])

HSP 1 Score: 145.2 bits (365), Expect = 8.6e-32
Identity = 67/92 (72.83%), Postives = 73/92 (79.35%), Query Frame = 1 

Query: 1  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVG 60
          M SR+LH QTPL+CLKESY ST LI +VPL VF CT YVHS GPNQTKFTP  QAC FV 
Sbjct: 1  MSSRILHLQTPLECLKESYPSTRLISEVPLCVFGCTAYVHSFGPNQTKFTPQAQACEFVE 60

Query: 61 YLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPF 93
          Y LHQR YKCF+PSS KYFVTMNV F E+ P+
Sbjct: 61 YPLHQRCYKCFYPSSRKYFVTMNVTFCEERPY 92

[Close]
BLAST of CSPI05G27980 vs. NCBI nr
Match: gi|147857967|emb|CAN80367.1| (hypothetical protein VITISV_014719 [Vitis vinifera])

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-22
Identity = 60/141 (42.55%), Postives = 83/141 (58.87%), Query Frame = 1 

Query: 1   MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVG 60
           MPSR+L  +TPLD L +SY ++ L  ++PL +F CT++VH   P ++K  P    CV + 
Sbjct: 1   MPSRILIMKTPLDTLLQSYPNSRLHQNLPLIIFGCTSFVHYIAPGRSKLEPRAIKCVLLX 60

Query: 61  YLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQGENMSEE--SNYMLPLESSYP 120
           Y   + GYKCF P S K F+TM+V F E  P+F ++ LQGENMSE+       P   + P
Sbjct: 61  YPSTKHGYKCFDPISGKLFITMDVKFFEKKPYFPITTLQGENMSEDCFQETSSPQLPNSP 120

Query: 121 TVVTLPDPSPHSTIIPTNQVP 140
               LP   P S II  ++VP
Sbjct: 121 PADQLPPLLPESPIITESRVP 141

[Close]
BLAST of CSPI05G27980 vs. NCBI nr
Match: gi|147839950|emb|CAN70453.1| (hypothetical protein VITISV_035056 [Vitis vinifera])

HSP 1 Score: 112.1 bits (279), Expect = 8.0e-22
Identity = 45/105 (42.86%), Postives = 76/105 (72.38%), Query Frame = 1 

Query: 1   MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVG 60
           MP+++L + TPL+CLK+ +  + +  ++PL +F CT YVH    +++K  P  + CVFVG
Sbjct: 26  MPTKILQYTTPLECLKKVFPESRINSELPLKIFGCTAYVHIPKRSRSKLDPRAEKCVFVG 85

Query: 61  YLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQGENMSE 106
           Y L+++GYKCF+P + +++ TM+V+F+E+ P+F  +LLQGE + E
Sbjct: 86  YTLNKKGYKCFNPLTKRFYTTMDVSFMENVPYFTKNLLQGEKLVE 130

[Close]
BLAST of CSPI05G27980 vs. NCBI nr
Match: gi|147855745|emb|CAN79134.1| (hypothetical protein VITISV_000843 [Vitis vinifera])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 45/105 (42.86%), Postives = 76/105 (72.38%), Query Frame = 1 

Query: 1   MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVG 60
           MP+++L + TPL+CLK+ +  + +  ++PL +F CTTYVH    +++K  P  + CVFVG
Sbjct: 549 MPTKILQYTTPLECLKKVFPESRINSELPLKIFGCTTYVHIPKRSRSKLDPRAEKCVFVG 608

Query: 61  YLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQGENMSE 106
           Y  +++GYKCF+P + +++ TM+V+F+E+ P+F  +LLQGE + E
Sbjct: 609 YTPNKKGYKCFNPLTKRFYTTMDVSFMENVPYFTKNLLQGEKLVE 653

[Close]
BLAST of CSPI05G27980 vs. NCBI nr
Match: gi|147819777|emb|CAN76196.1| (hypothetical protein VITISV_041073 [Vitis vinifera])

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-21
Identity = 59/136 (43.38%), Postives = 82/136 (60.29%), Query Frame = 1 

Query: 1   MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVG 60
           MP+R+L+F+TPL           L   +PL +F CTT+VH H  N+ K  P  + CVFVG
Sbjct: 694 MPTRILNFKTPLQVFTNCNPIFRLSSTLPLKIFGCTTFVHIHDHNRGKLDPRARKCVFVG 753

Query: 61  YLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQGENMSEESNYMLPLESSYPTV 120
           Y   Q+GYKCF P S K FVTM+V F E  PFF  + LQGE+ SE+S+ +  +E +    
Sbjct: 754 YAPTQKGYKCFDPISKKLFVTMDVTFFESKPFF-ATHLQGESTSEDSD-LFKIEKT---- 813

Query: 121 VTLPDPSPHSTIIPTN 137
              P P+P++ + P+N
Sbjct: 814 ---PTPNPNNLLEPSN 820

The following BLAST results are available for this feature:
BLAST of CSPI05G27980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G27980 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBA9_CUCME6.0e-3272.83Reverse transcriptase OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5ARL5_VITVI1.9e-2242.55Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014719 PE=4 SV=1[more]
A5BR63_VITVI5.6e-2242.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035056 PE=4 SV=1[more]
A5BNN1_VITVI9.6e-2242.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000843 PE=4 SV=1[more]
A5AKX1_VITVI1.6e-2142.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028559 PE=4 SV=1[more]
BLAST of CSPI05G27980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G27980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135886|gb|ADN33751.1|8.6e-3272.83reverse transcriptase [Cucumis melo subsp. melo][more]
gi|147857967|emb|CAN80367.1|2.8e-2242.55hypothetical protein VITISV_014719 [Vitis vinifera][more]
gi|147839950|emb|CAN70453.1|8.0e-2242.86hypothetical protein VITISV_035056 [Vitis vinifera][more]
gi|147855745|emb|CAN79134.1|1.4e-2142.86hypothetical protein VITISV_000843 [Vitis vinifera][more]
gi|147819777|emb|CAN76196.1|2.3e-2143.38hypothetical protein VITISV_041073 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G27980.1CSPI05G27980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G27980Watermelon (97103) v2cpiwmbB413
CSPI05G27980Wax gourdcpiwgoB523
CSPI05G27980Cucumber (Gy14) v1cgycpiB002
CSPI05G27980Cucumber (Chinese Long) v2cpicuB239
CSPI05G27980Watermelon (Charleston Gray)cpiwcgB421
CSPI05G27980Bottle gourd (USVL1VR-Ls)cpilsiB367
CSPI05G27980Cucumber (Gy14) v2cgybcpiB225
CSPI05G27980Cucumber (Chinese Long) v3cpicucB284