CSPI05G27710 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G27710
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 26147670 .. 26148653 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACATTGATATAAATTCTCAAAATGATCGTATATATTATATTCAAAACAATATGAACTATATGTGGACAAAGAAAATGGGCTGGGAAAGGTTTCATCTATCTATACAAATCATTTTAGTTAAAACAAAAAATCAAAAAATGGGAGAAACTATGAACTACTCCGAAACTACAGCAGTGCACTCAAACCTGGCATCTCACTTTCTGCCGTCGAAGAATCATGCCAAAACCCATTCAACATTTCTGCATAATTCCCATCCAAATTCTGCAGAAACGCCAATTCATCCAGCGGACTCACACCCCCAACCCCCGCTTCCACCTTTCCTCCCACCATTACATCCTTCTCGCCCATCACTTGGTGGTCAACGAACGACGCCGATGCCCACCATTCTCCATTCCCATCACTGCCACCCGATGCCATCTCCATGAATCTCTCAGCATCCGAGTCCTGACCGGTGAGTTTCTGGACAAGAGATCGAAACTTCGAGGCGCTGGTTTTCACCTTCATCGGACTCGAAATGTACACGACTTTGAAACCCGCCCCCGCCGATTTCTTGCTTCTCTTTGCCTGTTTTTTGCCTGTTACAATCATCGGGAATTTTCTCCTTTTTTTCACCCTTCCAATGGAGAGGTAATCAGAAGTTTTATAATTTGAGTGATTTTGGAGTGGAAGATATATGGTGTGTGGTGGTGTATTTATATATAAGGATGTACGGATTGGAGAATTTTGCTTGGGAAACAAACAAGCGGCGGTTTCCCGGAAATGGGTTGGGTTGGAAATTTGAAGGGAAAGGAAAAATTCCCAATGAAAACGAAGCAAAGAGAAAATTGGAAAAAGGTATAGAACCTTCTTTCTTTTCAGATGTCCTTAAAAGGACCCCTAATCCCCCACACCCAAATGGAACAAAATAATATATATAAATACAATCATTTTTTTCCAACAATTATAATTTAAGTTATTTGAACCTAAATATGGTTAGATCAACT

mRNA sequence

ATGCCAAAACCCATTCAACATTTCTGCATAATTCCCATCCAAATTCTGCAGAAACGCCAATTCATCCAGCGGACTCACACCCCCAACCCCCGCTTCCACCTTTCCTCCCACCATTACATCCTTCTCGCCCATCACTTGGTGGTCAACGAACGACGCCGATGCCCACCATTCTCCATTCCCATCACTGCCACCCGATGCCATCTCCATGAATCTCTCAGCATCCGAGTCCTGACCGGTGAGTTTCTGGACAAGAGATCGAAACTTCGAGGCGCTGGTTTTCACCTTCATCGGACTCGAAATGTACACGACTTTGAAACCCGCCCCCGCCGATTTCTTGCTTCTCTTTGCCTGTTTTTTGCCTGTTACAATCATCGGGAATTTTCTCCTTTTTTTCACCCTTCCAATGGAGAGGTAATCAGAAGTTTTATAATTTGA

Coding sequence (CDS)

ATGCCAAAACCCATTCAACATTTCTGCATAATTCCCATCCAAATTCTGCAGAAACGCCAATTCATCCAGCGGACTCACACCCCCAACCCCCGCTTCCACCTTTCCTCCCACCATTACATCCTTCTCGCCCATCACTTGGTGGTCAACGAACGACGCCGATGCCCACCATTCTCCATTCCCATCACTGCCACCCGATGCCATCTCCATGAATCTCTCAGCATCCGAGTCCTGACCGGTGAGTTTCTGGACAAGAGATCGAAACTTCGAGGCGCTGGTTTTCACCTTCATCGGACTCGAAATGTACACGACTTTGAAACCCGCCCCCGCCGATTTCTTGCTTCTCTTTGCCTGTTTTTTGCCTGTTACAATCATCGGGAATTTTCTCCTTTTTTTCACCCTTCCAATGGAGAGGTAATCAGAAGTTTTATAATTTGA
Homology
[Close]
BLAST of CSPI05G27710 vs. TrEMBL
Match: A0A0A0KRR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623920 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 4.2e-81
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MPKPIQHFCIIPIQILQKRQFIQRTHTPNPRFHLSSHHYILLAHHLVVNERRRCPPFSIP 60
           MPKPIQHFCIIPIQILQKRQFIQRTHTPNPRFHLSSHHYILLAHHLVVNERRRCPPFSIP
Sbjct: 1   MPKPIQHFCIIPIQILQKRQFIQRTHTPNPRFHLSSHHYILLAHHLVVNERRRCPPFSIP 60

Query: 61  ITATRCHLHESLSIRVLTGEFLDKRSKLRGAGFHLHRTRNVHDFETRPRRFLASLCLFFA 120
           ITATRCHLHESLSIRVLTGEFLDKRSKLRGAGFHLHRTRNVHDFETRPRRFLASLCLFFA
Sbjct: 61  ITATRCHLHESLSIRVLTGEFLDKRSKLRGAGFHLHRTRNVHDFETRPRRFLASLCLFFA 120

Query: 121 CYNHREFSPFFHPSNGEVIRSFII 145
           CYNHREFSPFFHPSNGEVIRSFII
Sbjct: 121 CYNHREFSPFFHPSNGEVIRSFII 144

[Close]
BLAST of CSPI05G27710 vs. NCBI nr
Match: gi|700197153|gb|KGN52330.1| (hypothetical protein Csa_5G623920 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 6.1e-81
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MPKPIQHFCIIPIQILQKRQFIQRTHTPNPRFHLSSHHYILLAHHLVVNERRRCPPFSIP 60
           MPKPIQHFCIIPIQILQKRQFIQRTHTPNPRFHLSSHHYILLAHHLVVNERRRCPPFSIP
Sbjct: 1   MPKPIQHFCIIPIQILQKRQFIQRTHTPNPRFHLSSHHYILLAHHLVVNERRRCPPFSIP 60

Query: 61  ITATRCHLHESLSIRVLTGEFLDKRSKLRGAGFHLHRTRNVHDFETRPRRFLASLCLFFA 120
           ITATRCHLHESLSIRVLTGEFLDKRSKLRGAGFHLHRTRNVHDFETRPRRFLASLCLFFA
Sbjct: 61  ITATRCHLHESLSIRVLTGEFLDKRSKLRGAGFHLHRTRNVHDFETRPRRFLASLCLFFA 120

Query: 121 CYNHREFSPFFHPSNGEVIRSFII 145
           CYNHREFSPFFHPSNGEVIRSFII
Sbjct: 121 CYNHREFSPFFHPSNGEVIRSFII 144

The following BLAST results are available for this feature:
BLAST of CSPI05G27710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G27710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRR6_CUCSA4.2e-81100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623920 PE=4 SV=1[more]
BLAST of CSPI05G27710 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G27710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197153|gb|KGN52330.1|6.1e-81100.00hypothetical protein Csa_5G623920 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G27710.1CSPI05G27710.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G27710Csa5G623920Cucumber (Chinese Long) v2cpicuB239
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G27710Silver-seed gourdcarcpiB0758
CSPI05G27710Silver-seed gourdcarcpiB0877
CSPI05G27710Cucumber (Chinese Long) v3cpicucB284
CSPI05G27710Watermelon (97103) v2cpiwmbB397
CSPI05G27710Wax gourdcpiwgoB519
CSPI05G27710Cucumber (Gy14) v1cgycpiB464
CSPI05G27710Cucurbita maxima (Rimu)cmacpiB423
CSPI05G27710Cucurbita maxima (Rimu)cmacpiB755
CSPI05G27710Cucurbita moschata (Rifu)cmocpiB411
CSPI05G27710Cucurbita moschata (Rifu)cmocpiB745
CSPI05G27710Melon (DHL92) v3.5.1cpimeB369
CSPI05G27710Watermelon (Charleston Gray)cpiwcgB408
CSPI05G27710Watermelon (97103) v1cpiwmB404
CSPI05G27710Cucurbita pepo (Zucchini)cpecpiB036
CSPI05G27710Cucurbita pepo (Zucchini)cpecpiB439
CSPI05G27710Bottle gourd (USVL1VR-Ls)cpilsiB372
CSPI05G27710Melon (DHL92) v3.6.1cpimedB363
CSPI05G27710Cucumber (Gy14) v2cgybcpiB225