CSPI05G27680 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G27680
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionGlutamate receptor 2 plant
LocationChr5 : 26119635 .. 26120283 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATTAGGCATAAGCAGAAAAATGATAAACATCGCCATTATCAAACCAACTAGAAACAATTAATAATGAAGTGCACTTTAATTTTTCTACACATTTCTTTCAATCATTCATTTTTTCTACCTCCAATTTAGTAAAAAATCTCTCTTAATTTAGCCTATGGAAAAAGGAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAACACAAGCCGCCGGTTGCCGGAAGGCACAATGTTGGTCGAATTCCGTGTCATATAGCGATGTTACCGACGGATACATCTGAAGGGGAAAAGGCGAGGAGAAGAAGCGCCGCCATGATCCCAACTGGGAAGAAAAGAAGCACAAGTGGGGGCGGAGGCAGGGGTGGAAGAACCAACGGCAGAACGACCATGGAAACCGCAACGGCGGCGAGGAGGAGAACGGACACTAAGTTGAAGCAACGTACCATAGCAACTTTCCGGCAGGCGGAGATTTGATCATGTCCTTGAGCGGCGGCAATGCGTGGGAAAAGAAATCCGGTGAGGCGGCGTGGATTTTGGAATTTGGATGGGGAGGTTCGGAGGCGGAAGAATTAGGGGTGGGAGTTTATATAGCTTCACGCCCCTCTGCTTTATTAAAAGAACAAAATTACCTTTTCACCCC

mRNA sequence

ATGGAAAAAGGAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAACACAAGCCGCCGGTTGCCGGAAGGCACAATGTTGGTCGAATTCCGTGTCATATAGCGATGTTACCGACGGATACATCTGAAGGGGAAAAGGCGAGGAGAAGAAGCGCCGCCATGATCCCAACTGGGAAGAAAAGAAGCACAAGTGGGGGCGGAGGCAGGGGTGGAAGAACCAACGGCAGAACGACCATGGAAACCGCAACGGCGGCGAGGAGGAGAACGGACACTAAGTTGAAGCAACGTACCATAGCAACTTTCCGGCAGGCGGAGATTTGA

Coding sequence (CDS)

ATGGAAAAAGGAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAACACAAGCCGCCGGTTGCCGGAAGGCACAATGTTGGTCGAATTCCGTGTCATATAGCGATGTTACCGACGGATACATCTGAAGGGGAAAAGGCGAGGAGAAGAAGCGCCGCCATGATCCCAACTGGGAAGAAAAGAAGCACAAGTGGGGGCGGAGGCAGGGGTGGAAGAACCAACGGCAGAACGACCATGGAAACCGCAACGGCGGCGAGGAGGAGAACGGACACTAAGTTGAAGCAACGTACCATAGCAACTTTCCGGCAGGCGGAGATTTGA
Homology
[Close]
BLAST of CSPI05G27680 vs. TrEMBL
Match: A0A0A0KWY2_CUCSA (Glutamate receptor 2 plant OS=Cucumis sativus GN=Csa_5G623890 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.4e-27
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 38  MLPTDTSEGEKARRRSAAMIPTGKKRSTSGGGGRGGRTNGRTTMETATAARRRTDTKLKQ 97
           MLPTDTSEGEKARRRSAAMIPTGKKRSTSGGGGRGGRTNGRTTMETATAARRRTDTKLKQ
Sbjct: 1   MLPTDTSEGEKARRRSAAMIPTGKKRSTSGGGGRGGRTNGRTTMETATAARRRTDTKLKQ 60

Query: 98  RTIATFRQAEI 109
           RTIATF+QAEI
Sbjct: 61  RTIATFQQAEI 71

[Close]
BLAST of CSPI05G27680 vs. NCBI nr
Match: gi|700197149|gb|KGN52326.1| (Glutamate receptor 2 plant [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 4.9e-27
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 38  MLPTDTSEGEKARRRSAAMIPTGKKRSTSGGGGRGGRTNGRTTMETATAARRRTDTKLKQ 97
           MLPTDTSEGEKARRRSAAMIPTGKKRSTSGGGGRGGRTNGRTTMETATAARRRTDTKLKQ
Sbjct: 1   MLPTDTSEGEKARRRSAAMIPTGKKRSTSGGGGRGGRTNGRTTMETATAARRRTDTKLKQ 60

Query: 98  RTIATFRQAEI 109
           RTIATF+QAEI
Sbjct: 61  RTIATFQQAEI 71

The following BLAST results are available for this feature:
BLAST of CSPI05G27680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G27680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWY2_CUCSA3.4e-2798.59Glutamate receptor 2 plant OS=Cucumis sativus GN=Csa_5G623890 PE=4 SV=1[more]
BLAST of CSPI05G27680 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G27680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197149|gb|KGN52326.1|4.9e-2798.59Glutamate receptor 2 plant [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G27680.1CSPI05G27680.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G27680CsaV3_5G036830Cucumber (Chinese Long) v3cpicucB284
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G27680Melon (DHL92) v3.6.1cpimedB363
CSPI05G27680Cucumber (Gy14) v2cgybcpiB225
CSPI05G27680Silver-seed gourdcarcpiB0758
CSPI05G27680Silver-seed gourdcarcpiB0877
CSPI05G27680Watermelon (97103) v2cpiwmbB397
CSPI05G27680Wax gourdcpiwgoB519
CSPI05G27680Cucumber (Gy14) v1cgycpiB464
CSPI05G27680Cucurbita maxima (Rimu)cmacpiB423
CSPI05G27680Cucurbita maxima (Rimu)cmacpiB755
CSPI05G27680Cucurbita moschata (Rifu)cmocpiB411
CSPI05G27680Cucurbita moschata (Rifu)cmocpiB745
CSPI05G27680Cucumber (Chinese Long) v2cpicuB239
CSPI05G27680Melon (DHL92) v3.5.1cpimeB369
CSPI05G27680Watermelon (Charleston Gray)cpiwcgB408
CSPI05G27680Watermelon (97103) v1cpiwmB404
CSPI05G27680Cucurbita pepo (Zucchini)cpecpiB036
CSPI05G27680Cucurbita pepo (Zucchini)cpecpiB439
CSPI05G27680Bottle gourd (USVL1VR-Ls)cpilsiB372