CSPI05G27140 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G27140
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 25765517 .. 25766285 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCGAGCCATACTGACAGTGGACTCCCAACGACCTCTACCGCGCCCATCAATTTTCCACTTCCTTCGATCTCATTTTCCTCTCGAAATCCTCAATTTCCCAATCGGATGTGGTATTCTCTTTTCTTCCTCGACCCCTCTATCTATCAATTCCTCACTGTTTCATGAAACTGTTCCAATTGTAGTCCACTGTGTAAGTTTTCCCCTGTTTTCCTTTTGCAATCATTACCTCAACTCTCGGATCTTTGTTTTTATTTGAAGAAATATTTGACGCTATTACGGGAAGAAGAGGAAAAGAGAAATGTTGGTGGTTGGGATAGAAGTAGAATTGTGGTAAGAGTGTAATGTGATGGGGTCCAAAGAGAAAAGTATAGGACAGGGAGTTTAATAGATCGGTTGAGCTGGGTCTATGTTTTTTTTTTTTTTTTTTTCACTATGTAACATGCAATTTCTTCATGTTTGTTTCATTGTATGTGTTGTGGCTGTGCCTACTGGTTTGCTTAAGGCGACCATGGACGATTAGATTTGGAATTTTGCTTCTGACTATATTTTATTGAGATGTAGCTCTAAGCTGAAGAATGAGGGAGGCAATGAATCTGTCGTTTGATGCTGTGTTTTTTATATTATGCATCGAATGCACATTTTTTTTTCTATGCCTTTGTTATGAATCAATTTTCAGTTTATGAACTAGTGAATCAATTTGGAGATATCTTACTGACTGCAGTTCCCTTGATTTCTGTCCCCTGCAGACGTTTTCATTGTGTTAG

mRNA sequence

ATGACGCGAGCCATACTGACAGTGGACTCCCAACGACCTCTACCGCGCCCATCAATTTTCCACTTCCTTCGATCTCATTTTCCTCTCGAAATCCTCAATTTCCCAATCGGATGTGGTATTCTCTTTTCTTCCTCGACCCCTCTATCTATCAATTCCTCACTGTTTCATGAAACTGTTCCAATTGTAGTCCACTGTACGTTTTCATTGTGTTAG

Coding sequence (CDS)

ATGACGCGAGCCATACTGACAGTGGACTCCCAACGACCTCTACCGCGCCCATCAATTTTCCACTTCCTTCGATCTCATTTTCCTCTCGAAATCCTCAATTTCCCAATCGGATGTGGTATTCTCTTTTCTTCCTCGACCCCTCTATCTATCAATTCCTCACTGTTTCATGAAACTGTTCCAATTGTAGTCCACTGTACGTTTTCATTGTGTTAG
Homology
[Close]
BLAST of CSPI05G27140 vs. TrEMBL
Match: A0A0A0KRJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622850 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MTRAILTVDSQRPLPRPSIFHFLRSHFPLEILNFPIGCGILFSSSTPLSINSSLFHETVP 60
          MTRAILTVDSQRPLPRPSIFHFLRSHFPLEILNFPIGCGILFSSSTPLSINSSLFHETVP
Sbjct: 1  MTRAILTVDSQRPLPRPSIFHFLRSHFPLEILNFPIGCGILFSSSTPLSINSSLFHETVP 60

Query: 61 IVVHCTFSLC 71
          IVVHCTFSLC
Sbjct: 61 IVVHCTFSLC 70

[Close]
BLAST of CSPI05G27140 vs. NCBI nr
Match: gi|700197093|gb|KGN52270.1| (hypothetical protein Csa_5G622850 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MTRAILTVDSQRPLPRPSIFHFLRSHFPLEILNFPIGCGILFSSSTPLSINSSLFHETVP 60
          MTRAILTVDSQRPLPRPSIFHFLRSHFPLEILNFPIGCGILFSSSTPLSINSSLFHETVP
Sbjct: 1  MTRAILTVDSQRPLPRPSIFHFLRSHFPLEILNFPIGCGILFSSSTPLSINSSLFHETVP 60

Query: 61 IVVHCTFSLC 71
          IVVHCTFSLC
Sbjct: 61 IVVHCTFSLC 70

The following BLAST results are available for this feature:
BLAST of CSPI05G27140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G27140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRJ7_CUCSA1.0e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622850 PE=4 SV=1[more]
BLAST of CSPI05G27140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G27140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197093|gb|KGN52270.1|1.5e-32100.00hypothetical protein Csa_5G622850 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G27140.1CSPI05G27140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G27140Csa5G622850Cucumber (Chinese Long) v2cpicuB239
CSPI05G27140CsaV3_5G036270Cucumber (Chinese Long) v3cpicucB284
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G27140Wild cucumber (PI 183967)cpicpiB122
CSPI05G27140Wild cucumber (PI 183967)cpicpiB185
CSPI05G27140Cucumber (Gy14) v1cgycpiB199
CSPI05G27140Cucumber (Gy14) v1cgycpiB464
CSPI05G27140Cucumber (Gy14) v1cgycpiB569
CSPI05G27140Cucurbita maxima (Rimu)cmacpiB309
CSPI05G27140Cucurbita maxima (Rimu)cmacpiB423
CSPI05G27140Cucurbita maxima (Rimu)cmacpiB743
CSPI05G27140Cucurbita maxima (Rimu)cmacpiB755
CSPI05G27140Cucurbita moschata (Rifu)cmocpiB302
CSPI05G27140Cucurbita moschata (Rifu)cmocpiB411
CSPI05G27140Cucurbita moschata (Rifu)cmocpiB736
CSPI05G27140Cucurbita moschata (Rifu)cmocpiB745
CSPI05G27140Cucumber (Chinese Long) v2cpicuB259
CSPI05G27140Melon (DHL92) v3.5.1cpimeB369
CSPI05G27140Melon (DHL92) v3.5.1cpimeB390
CSPI05G27140Melon (DHL92) v3.5.1cpimeB396
CSPI05G27140Watermelon (Charleston Gray)cpiwcgB366
CSPI05G27140Watermelon (Charleston Gray)cpiwcgB412
CSPI05G27140Watermelon (Charleston Gray)cpiwcgB432
CSPI05G27140Watermelon (97103) v1cpiwmB380
CSPI05G27140Watermelon (97103) v1cpiwmB387
CSPI05G27140Watermelon (97103) v1cpiwmB410
CSPI05G27140Watermelon (97103) v1cpiwmB443
CSPI05G27140Cucurbita pepo (Zucchini)cpecpiB036
CSPI05G27140Cucurbita pepo (Zucchini)cpecpiB184
CSPI05G27140Cucurbita pepo (Zucchini)cpecpiB425
CSPI05G27140Cucurbita pepo (Zucchini)cpecpiB439
CSPI05G27140Bottle gourd (USVL1VR-Ls)cpilsiB372
CSPI05G27140Bottle gourd (USVL1VR-Ls)cpilsiB393
CSPI05G27140Melon (DHL92) v3.6.1cpimedB363
CSPI05G27140Melon (DHL92) v3.6.1cpimedB384
CSPI05G27140Cucumber (Gy14) v2cgybcpiB225
CSPI05G27140Cucumber (Gy14) v2cgybcpiB286
CSPI05G27140Silver-seed gourdcarcpiB0299
CSPI05G27140Silver-seed gourdcarcpiB0522
CSPI05G27140Silver-seed gourdcarcpiB0723
CSPI05G27140Silver-seed gourdcarcpiB0877
CSPI05G27140Watermelon (97103) v2cpiwmbB402
CSPI05G27140Watermelon (97103) v2cpiwmbB425
CSPI05G27140Wax gourdcpiwgoB492
CSPI05G27140Wax gourdcpiwgoB506