CSPI05G26300 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G26300
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 25201315 .. 25201866 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGAAAATGGGAAGAAGAAAGATTGCATTGATTTTGATTCTGATCTATTCATCTATGCTGCCTTTTTCATCTGCTTTCAAACAACTCTTCCTAACCGGTCATTTTCTTTATTCTCTCCTTTTTTTCTTTCGAAAGATTCGAATTTTCCACCTTAGAATGTCATGTCAAATTTGCCTAATTATATCGTAGGGTTACTATTTTTTGTTCTGGGTAACAATTTCTTGATATATTTTGGACTTTAGAGACAATCTAAGTGTCTAATAGCTCGATCATTAACCTATATGTGTGTACTGCAGACAACAGTAATCACCAAGAAAGTGAGCATATGGAAAAACAATATGGTAGAAGATACAATGTAGAGGGTCGACATGGTTATACAAATGGGATCCCAACACATATAGCAATTACCCGCGGAGGAGGAAGAGGCGGCGGCGGCGGCGGCAGAGGTAACGGTGCCGCAGGAATTCACGATCAAAACTGCATGGAGTTGATAGCAGCTGCAGTTTCCATATCAGTTGCATACTTGTGTGGACTTATTTGATATATGAAGA

mRNA sequence

ATGGGAAGAAGAAAGATTGCATTGATTTTGATTCTGATCTATTCATCTATGCTGCCTTTTTCATCTGCTTTCAAACAACTCTTCCTAACCGACAACAGTAATCACCAAGAAAGTGAGCATATGGAAAAACAATATGGTAGAAGATACAATGTAGAGGGTCGACATGGTTATACAAATGGGATCCCAACACATATAGCAATTACCCGCGGAGGAGGAAGAGGCGGCGGCGGCGGCGGCAGAGGTAACGGTGCCGCAGGAATTCACGATCAAAACTGCATGGAGTTGATAGCAGCTGCAGTTTCCATATCAGTTGCATACTTGTGTGGACTTATTTGA

Coding sequence (CDS)

ATGGGAAGAAGAAAGATTGCATTGATTTTGATTCTGATCTATTCATCTATGCTGCCTTTTTCATCTGCTTTCAAACAACTCTTCCTAACCGACAACAGTAATCACCAAGAAAGTGAGCATATGGAAAAACAATATGGTAGAAGATACAATGTAGAGGGTCGACATGGTTATACAAATGGGATCCCAACACATATAGCAATTACCCGCGGAGGAGGAAGAGGCGGCGGCGGCGGCGGCAGAGGTAACGGTGCCGCAGGAATTCACGATCAAAACTGCATGGAGTTGATAGCAGCTGCAGTTTCCATATCAGTTGCATACTTGTGTGGACTTATTTGA
Homology
[Close]
BLAST of CSPI05G26300 vs. TrEMBL
Match: A0A0A0KWM3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613630 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.4e-52
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1 

Query: 1   MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNG 60
           MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNG
Sbjct: 1   MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNG 60

Query: 61  IPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMELIAAAVSISVAYLCGLI 112
           IPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCM+ IAAAVSISVAYLCGLI
Sbjct: 61  IPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMKFIAAAVSISVAYLCGLI 111

[Close]
BLAST of CSPI05G26300 vs. TrEMBL
Match: A0A0A0KRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613620 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-38
Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 1 

Query: 1   MGRRKI--ALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYT 60
           MGRR+   ALILILIYSSMLPFS AFKQL LTDNS HQESEHMEKQYGRRYN+EGRHGYT
Sbjct: 1   MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYT 60

Query: 61  NGIPTHIAITRGGGRGG-GGGGRGNGAAGIHDQNCMELIAAAVSISVAYLCGLI 112
           +GIP HIAIT   GRGG G    GNGAAGIHDQNCM+ IAAAVSISVAYLCGLI
Sbjct: 61  DGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIAAAVSISVAYLCGLI 114

[Close]
BLAST of CSPI05G26300 vs. NCBI nr
Match: gi|700197009|gb|KGN52186.1| (hypothetical protein Csa_5G613630 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 7.8e-52
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1 

Query: 1   MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNG 60
           MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNG
Sbjct: 1   MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNG 60

Query: 61  IPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMELIAAAVSISVAYLCGLI 112
           IPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCM+ IAAAVSISVAYLCGLI
Sbjct: 61  IPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMKFIAAAVSISVAYLCGLI 111

[Close]
BLAST of CSPI05G26300 vs. NCBI nr
Match: gi|700197008|gb|KGN52185.1| (hypothetical protein Csa_5G613620 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.7e-38
Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 1 

Query: 1   MGRRKI--ALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYT 60
           MGRR+   ALILILIYSSMLPFS AFKQL LTDNS HQESEHMEKQYGRRYN+EGRHGYT
Sbjct: 1   MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYT 60

Query: 61  NGIPTHIAITRGGGRGG-GGGGRGNGAAGIHDQNCMELIAAAVSISVAYLCGLI 112
           +GIP HIAIT   GRGG G    GNGAAGIHDQNCM+ IAAAVSISVAYLCGLI
Sbjct: 61  DGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIAAAVSISVAYLCGLI 114

[Close]
BLAST of CSPI05G26300 vs. NCBI nr
Match: gi|659091828|ref|XP_008446753.1| (PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-34
Identity = 92/118 (77.97%), Postives = 100/118 (84.75%), Query Frame = 1 

Query: 1   MGRRK----IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHG 60
           MGRR+    IALILILIYSSM+  S AFKQLF+TD+  HQESEHMEK +GRRYN+EGRHG
Sbjct: 1   MGRRRRRTEIALILILIYSSMV-HSFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHG 60

Query: 61  YTNGIPTH-IAITRGGGRGGGGGGRG--NGAAGIHDQNCMELIAAAVSISVAYLCGLI 112
           YTNGIP H I ITRGGGRGGGGGGRG  NGA GIHD+N M+ IAAAVSISVAYLCGLI
Sbjct: 61  YTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI 116

The following BLAST results are available for this feature:
BLAST of CSPI05G26300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G26300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWM3_CUCSA5.4e-5298.20Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613630 PE=4 SV=1[more]
A0A0A0KRC8_CUCSA1.2e-3882.46Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613620 PE=4 SV=1[more]
BLAST of CSPI05G26300 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G26300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197009|gb|KGN52186.1|7.8e-5298.20hypothetical protein Csa_5G613630 [Cucumis sativus][more]
gi|700197008|gb|KGN52185.1|1.7e-3882.46hypothetical protein Csa_5G613620 [Cucumis sativus][more]
gi|659091828|ref|XP_008446753.1|1.9e-3477.97PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G26300.1CSPI05G26300.1mRNA