CSPI05G26280 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G26280
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 25195904 .. 25196488 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTCTTTTAGATAAAATAAATGTTAGAACTATTCTTGATCTTCTATGATTGATAATGAAAATAGTATTTTGAGAGACTAATATATAATTGTATACAATAATGAACAATTGAATTGGTCTGCACAAATGATTTTATGTAATGGTAACGAATTGTCTAAACTGATTTACTATAAACCTCATGCTGATTTCCTGTTCCTCTATTACCCACTCGTCCCCGGTCTCTGCTGTCATCCTCACTGCCACTTCCACATCCACTTCCACCGCCGTCGTCACCACTGCGTCTGTCACCTGCAGTACTTCCACTTGTACCCACACCCACACCTCCACCTCCACCATCACCGTCATCTCCGCCGCCACGTCCCCCTCCACCTCCATCTTATGAAAGGGGCAGTAGAAGAGGGTAAACGAGTACAGAAAGTTTGGGAATTTTAGATGAATTGTTCTTGATTGATTTATTTAGGTAGAGAACATTTTCTTTTATAATGGGAAATGATTTGAACAGAAAAACTTCTATCTTTAACAGTAAAACTGTATAACAACTAAACTGAATCTTTAACAACTAAACTGTTCAAGAAGGCTTTCTTA

mRNA sequence

ATGATTTTATGTAATGGTAACGAATTGTCTAAACTGATTTACTATAAACCTCATGCTGATTTCCTGTTCCTCTATTACCCACTCGTCCCCGGTCTCTGCTGTCATCCTCACTGCCACTTCCACATCCACTTCCACCGCCGTCGTCACCACTGCGTCTGTCACCTGCAGTACTTCCACTTGTACCCACACCCACACCTCCACCTCCACCATCACCGTCATCTCCGCCGCCACGTCCCCCTCCACCTCCATCTTATGAAAGGGGCAGTAGAAGAGGGTAAACGAGTACAGAAAGTTTGGGAATTTTAG

Coding sequence (CDS)

ATGATTTTATGTAATGGTAACGAATTGTCTAAACTGATTTACTATAAACCTCATGCTGATTTCCTGTTCCTCTATTACCCACTCGTCCCCGGTCTCTGCTGTCATCCTCACTGCCACTTCCACATCCACTTCCACCGCCGTCGTCACCACTGCGTCTGTCACCTGCAGTACTTCCACTTGTACCCACACCCACACCTCCACCTCCACCATCACCGTCATCTCCGCCGCCACGTCCCCCTCCACCTCCATCTTATGAAAGGGGCAGTAGAAGAGGGTAAACGAGTACAGAAAGTTTGGGAATTTTAG
Homology
[Close]
BLAST of CSPI05G26280 vs. TrEMBL
Match: A0A0A0KRE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613610 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 

Query: 56  QYFHLYPHPHLHLHHHRHLRRHVPLHLHLMKGAVEEGKRVQKVWEF 102
           +YFHLYPHPHLHLHHHRHLRRHVPLHLHLMKGAVEEGKRVQKVWEF
Sbjct: 42  RYFHLYPHPHLHLHHHRHLRRHVPLHLHLMKGAVEEGKRVQKVWEF 87

[Close]
BLAST of CSPI05G26280 vs. NCBI nr
Match: gi|700197006|gb|KGN52183.1| (hypothetical protein Csa_5G613610 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-17
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 

Query: 56  QYFHLYPHPHLHLHHHRHLRRHVPLHLHLMKGAVEEGKRVQKVWEF 102
           +YFHLYPHPHLHLHHHRHLRRHVPLHLHLMKGAVEEGKRVQKVWEF
Sbjct: 42  RYFHLYPHPHLHLHHHRHLRRHVPLHLHLMKGAVEEGKRVQKVWEF 87

The following BLAST results are available for this feature:
BLAST of CSPI05G26280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G26280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRE7_CUCSA1.0e-1797.83Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613610 PE=4 SV=1[more]
BLAST of CSPI05G26280 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G26280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197006|gb|KGN52183.1|1.5e-1797.83hypothetical protein Csa_5G613610 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G26280.1CSPI05G26280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G26280Cucurbita moschata (Rifu)cmocpiB411
CSPI05G26280Cucurbita moschata (Rifu)cmocpiB745
CSPI05G26280Cucumber (Chinese Long) v2cpicuB239
CSPI05G26280Melon (DHL92) v3.5.1cpimeB369
CSPI05G26280Watermelon (Charleston Gray)cpiwcgB412
CSPI05G26280Watermelon (97103) v1cpiwmB410
CSPI05G26280Cucurbita pepo (Zucchini)cpecpiB036
CSPI05G26280Cucurbita pepo (Zucchini)cpecpiB439
CSPI05G26280Bottle gourd (USVL1VR-Ls)cpilsiB372
CSPI05G26280Melon (DHL92) v3.6.1cpimedB363
CSPI05G26280Cucumber (Gy14) v2cgybcpiB225
CSPI05G26280Silver-seed gourdcarcpiB0877
CSPI05G26280Silver-seed gourdcarcpiB1088
CSPI05G26280Cucumber (Chinese Long) v3cpicucB284
CSPI05G26280Watermelon (97103) v2cpiwmbB402
CSPI05G26280Wax gourdcpiwgoB506
CSPI05G26280Cucumber (Gy14) v1cgycpiB432
CSPI05G26280Cucurbita maxima (Rimu)cmacpiB423
CSPI05G26280Cucurbita maxima (Rimu)cmacpiB755