CSPI05G26270 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G26270
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 25192581 .. 25194321 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCCTTCATTAATTAGTTCCACTGACAGAGAAAAATAGAGAAATAAAATGGGAAGAAGAAGAGGAGAGATGGCATTCATTTTGGTAATTCTTTGTTCATCTATGATGGCTTCCTTTGCTTTCACACAACTCTTCACAATAGGTTCATTTCCTCTCCACTCTCTTTTCTTCTTTTTTTTTTTTCATTTTTAAAGATACTTATTGTCTATATACGGTATGTTCAAATGAGTTTTTTTTTTTTAATTTTATTTATTTCATAATATGTGGAAGTGGAGAAATCAAATCTGGTTGTTTCGAGGATTGATATTTGATCATTAGTTTCTAAATAAGCTCCTTTGATTTTTTTGTTATTCGTTTGTTATAAGAAAAAATATCCATTTTTGTTTTTTTATTTGTAGAATGTGCCTAAGAATTCAAATTTTATGAAGAAGGTTGTAAAGAAAGAATGACAAAACAAGTTTACTTCTGAAATACCAAAAAGAAAAAAAAGTTCATGCCCTCATTCGATTGAGTTTTGAAAAATGTGCTTGTCTTTTCACGATTATTAGTGATTCTCACTCTTTTTAGAAAACATTTGAATATTTAACCAAATTGTAAAAACCAAATCTAGTTCTTAAAACATATCTTCCTTAGTTTACACAATTTAGCTTGGATTTTGATCAACAATCTAGGAAGATACACAACCAAACAAAAAGCGTAGGTATGGATATAGGTTATGCTTACTGAGTTCAATTCCTTAAAAAAAGTTTTCAAACCTATATTAAGTAACTGTTTAATAATCTCGAACACTGTTCAATCATGTGTCTTGTAAATTTATAAGCTAAAAAAATGGTTAATGTATGATATTTTTAAGCTTAGAGTATGTATGGTAACTCATTGTTTATTGTTTTTTAAAAGGCATGTAGATCTAATGACTAATCCACTCCTTTGTTTTTTAATCTAGACAAGTTTTTAAAATTACAAAGAAAAATTCAAAATGAAAAAAAAAAAATCAAAATGTATATTTTGTTTTTAAAACAAAAAACAAAAATCAATTACCAAACATATATGTTTTTGTTTTTGATACACAAAATAAAATAGTTAAAATAGTTATTAAACATGTCCCGACTAAACTAAAAATTAATGTCTCTTTTTTTTTCTTTTTTCTTTATCAAATCCATGCGACAATTATCATAGCCATGATAATGTTTGTATTTTTTTTTAAAATTATGTTTGTATTTTGTAGATTCTAAACAGCAAATAACTGTTAGAGAACACAATAATTCAAGATTTGTTGAACGTCGAGGGGGAGGTAGGGGAGTGATCCCAATATATGTGGCTGGCGCTTCATCAGGCCGTCATGGAAAGCATAGCCACAGCCTTGGAAATCGTCATAACAACTATATGGAGTTTATAATAATTGGTGTTTCCATCTCTATTGCACTTTTGTGTAGATTTATATGATACCCAAACACCTCCCTTCGAAATCCAAAGATCCCCTGTAAGAGGATGGTTTGATTCCAAACCTTATATAATGTGCAATACACCTGTGTATTTAGAATCTTTTATTATGCAATTTACAAGTTACGGTCGTCACAAAGTTAATATTGTGAGACCGGCGTGTACTATTGACGCTTGGATTGAGGAGCATGAGTGTTAGAAGACTAGAAGCTATTGCAAGGAATTTTCCCACATTTATTTATTTATTAAAATAATATTTTGTTCCATATACTTTCAAAGTTTGATCAATGTTAGTTTCTTT

mRNA sequence

ATGGGAAGAAGAAGAGGAGAGATGGCATTCATTTTGGTAATTCTTTGTTCATCTATGATGGCTTCCTTTGCTTTCACACAACTCTTCACAATAGATTCTAAACAGCAAATAACTGTTAGAGAACACAATAATTCAAGATTTGTTGAACGTCGAGGGGGAGGTAGGGGAGTGATCCCAATATATGTGGCTGGCGCTTCATCAGGCCGTCATGGAAAGCATAGCCACAGCCTTGGAAATCGTCATAACAACTATATGGAGTTTATAATAATTGGTGTTTCCATCTCTATTGCACTTTTGTGTAGATTTATATGA

Coding sequence (CDS)

ATGGGAAGAAGAAGAGGAGAGATGGCATTCATTTTGGTAATTCTTTGTTCATCTATGATGGCTTCCTTTGCTTTCACACAACTCTTCACAATAGATTCTAAACAGCAAATAACTGTTAGAGAACACAATAATTCAAGATTTGTTGAACGTCGAGGGGGAGGTAGGGGAGTGATCCCAATATATGTGGCTGGCGCTTCATCAGGCCGTCATGGAAAGCATAGCCACAGCCTTGGAAATCGTCATAACAACTATATGGAGTTTATAATAATTGGTGTTTCCATCTCTATTGCACTTTTGTGTAGATTTATATGA
Homology
[Close]
BLAST of CSPI05G26270 vs. TrEMBL
Match: A0A0A0KTE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613615 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.1e-37
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 1 

Query: 19  MMASFAFTQLFTIDSKQQITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLG 78
           MMASFAFTQLFTIDSKQ ITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLG
Sbjct: 1   MMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLG 60

Query: 79  NRHNNYMEFIIIGVSISIALLCRFI 104
           NR NNY+EFIIIGVSISIALLCRFI
Sbjct: 61  NRPNNYIEFIIIGVSISIALLCRFI 85

[Close]
BLAST of CSPI05G26270 vs. NCBI nr
Match: gi|700197007|gb|KGN52184.1| (hypothetical protein Csa_5G613615 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.9e-37
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 1 

Query: 19  MMASFAFTQLFTIDSKQQITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLG 78
           MMASFAFTQLFTIDSKQ ITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLG
Sbjct: 1   MMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLG 60

Query: 79  NRHNNYMEFIIIGVSISIALLCRFI 104
           NR NNY+EFIIIGVSISIALLCRFI
Sbjct: 61  NRPNNYIEFIIIGVSISIALLCRFI 85

[Close]
BLAST of CSPI05G26270 vs. NCBI nr
Match: gi|659091828|ref|XP_008446753.1| (PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-06
Identity = 43/112 (38.39%), Postives = 58/112 (51.79%), Query Frame = 1 

Query: 3   RRRGEMAFILVILCSSMMASFAFTQLFTIDS---KQQITVREHNNSRFVERRGGGRGVIP 62
           RRR E+A IL+++ SSM+ SFAF QLF  DS   ++   + +H     +E R G    IP
Sbjct: 5   RRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNGIP 64

Query: 63  IY--------VAGASSGRHGKHSHSLGNRHNNYMEFIIIGVSISIALLCRFI 104
           I+          G   G  G  + + G    NYM+FI   VSIS+A LC  I
Sbjct: 65  IHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI 116

The following BLAST results are available for this feature:
BLAST of CSPI05G26270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G26270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTE6_CUCSA2.1e-3796.47Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613615 PE=4 SV=1[more]
BLAST of CSPI05G26270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G26270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197007|gb|KGN52184.1|2.9e-3796.47hypothetical protein Csa_5G613615 [Cucumis sativus][more]
gi|659091828|ref|XP_008446753.1|2.1e-0638.39PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G26270.1CSPI05G26270.1mRNA