CSPI05G21460 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G21460
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPhotosystem II CP47 reaction center protein
LocationChr5 : 22187986 .. 22190429 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGGCAACTATACACCAATTCATGCGCACAAAGGTATGAAACCCGGGCATTTCTTTATATATAATTAAATTTATTACGGTGTACAGAGTAGTCACATCTCGCATGATTTATTTATAGGAAGAAACATAATGGGCCTAATGTATTCTTAGGCATTAGCTATCCTAACTTTTGGATCTTTTGTTACAATATTTGAAGCTTCCAGTTATAAAACACACCTAGCTACGATAAAATGATTTAAAAACTTCATTGTCTATAATGTTTACTACTGTCCAACCATCATCTCTCCTTATTTGTAATCCACACTAAAACAATTTGTAGTTAAACACAGACTATTATAACTCATACTACCTTCTACGCTCCAAACACAAAAGAAAGACTACCATTATCCACAAACTATAACAACCAACTTTAATCCAAAACAACCCCTAAAATATTCTCCACTGCTGATGATAATTAGTATCATTATTGTTTGTTAAGGAAAAATAATCTCAAAAAACCAATTTTGAACATTAAAATTGTTTAGGCGTGGGAACTTGATTGATTTTTCTCCAATGGATGGGATTTATCTTTCGAGCTAAACTTGGAAAGACTACTGGGTTTACGAAATAAACTGACTAACTCGTCTAATTGGACAAACAAAATGGAGGGAGGAAATAATTAATAGTGGCAAATGTTTTAAAATTTATCATGTGAAAAAAAAAAAAAAGATAAAAGAGAGAAAAATAACCGGGGAAAGCCCATTCTGATGTGTAGCTTTACAGCCTGTCCTTTCGCTTTGTTTTTAACTTGTGAATAATTTGGATGTTTATCCCAAACAAGTAGAAAAATGACCCTGTTTTATTTATTTAGCTGAATAACTAGACTTTTATACTTGTGACATTTGGTATCAAAACTTAGAAAGTGTGTAAGACTCTATCAAACTAACAAGTCCTCGTGTAGTTAGTCTATGCATAAAAAGAGTGTCATTTACTTTTTTTATTCTTCAAATTTCAATTTTGAGTCAAAACATGCTTGACCTATATAATATTTTTTAAACTTCATGCTTCCCTGACAATAAATTTTTATAATCCTAAGTTATTATAGATGGATTATAATATTTTGTGTTTGGTGTTTAGTTATTTTATTTTGGATTATAATATTTTGTGTTGAGCCGCAAATTATTTTAATTTGAGAAAGTAATAGTAAATAGGGTAGAAAAAGAATAGTAAATATTGTAATAAATAAGAGTTTTGAAATAGTGTTGCCTAGAACTAGTTGAATTCTTTTAAATAGTATTTAGAATAAGAGGTGATATGTCTTAAAATAGTCCTTACTCCCTAAAATTTAGAGACTTCTGCCATTTTATATTTAACGTGCTAGTTAATTTTTAAAAATTTTGAGCATCTAAAGAGTTGTTAGATACAAAACCGGAAGTGTAGAGGGTGTTTGGCCTAGGTTTGGAATTCGCTAAACACGTGTTTGGACATTTGAAATAAAATTCTTGGGATTAAGAAACCAAACCATGTGTTTGAAATAGATTTTTTTTTAAATTATTGAATGTCATATGTTTTAAATTTTTTTTTACTTCAACATCTTATCAATGATGATTGATGATTGTTGACAACAAAAGTTGGCCAACTTCACAATTAACCATCGATGACAGATCATGATTGATCAACTGTCGTGACGACCGATCGTTTCTGTCGGCTTTGGATCATCTTGACCGTTGGTAACCTAGAACTTTGGATGTCATTGTCGTCGAGTGAACATCTTGATCGTTAGCGACTAATCGTTATCGTTAAAATTATTGATCGTCGTGCCTATTAATAAACGGTCGTAGTGATGATCAGTGACCAACCAATTGTCTTCACCATTGATTTATGGCTTTCTTCAACAAGACTTTTTCCACTATTTCACTTGAGTTTGAATAGCAAACACTATTCAAGCTCATGTATTTTTTTTTCTAACTCAATCTAGAAAATTCATTAGCTAACTCTAACGGCGAGCTTTCGGCTACCAACTTTGGCGACCGCCACAAACCTTGAAAAATTAATAAAAATGATTTTTTTCTGAGTCATTCCAAATACGCATTTGATTTAATCACAATAATAATTTTAAAAATAAACATTTTCTCATTCTTTTATTTTCTTTTCTTCTAGAGCTTTTTTTAAATAACAATTTTTATTTGGTCTTTTTTAATTCTCTTCTCGCTCAATTGGGTGAAATTTTTGAATTAGATCGTGCTACTTTGAAATCCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTCCTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCGAGAACCTTGTTCGGAGATGTCTTTGTTGGGATTGACCCAGATTTGGACACTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG

mRNA sequence

ATGTCAGGCAACTATACACCAATTCATGCGCACAAAGATCGTGCTACTTTGAAATCCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTCCTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCGAGAACCTTGTTCGGAGATGTCTTTGTTGGGATTGACCCAGATTTGGACACTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG

Coding sequence (CDS)

ATGTCAGGCAACTATACACCAATTCATGCGCACAAAGATCGTGCTACTTTGAAATCCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTCCTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCGAGAACCTTGTTCGGAGATGTCTTTGTTGGGATTGACCCAGATTTGGACACTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG
Homology
[Close]
BLAST of CSPI05G21460 vs. Swiss-Prot
Match: PSBB_CUCSA (Photosystem II CP47 reaction center protein OS=Cucumis sativus GN=psbB PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.5e-37
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 1 

Query: 13  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEF 72
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEF 492

Query: 73  GAFQKLGDPTTKRV 87
           GAFQKLGDPTTKRV
Sbjct: 493 GAFQKLGDPTTKRV 506

[Close]
BLAST of CSPI05G21460 vs. Swiss-Prot
Match: PSBB_OENAR (Photosystem II CP47 reaction center protein OS=Oenothera argillicola GN=psbB PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-36
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 13  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEF 72
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEF 492

Query: 73  GAFQKLGDPTTKR 86
           GAFQKLGDPTT+R
Sbjct: 493 GAFQKLGDPTTRR 505

[Close]
BLAST of CSPI05G21460 vs. Swiss-Prot
Match: PSBB_OENBI (Photosystem II CP47 reaction center protein OS=Oenothera biennis GN=psbB PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-36
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 13  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEF 72
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEF 492

Query: 73  GAFQKLGDPTTKR 86
           GAFQKLGDPTT+R
Sbjct: 493 GAFQKLGDPTTRR 505

[Close]
BLAST of CSPI05G21460 vs. Swiss-Prot
Match: PSBB_OENEH (Photosystem II CP47 reaction center protein OS=Oenothera elata subsp. hookeri GN=psbB PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-36
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 13  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEF 72
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEF 492

Query: 73  GAFQKLGDPTTKR 86
           GAFQKLGDPTT+R
Sbjct: 493 GAFQKLGDPTTRR 505

[Close]
BLAST of CSPI05G21460 vs. Swiss-Prot
Match: PSBB_OENPA (Photosystem II CP47 reaction center protein OS=Oenothera parviflora GN=psbB PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-36
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 13  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEF 72
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEF 492

Query: 73  GAFQKLGDPTTKR 86
           GAFQKLGDPTT+R
Sbjct: 493 GAFQKLGDPTTRR 505

[Close]
BLAST of CSPI05G21460 vs. TrEMBL
Match: A0A0A0KVA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589930 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 8.5e-45
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1   MSGNYTPIHAHKDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFV 60
           MSGNYTPIHAHKDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFV
Sbjct: 347 MSGNYTPIHAHKDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFV 406

Query: 61  GIDPDLDTQVEFGAFQKLGDPTTKRV 87
           GIDPDLDTQVEFGAFQKLGDPTTKRV
Sbjct: 407 GIDPDLDTQVEFGAFQKLGDPTTKRV 432

[Close]
BLAST of CSPI05G21460 vs. TrEMBL
Match: Q7YMD1_CUCSA (Photosystem II 47 kDa protein (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.7e-35
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 1 

Query: 13  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEF 72
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEF
Sbjct: 105 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEF 164

Query: 73  GAFQKLGDPTTKRV 87
           GAFQKLGDPTTKRV
Sbjct: 165 GAFQKLGDPTTKRV 178

[Close]
BLAST of CSPI05G21460 vs. TrEMBL
Match: W8E7S0_9ROSI (Photosystem II CP47 reaction center protein OS=Cucumis hystrix GN=psbB PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.7e-35
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 1 

Query: 13  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEF 72
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEF 492

Query: 73  GAFQKLGDPTTKRV 87
           GAFQKLGDPTTKRV
Sbjct: 493 GAFQKLGDPTTKRV 506

[Close]
BLAST of CSPI05G21460 vs. TrEMBL
Match: Q8HS37_GUNCH (Photosystem II CP47 reaction center protein (Fragment) OS=Gunnera chilensis GN=psbB PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 8.0e-35
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 13  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEF 72
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEF
Sbjct: 409 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEF 468

Query: 73  GAFQKLGDPTTKR 86
           GAFQKLGDPTTKR
Sbjct: 469 GAFQKLGDPTTKR 481

[Close]
BLAST of CSPI05G21460 vs. TrEMBL
Match: A9XVI1_9MAGN (Photosystem II CP47 reaction center protein (Fragment) OS=Gunnera manicata GN=psbB PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 8.0e-35
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 13  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEF 72
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEF
Sbjct: 432 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEF 491

Query: 73  GAFQKLGDPTTKR 86
           GAFQKLGDPTTKR
Sbjct: 492 GAFQKLGDPTTKR 504

[Close]
BLAST of CSPI05G21460 vs. TAIR10
Match: ATCG00680.1 (ATCG00680.1 photosystem II reaction center protein B)

HSP 1 Score: 152.1 bits (383), Expect = 1.5e-37
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 1 

Query: 13  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEF 72
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLD QVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEF 492

Query: 73  GAFQKLGDPTTKR 86
           GAFQKLGDPTTKR
Sbjct: 493 GAFQKLGDPTTKR 505

[Close]
BLAST of CSPI05G21460 vs. NCBI nr
Match: gi|700196499|gb|KGN51676.1| (hypothetical protein Csa_5G589930 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.2e-44
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1   MSGNYTPIHAHKDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFV 60
           MSGNYTPIHAHKDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFV
Sbjct: 347 MSGNYTPIHAHKDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFV 406

Query: 61  GIDPDLDTQVEFGAFQKLGDPTTKRV 87
           GIDPDLDTQVEFGAFQKLGDPTTKRV
Sbjct: 407 GIDPDLDTQVEFGAFQKLGDPTTKRV 432

[Close]
BLAST of CSPI05G21460 vs. NCBI nr
Match: gi|590000440|ref|YP_009004069.1| (photosystem II CP47 chlorophyll apoprotein [Cucumis hystrix])

HSP 1 Score: 155.6 bits (392), Expect = 3.9e-35
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 1 

Query: 13  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEF 72
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEF 492

Query: 73  GAFQKLGDPTTKRV 87
           GAFQKLGDPTTKRV
Sbjct: 493 GAFQKLGDPTTKRV 506

[Close]
BLAST of CSPI05G21460 vs. NCBI nr
Match: gi|31747037|gb|AAP57675.1| (photosystem II 47 kDa protein [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 3.9e-35
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 1 

Query: 13  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEF 72
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEF
Sbjct: 105 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEF 164

Query: 73  GAFQKLGDPTTKRV 87
           GAFQKLGDPTTKRV
Sbjct: 165 GAFQKLGDPTTKRV 178

[Close]
BLAST of CSPI05G21460 vs. NCBI nr
Match: gi|959122514|ref|YP_009183105.1| (photosystem II CP47 chlorophyll apoprotein (plastid) [Plantago media])

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-34
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 13  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEF 72
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEF
Sbjct: 433 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEF 492

Query: 73  GAFQKLGDPTTKR 86
           GAFQKLGDPTTKR
Sbjct: 493 GAFQKLGDPTTKR 505

[Close]
BLAST of CSPI05G21460 vs. NCBI nr
Match: gi|27446459|gb|AAG12363.1| (photosystem II CP47 protein [Gunnera chilensis])

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-34
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 13  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEF 72
           DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEF
Sbjct: 409 DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEF 468

Query: 73  GAFQKLGDPTTKR 86
           GAFQKLGDPTTKR
Sbjct: 469 GAFQKLGDPTTKR 481

The following BLAST results are available for this feature:
BLAST of CSPI05G21460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBB_CUCSA2.5e-3797.30Photosystem II CP47 reaction center protein OS=Cucumis sativus GN=psbB PE=3 SV=1[more]
PSBB_OENAR1.6e-3695.89Photosystem II CP47 reaction center protein OS=Oenothera argillicola GN=psbB PE=... [more]
PSBB_OENBI1.6e-3695.89Photosystem II CP47 reaction center protein OS=Oenothera biennis GN=psbB PE=3 SV... [more]
PSBB_OENEH1.6e-3695.89Photosystem II CP47 reaction center protein OS=Oenothera elata subsp. hookeri GN... [more]
PSBB_OENPA1.6e-3695.89Photosystem II CP47 reaction center protein OS=Oenothera parviflora GN=psbB PE=3... [more]
BLAST of CSPI05G21460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVA2_CUCSA8.5e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589930 PE=4 SV=1[more]
Q7YMD1_CUCSA2.7e-3597.30Photosystem II 47 kDa protein (Fragment) OS=Cucumis sativus PE=2 SV=1[more]
W8E7S0_9ROSI2.7e-3597.30Photosystem II CP47 reaction center protein OS=Cucumis hystrix GN=psbB PE=3 SV=1[more]
Q8HS37_GUNCH8.0e-3597.26Photosystem II CP47 reaction center protein (Fragment) OS=Gunnera chilensis GN=p... [more]
A9XVI1_9MAGN8.0e-3597.26Photosystem II CP47 reaction center protein (Fragment) OS=Gunnera manicata GN=ps... [more]
BLAST of CSPI05G21460 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00680.11.5e-3795.89ATCG00680.1 photosystem II reaction center protein B[more]
BLAST of CSPI05G21460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196499|gb|KGN51676.1|1.2e-44100.00hypothetical protein Csa_5G589930 [Cucumis sativus][more]
gi|590000440|ref|YP_009004069.1|3.9e-3597.30photosystem II CP47 chlorophyll apoprotein [Cucumis hystrix][more]
gi|31747037|gb|AAP57675.1|3.9e-3597.30photosystem II 47 kDa protein [Cucumis sativus][more]
gi|959122514|ref|YP_009183105.1|1.1e-3497.26photosystem II CP47 chlorophyll apoprotein (plastid) [Plantago media][more]
gi|27446459|gb|AAG12363.1|1.1e-3497.26photosystem II CP47 protein [Gunnera chilensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000932PS_antenna-like
IPR001280PSI_PsaA/B
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009767photosynthetic electron transport chain
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0009521photosystem
GO:0016020membrane
GO:0009522photosystem I
GO:0009579thylakoid
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016168chlorophyll binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0015979 photosynthesis
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009772 photosynthetic electron transport in photosystem II
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0016020 membrane
cellular_component GO:0009521 photosystem
cellular_component GO:0009579 thylakoid
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G21460.1CSPI05G21460.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 12..80
score: 1.6
IPR001280Photosystem I PsaA/PsaBunknownSSF81558Photosystem I subunits PsaA/PsaBcoord: 11..86
score: 1.46
NoneNo IPR availablePANTHERPTHR33180FAMILY NOT NAMEDcoord: 13..86
score: 3.0
NoneNo IPR availablePANTHERPTHR33180:SF8SUBFAMILY NOT NAMEDcoord: 13..86
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G21460Csa5G589930Cucumber (Chinese Long) v2cpicuB239
CSPI05G21460CsaV3_5G030320Cucumber (Chinese Long) v3cpicucB284
CSPI05G21460CsGy5G020980Cucumber (Gy14) v2cgybcpiB225
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G21460Cucurbita pepo (Zucchini)cpecpiB042
CSPI05G21460Cucurbita pepo (Zucchini)cpecpiB440
CSPI05G21460Cucurbita pepo (Zucchini)cpecpiB837
CSPI05G21460Bottle gourd (USVL1VR-Ls)cpilsiB372
CSPI05G21460Bottle gourd (USVL1VR-Ls)cpilsiB392
CSPI05G21460Melon (DHL92) v3.6.1cpimedB363
CSPI05G21460Melon (DHL92) v3.6.1cpimedB383
CSPI05G21460Cucumber (Gy14) v2cgybcpiB077
CSPI05G21460Cucumber (Gy14) v2cgybcpiB233
CSPI05G21460Silver-seed gourdcarcpiB0331
CSPI05G21460Silver-seed gourdcarcpiB0657
CSPI05G21460Silver-seed gourdcarcpiB0727
CSPI05G21460Cucumber (Chinese Long) v3cpicucB261
CSPI05G21460Watermelon (97103) v2cpiwmbB373
CSPI05G21460Watermelon (97103) v2cpiwmbB421
CSPI05G21460Wax gourdcpiwgoB491
CSPI05G21460Wax gourdcpiwgoB516
CSPI05G21460Wild cucumber (PI 183967)cpicpiB076
CSPI05G21460Cucumber (Gy14) v1cgycpiB076
CSPI05G21460Cucumber (Gy14) v1cgycpiB580
CSPI05G21460Cucurbita maxima (Rimu)cmacpiB190
CSPI05G21460Cucurbita maxima (Rimu)cmacpiB419
CSPI05G21460Cucurbita maxima (Rimu)cmacpiB758
CSPI05G21460Cucurbita moschata (Rifu)cmocpiB176
CSPI05G21460Cucurbita moschata (Rifu)cmocpiB407
CSPI05G21460Cucurbita moschata (Rifu)cmocpiB748
CSPI05G21460Cucumber (Chinese Long) v2cpicuB220
CSPI05G21460Melon (DHL92) v3.5.1cpimeB369
CSPI05G21460Melon (DHL92) v3.5.1cpimeB389
CSPI05G21460Watermelon (Charleston Gray)cpiwcgB369
CSPI05G21460Watermelon (Charleston Gray)cpiwcgB429
CSPI05G21460Watermelon (97103) v1cpiwmB382
CSPI05G21460Watermelon (97103) v1cpiwmB444